BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2922023.2.1
(1122 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB261366.1|CB261366 02-E9572-012-004-D01-T7R MPIZ-ADIS-0... 50 8e-004
gb|AF191027.1|AF191027 Arabidopsis thaliana papain-type cys... 50 8e-004
gb|BT005179.1| Arabidopsis thaliana clone U50467 unknown pr... 50 8e-004
emb|BX828945.1|CNS0A2LF Arabidopsis thaliana Full-length cD... 50 8e-004
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 50 8e-004
dbj|AK117394.1| Arabidopsis thaliana At4g35350 mRNA for put... 50 8e-004
emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome... 50 8e-004
emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosom... 50 8e-004
ref|NM_119701.2| Arabidopsis thaliana XCP1 (XYLEM CYSTEINE ... 50 8e-004
ref|NM_202958.1| Arabidopsis thaliana XCP1 (XYLEM CYSTEINE ... 50 8e-004
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 50 8e-004
gb|CK118456.1|CK118456 217a07.p1 AtM1 Arabidopsis thaliana ... 48 0.003
gb|AU238243.1|AU238243 AU238243 RAFL16 Arabidopsis thaliana... 46 0.013
gb|Z34224.1|Z34224 ATTS3258 Versailles-VB Arabidopsis thali... 44 0.052
gb|AU228161.1|AU228161 AU228161 RAFL16 Arabidopsis thaliana... 44 0.052
gb|BP599910.1|BP599910 BP599910 RAFL16 Arabidopsis thaliana... 44 0.052
gb|BP601326.1|BP601326 BP601326 RAFL16 Arabidopsis thaliana... 44 0.052
gb|BP606183.1|BP606183 BP606183 RAFL16 Arabidopsis thaliana... 44 0.052
gb|BP611526.1|BP611526 BP611526 RAFL16 Arabidopsis thaliana... 44 0.052
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.052
gb|BT004146.1| Arabidopsis thaliana clone RAFL16-01-H24 (R5... 44 0.052
gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BA... 44 0.052
ref|NM_102650.2| Arabidopsis thaliana cysteine-type endopep... 44 0.052
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.052
gb|CL507679.1|CL507679 SAIL_785_C09.v1 SAIL Collection Arab... 42 0.20
>gb|CB261366.1|CB261366 02-E9572-012-004-D01-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769D014Q 5-PRIME, mRNA sequence
Length = 577
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 577 atgtactggaatgcgtagtccatgagacctccattgcagcc 537
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 430 gcccaacagctaccacattgaccctggtccttgac 396
>gb|AF191027.1|AF191027 Arabidopsis thaliana papain-type cysteine endopeptidase XCP1 mRNA,
complete cds
Length = 1214
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 635 atgtactggaatgcgtagtccatgagacctccattgcagcc 595
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 488 gcccaacagctaccacattgaccctggtccttgac 454
>gb|BT005179.1| Arabidopsis thaliana clone U50467 unknown protein (At4g35350) mRNA,
complete cds
Length = 1099
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 635 atgtactggaatgcgtagtccatgagacctccattgcagcc 595
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 488 gcccaacagctaccacattgaccctggtccttgac 454
>emb|BX828945.1|CNS0A2LF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL53ZB08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1195
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 669 atgtactggaatgcgtagtccatgagacctccattgcagcc 629
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 522 gcccaacagctaccacattgaccctggtccttgac 488
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 12724049 atgtactggaatgcgtagtccatgagacctccattgcagcc 12724009
>dbj|AK117394.1| Arabidopsis thaliana At4g35350 mRNA for putative cysteine
proteinase, complete cds, clone: RAFL16-98-B02
Length = 1244
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 682 atgtactggaatgcgtagtccatgagacctccattgcagcc 642
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 535 gcccaacagctaccacattgaccctggtccttgac 501
>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project)
Length = 86710
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 27478 atgtactggaatgcgtagtccatgagacctccattgcagcc 27518
>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83
Length = 197859
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 75873 atgtactggaatgcgtagtccatgagacctccattgcagcc 75833
>ref|NM_119701.2| Arabidopsis thaliana XCP1 (XYLEM CYSTEINE PEPTIDASE 1);
cysteine-type endopeptidase/ cysteine-type peptidase
AT4G35350 (XCP1) transcript variant AT4G35350.1 mRNA,
complete cds
Length = 1244
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 682 atgtactggaatgcgtagtccatgagacctccattgcagcc 642
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 535 gcccaacagctaccacattgaccctggtccttgac 501
>ref|NM_202958.1| Arabidopsis thaliana XCP1 (XYLEM CYSTEINE PEPTIDASE 1);
cysteine-type endopeptidase/ cysteine-type peptidase
AT4G35350 (XCP1) transcript variant AT4G35350.2 mRNA,
complete cds
Length = 1340
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 682 atgtactggaatgcgtagtccatgagacctccattgcagcc 642
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 535 gcccaacagctaccacattgaccctggtccttgac 501
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 706 atgtactggaacgcgtagtccatgaggcccccgttgcagcc 746
||||||||||| |||||||||||||| || || ||||||||
Sbjct: 16811262 atgtactggaatgcgtagtccatgagacctccattgcagcc 16811222
>gb|CK118456.1|CK118456 217a07.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011A07217
5-PRIME, mRNA sequence
Length = 464
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 865 ccgcattggccctggtccttgacgtcggtgacagcgcccttctgcctccagtcgac 920
||||| |||||||||||||||| | |||||| |||||||| ||||||||||||
Sbjct: 166 ccgcactggccctggtccttgatgggggtgacggcgcccttggacctccagtcgac 111
>gb|AU238243.1|AU238243 AU238243 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-98-B02 5',
mRNA sequence
Length = 631
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtccttgac 887
||||| |||||||| ||||| ||||||||||||||
Sbjct: 535 gcccaacagctaccacattgaccctggtccttgac 501
>gb|Z34224.1|Z34224 ATTS3258 Versailles-VB Arabidopsis thaliana cDNA clone VBVEG09,
mRNA sequence
Length = 363
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 145 ccccacgagttcttagccagccagtacttg 174
>gb|AU228161.1|AU228161 AU228161 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-01-H24 3',
mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 224 ccccacgagttcttagccagccagtacttg 253
>gb|BP599910.1|BP599910 BP599910 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-43-N24 3',
mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 337 ccccacgagttcttagccagccagtacttg 366
>gb|BP601326.1|BP601326 BP601326 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-J08 3',
mRNA sequence
Length = 434
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 337 ccccacgagttcttagccagccagtacttg 366
>gb|BP606183.1|BP606183 BP606183 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-O20 3',
mRNA sequence
Length = 425
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 303 ccccacgagttcttagccagccagtacttg 332
>gb|BP611526.1|BP611526 BP611526 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-86-B17 3',
mRNA sequence
Length = 459
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 305 ccccacgagttcttagccagccagtacttg 334
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 10171987 ccccacgagttcttagccagccagtacttg 10172016
>gb|BT004146.1| Arabidopsis thaliana clone RAFL16-01-H24 (R50046) putative cysteine
proteinase (At1g29090) mRNA, complete cds
Length = 1271
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 1032 ccccacgagttcttagccagccagtacttg 1003
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete
sequence
Length = 154716
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 100184 ccccacgagttcttagccagccagtacttg 100155
>ref|NM_102650.2| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type
peptidase AT1G29090 mRNA, complete cds
Length = 1255
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 1032 ccccacgagttcttagccagccagtacttg 1003
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.052
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 385 ccccacgagttcttgaccagccagtacttg 414
|||||||||||||| ||||||||||||||
Sbjct: 10163192 ccccacgagttcttagccagccagtacttg 10163221
>gb|CL507679.1|CL507679 SAIL_785_C09.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_785_C09.v1, DNA sequence
Length = 933
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 676 tcctccgccgccaccccgccg 696
|||||||||||||||||||||
Sbjct: 567 tcctccgccgccaccccgccg 587
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 290,613
Number of Sequences: 1013581
Number of extensions: 290613
Number of successful extensions: 23255
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22843
Number of HSP's gapped (non-prelim): 412
length of query: 1122
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1102
effective length of database: 888,669,252
effective search space: 979313515704
effective search space used: 979313515704
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)