BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AX509627.1| Sequence 4322 from Patent WO0216655 46 0.012
emb|BX322978.1| Arabidopsis thaliana transposon insertion S... 46 0.012
emb|AL806117.1| Arabidopsis thaliana transposon insertion S... 46 0.012
gb|AC006532.5| Arabidopsis thaliana chromosome 2 clone F14H... 46 0.012
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.012
>emb|AX509627.1| Sequence 4322 from Patent WO0216655
Length = 2000
Score = 46.1 bits (23), Expect = 0.012
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 518 aagaaatattgtggtatttgccaaagaatgctcattggaacag 560
|||| |||||| || || ||||||| |||||||||||||||||
Sbjct: 1452 aagatatattgagggatatgccaaaaaatgctcattggaacag 1410
>emb|BX322978.1| Arabidopsis thaliana transposon insertion STS SM_3.36122, sequence
tagged site
Length = 428
Score = 46.1 bits (23), Expect = 0.012
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 518 aagaaatattgtggtatttgccaaagaatgctcattggaacag 560
|||| |||||| || || ||||||| |||||||||||||||||
Sbjct: 315 aagatatattgagggatatgccaaaaaatgctcattggaacag 273
>emb|AL806117.1| Arabidopsis thaliana transposon insertion STS SM_3.17228, sequence
tagged site
Length = 461
Score = 46.1 bits (23), Expect = 0.012
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 518 aagaaatattgtggtatttgccaaagaatgctcattggaacag 560
|||| |||||| || || ||||||| |||||||||||||||||
Sbjct: 315 aagatatattgagggatatgccaaaaaatgctcattggaacag 273
>gb|AC006532.5| Arabidopsis thaliana chromosome 2 clone F14H20 map CIC11A04, complete
sequence
Length = 76976
Score = 46.1 bits (23), Expect = 0.012
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 518 aagaaatattgtggtatttgccaaagaatgctcattggaacag 560
|||| |||||| || || ||||||| |||||||||||||||||
Sbjct: 50128 aagatatattgagggatatgccaaaaaatgctcattggaacag 50086
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.012
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 518 aagaaatattgtggtatttgccaaagaatgctcattggaacag 560
|||| |||||| || || ||||||| |||||||||||||||||
Sbjct: 478567 aagatatattgagggatatgccaaaaaatgctcattggaacag 478525
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 387,998
Number of Sequences: 1013581
Number of extensions: 387998
Number of successful extensions: 25664
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25514
Number of HSP's gapped (non-prelim): 150
length of query: 1036
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1016
effective length of database: 888,669,252
effective search space: 902887960032
effective search space used: 902887960032
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)