BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2751069.2.1
(940 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF233592.1|AF233592 Arabidopsis thaliana REVOLUTA mRNA, ... 64 5e-008
gb|AF188994.1| Arabidopsis thaliana homeodomain-leucine zip... 64 5e-008
emb|BX830562.1|CNS09YQ2 Arabidopsis thaliana Full-length cD... 64 5e-008
emb|CQ804028.1| Sequence 439 from Patent WO2004035798 64 5e-008
emb|CQ879860.1| Sequence 7 from Patent WO2004063379 64 5e-008
ref|NM_125462.2| Arabidopsis thaliana REV (REVOLUTA); DNA b... 64 5e-008
gb|BE522456.1|BE522456 M26A4STM Arabidopsis developing seed... 62 2e-007
gb|AY060556.1| Arabidopsis thaliana At1g52150/F5F19_21 mRNA... 62 2e-007
emb|AX505646.1| Sequence 341 from Patent WO0216655 62 2e-007
gb|AC006216.1|F5F19 Arabidopsis thaliana chromosome 1 BAC F... 62 2e-007
emb|BX813689.1|CNS0ADQZ Arabidopsis thaliana Full-length cD... 62 2e-007
gb|AY902309.1| Arabidopsis thaliana CORONA (CNA) gene, comp... 62 2e-007
emb|AJ439449.1|ATH439449 Arabidopsis thaliana mRNA for home... 62 2e-007
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 62 2e-007
ref|NM_104096.2| Arabidopsis thaliana ATHB-15 (INCURVATA 4)... 62 2e-007
ref|NM_179464.1| Arabidopsis thaliana ATHB-15 (INCURVATA 4)... 62 2e-007
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 62 2e-007
gb|BH213218.1|BH213218 SALK_008924 Arabidopsis thaliana TDN... 56 1e-005
gb|CF652868.1|CF652868 81-L020526w-066-003-B22-SP6P MPIZ-AD... 56 1e-005
gb|BX841112.1|BX841112 BX841112 Arabidopsis thaliana Flower... 56 1e-005
gb|DR751595.1|DR751595 53-L022148-065-007-E07-SeLB MPIZ-ADI... 56 1e-005
gb|AY099791.1| Arabidopsis thaliana homeodomain transcripti... 56 1e-005
gb|BT000335.1| Arabidopsis thaliana homeodomain transcripti... 56 1e-005
emb|AX507862.1| Sequence 2557 from Patent WO0216655 56 1e-005
gb|AC003096.3| Arabidopsis thaliana chromosome 2 clone T29F... 56 1e-005
emb|AJ441291.1|ATH441291 Arabidopsis thaliana mRNA for home... 56 1e-005
emb|Y11122.1|ATHB14 A.thaliana ATHB-14 gene 56 1e-005
ref|NM_129025.2| Arabidopsis thaliana PHB (PHABULOSA); DNA ... 56 1e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 56 1e-005
gb|AY170127.1| Arabidopsis thaliana homeodomain-leucine zip... 52 2e-004
dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosom... 52 2e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 52 2e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 52 2e-004
gb|BX837888.1|BX837888 BX837888 Arabidopsis thaliana Hormon... 44 0.043
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.043
gb|AY139985.2| Arabidopsis thaliana unknown protein (At1g15... 44 0.043
gb|BT006616.1| Arabidopsis thaliana At1g15170 mRNA, complet... 44 0.043
gb|AC007591.2|F9L1 Arabidopsis thaliana chromosome 1 BAC F9... 44 0.043
emb|BX815532.1|CNS0ABBP Arabidopsis thaliana Full-length cD... 44 0.043
emb|BX816976.1|CNS0ABUB Arabidopsis thaliana Full-length cD... 44 0.043
emb|BX817002.1|CNS0ABUY Arabidopsis thaliana Full-length cD... 44 0.043
emb|CQ804818.1| Sequence 1229 from Patent WO2004035798 44 0.043
ref|NM_101385.2| Arabidopsis thaliana antiporter/ drug tran... 44 0.043
emb|BX945973.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.17
gb|F20019.1|F20019 ATTS6058 AC16H Arabidopsis thaliana cDNA... 42 0.17
gb|BE527344.1|BE527344 M68A04STM Arabidopsis developing see... 42 0.17
emb|AX506311.1| Sequence 1006 from Patent WO0216655 42 0.17
gb|AF069716.1|AF069716 Arabidopsis Thaliana BAC F6A4, Chrom... 42 0.17
gb|AC009917.2|F26G16 Arabidopsis thaliana chromosome 1 BAC ... 42 0.17
emb|BX815318.1|CNS0AATA Arabidopsis thaliana Full-length cD... 42 0.17
emb|AJ440967.1|ATH440967 Arabidopsis thaliana mRNA for home... 42 0.17
emb|Y10922.1|ATHB9 A.thaliana ATHB-9 gene 42 0.17
ref|NM_102785.3| Arabidopsis thaliana PHV (PHAVOLUTA); DNA ... 42 0.17
>gb|AF233592.1|AF233592 Arabidopsis thaliana REVOLUTA mRNA, complete cds
Length = 2821
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 632 gcatcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgcctt 691
|||||||| || |||||||||| |||||| |||||||| | ||||| ||||| ||||||
Sbjct: 1395 gcatcattgaagcccctgcttaatctttggctaaaggttctaagaacagcaggctgcctt 1336
Query: 692 cccaaggcatacactacttc 711
|| || |||||||||||||
Sbjct: 1335 cctaatccatacactacttc 1316
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 1266 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 1207
Query: 821 ctccatgcctcgagat 836
||||| ||||| ||||
Sbjct: 1206 ctccaagcctcaagat 1191
>gb|AF188994.1| Arabidopsis thaliana homeodomain-leucine zipper protein
interfascicular fiberless 1 (IFL1) mRNA, complete cds
Length = 3169
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 632 gcatcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgcctt 691
|||||||| || |||||||||| |||||| |||||||| | ||||| ||||| ||||||
Sbjct: 1712 gcatcattgaagcccctgcttaatctttggctaaaggttctaagaacagcaggctgcctt 1653
Query: 692 cccaaggcatacactacttc 711
|| || |||||||||||||
Sbjct: 1652 cctaatccatacactacttc 1633
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 1583 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 1524
Query: 821 ctccatgcctcgagat 836
||||| ||||| ||||
Sbjct: 1523 ctccaagcctcaagat 1508
>emb|BX830562.1|CNS09YQ2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB90ZC01 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 3152
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 632 gcatcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgcctt 691
|||||||| || |||||||||| |||||| |||||||| | ||||| ||||| ||||||
Sbjct: 1823 gcatcattgaagcccctgcttaatctttggctaaaggttctaagaacagcaggctgcctt 1764
Query: 692 cccaaggcatacactacttc 711
|| || |||||||||||||
Sbjct: 1763 cctaatccatacactacttc 1744
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 1694 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 1635
Query: 821 ctccatgcctcgagat 836
||||| ||||| ||||
Sbjct: 1634 ctccaagcctcaagat 1619
>emb|CQ804028.1| Sequence 439 from Patent WO2004035798
Length = 2529
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 632 gcatcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgcctt 691
|||||||| || |||||||||| |||||| |||||||| | ||||| ||||| ||||||
Sbjct: 1208 gcatcattgaagcccctgcttaatctttggctaaaggttctaagaacagcaggctgcctt 1149
Query: 692 cccaaggcatacactacttc 711
|| || |||||||||||||
Sbjct: 1148 cctaatccatacactacttc 1129
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 1079 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 1020
Query: 821 ctccatgcctcgagat 836
||||| ||||| ||||
Sbjct: 1019 ctccaagcctcaagat 1004
>emb|CQ879860.1| Sequence 7 from Patent WO2004063379
Length = 3169
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 632 gcatcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgcctt 691
|||||||| || |||||||||| |||||| |||||||| | ||||| ||||| ||||||
Sbjct: 1712 gcatcattgaagcccctgcttaatctttggctaaaggttctaagaacagcaggctgcctt 1653
Query: 692 cccaaggcatacactacttc 711
|| || |||||||||||||
Sbjct: 1652 cctaatccatacactacttc 1633
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 1583 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 1524
Query: 821 ctccatgcctcgagat 836
||||| ||||| ||||
Sbjct: 1523 ctccaagcctcaagat 1508
>ref|NM_125462.2| Arabidopsis thaliana REV (REVOLUTA); DNA binding / lipid binding /
transcription factor AT5G60690 (REV) mRNA, complete cds
Length = 3860
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 632 gcatcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgcctt 691
|||||||| || |||||||||| |||||| |||||||| | ||||| ||||| ||||||
Sbjct: 1919 gcatcattgaagcccctgcttaatctttggctaaaggttctaagaacagcaggctgcctt 1860
Query: 692 cccaaggcatacactacttc 711
|| || |||||||||||||
Sbjct: 1859 cctaatccatacactacttc 1840
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 1790 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 1731
Query: 821 ctccatgcctcgagat 836
||||| ||||| ||||
Sbjct: 1730 ctccaagcctcaagat 1715
>gb|BE522456.1|BE522456 M26A4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M26A4 5', mRNA sequence
Length = 398
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 59 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 9
>gb|AY060556.1| Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds
Length = 3415
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 2184 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 2134
>emb|AX505646.1| Sequence 341 from Patent WO0216655
Length = 2511
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 1467 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 1417
>gb|AC006216.1|F5F19 Arabidopsis thaliana chromosome 1 BAC F5F19 sequence, complete sequence
Length = 110893
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 102958 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 103008
>emb|BX813689.1|CNS0ADQZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB33ZB08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1249
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 61 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 11
>gb|AY902309.1| Arabidopsis thaliana CORONA (CNA) gene, complete cds
Length = 4250
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 2574 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 2524
>emb|AJ439449.1|ATH439449 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein
(ATHB-15 gene)
Length = 2511
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 1467 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 1417
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 3770734 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 3770784
>ref|NM_104096.2| Arabidopsis thaliana ATHB-15 (INCURVATA 4); DNA binding /
transcription factor AT1G52150 (ATHB-15) transcript
variant AT1G52150.1 mRNA, complete cds
Length = 3430
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 2184 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 2134
>ref|NM_179464.1| Arabidopsis thaliana ATHB-15 (INCURVATA 4); DNA binding /
transcription factor AT1G52150 (ATHB-15) transcript
variant AT1G52150.2 mRNA, complete cds
Length = 3433
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 2184 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 2134
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 385 atacgcatcaatattgtaatcagcccattcagatctatgctccctcagaaa 435
|||||||||||| |||| ||||||||||| || |||||||||||||||||
Sbjct: 19415139 atacgcatcaatgttgttgtcagcccattctgacctatgctccctcagaaa 19415189
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 5220877 gaccaaccatcatcattgaaac 5220856
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 707 acttctccacttgtttcttgagcaatttg 735
||||||||||| || ||||||||||||||
Sbjct: 10798350 acttctccactagtctcttgagcaatttg 10798378
>gb|BH213218.1|BH213218 SALK_008924 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_008924, DNA sequence
Length = 458
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 302 acttctccacttgtttcttgtgcaatttgtct 271
>gb|CF652868.1|CF652868 81-L020526w-066-003-B22-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001B223Q 5-PRIME, mRNA sequence
Length = 960
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 348 acttctccacttgtttcttgtgcaatttgtct 317
Score = 54.0 bits (27), Expect = 4e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 401 taatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacg 460
||||||||||||||||||| || || || || ||||| ||||| || || ||||| |||
Sbjct: 660 taatcagcccattcagatcggtgttctctaaggaatcgaaccagcacagcgggtggaacg 601
Query: 461 ctctgcagtaacatggatgccttcgcacaaa 491
|||| || ||||| |||||||| |||||||
Sbjct: 600 ttctgaagcaacatagatgccttggcacaaa 570
>gb|BX841112.1|BX841112 BX841112 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB76ZE12 5PRIM, mRNA sequence
Length = 1075
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 941 acttctccacttgtttcttgtgcaatttgtct 910
>gb|DR751595.1|DR751595 53-L022148-065-007-E07-SeLB MPIZ-ADIS-065f Arabidopsis thaliana
cDNA clone 007-E07, mRNA sequence
Length = 912
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 109 acttctccacttgtttcttgtgcaatttgtct 140
>gb|AY099791.1| Arabidopsis thaliana homeodomain transcription factor (At2g34710)
mRNA, complete cds
Length = 3062
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 1450 acttctccacttgtttcttgtgcaatttgtct 1419
Score = 54.0 bits (27), Expect = 4e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 401 taatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacg 460
||||||||||||||||||| || || || || ||||| ||||| || || ||||| |||
Sbjct: 1762 taatcagcccattcagatcggtgttctctaaggaatcgaaccagcacagcgggtggaacg 1703
Query: 461 ctctgcagtaacatggatgccttcgcacaaa 491
|||| || ||||| |||||||| |||||||
Sbjct: 1702 ttctgaagcaacatagatgccttggcacaaa 1672
>gb|BT000335.1| Arabidopsis thaliana homeodomain transcription factor (At2g34710)
mRNA, complete cds
Length = 2663
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 1172 acttctccacttgtttcttgtgcaatttgtct 1141
Score = 54.0 bits (27), Expect = 4e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 401 taatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacg 460
||||||||||||||||||| || || || || ||||| ||||| || || ||||| |||
Sbjct: 1484 taatcagcccattcagatcggtgttctctaaggaatcgaaccagcacagcgggtggaacg 1425
Query: 461 ctctgcagtaacatggatgccttcgcacaaa 491
|||| || ||||| |||||||| |||||||
Sbjct: 1424 ttctgaagcaacatagatgccttggcacaaa 1394
>emb|AX507862.1| Sequence 2557 from Patent WO0216655
Length = 2559
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 1172 acttctccacttgtttcttgtgcaatttgtct 1141
Score = 54.0 bits (27), Expect = 4e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 401 taatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacg 460
||||||||||||||||||| || || || || ||||| ||||| || || ||||| |||
Sbjct: 1484 taatcagcccattcagatcggtgttctctaaggaatcgaaccagcacagcgggtggaacg 1425
Query: 461 ctctgcagtaacatggatgccttcgcacaaa 491
|||| || ||||| |||||||| |||||||
Sbjct: 1424 ttctgaagcaacatagatgccttggcacaaa 1394
>gb|AC003096.3| Arabidopsis thaliana chromosome 2 clone T29F13 map ve016, complete
sequence
Length = 69817
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 30890 acttctccacttgtttcttgtgcaatttgtct 30859
>emb|AJ441291.1|ATH441291 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14
(ATHB-14 gene)
Length = 2559
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 1172 acttctccacttgtttcttgtgcaatttgtct 1141
Score = 54.0 bits (27), Expect = 4e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 401 taatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacg 460
||||||||||||||||||| || || || || ||||| ||||| || || ||||| |||
Sbjct: 1484 taatcagcccattcagatcggtgttctctaaggaatcgaaccagcacagcgggtggaacg 1425
Query: 461 ctctgcagtaacatggatgccttcgcacaaa 491
|||| || ||||| |||||||| |||||||
Sbjct: 1424 ttctgaagcaacatagatgccttggcacaaa 1394
>emb|Y11122.1|ATHB14 A.thaliana ATHB-14 gene
Length = 5316
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 2959 acttctccacttgtttcttgtgcaatttgtct 2928
>ref|NM_129025.2| Arabidopsis thaliana PHB (PHABULOSA); DNA binding / transcription
factor AT2G34710 (PHB) mRNA, complete cds
Length = 3060
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 1448 acttctccacttgtttcttgtgcaatttgtct 1417
Score = 54.0 bits (27), Expect = 4e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 401 taatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccggtgggacg 460
||||||||||||||||||| || || || || ||||| ||||| || || ||||| |||
Sbjct: 1760 taatcagcccattcagatcggtgttctctaaggaatcgaaccagcacagcgggtggaacg 1701
Query: 461 ctctgcagtaacatggatgccttcgcacaaa 491
|||| || ||||| |||||||| |||||||
Sbjct: 1700 ttctgaagcaacatagatgccttggcacaaa 1670
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 707 acttctccacttgtttcttgagcaatttgtct 738
|||||||||||||||||||| |||||||||||
Sbjct: 14648720 acttctccacttgtttcttgtgcaatttgtct 14648751
>gb|AY170127.1| Arabidopsis thaliana homeodomain-leucine zipper protein (IFL1) gene,
complete cds
Length = 6711
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||||| |||||| |||||||| | ||||| ||||| |||||||| || |||||||
Sbjct: 4485 cctgcttaatctttggctaaaggttctaagaacagcaggctgccttcctaatccatacac 4426
Query: 706 tacttc 711
||||||
Sbjct: 4425 tacttc 4420
Score = 52.0 bits (26), Expect = 2e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 4289 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 4230
Query: 821 ctccatgcct 830
||||| ||||
Sbjct: 4229 ctccaagcct 4220
>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24
Length = 77999
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||||| |||||| |||||||| | ||||| ||||| |||||||| || |||||||
Sbjct: 43136 cctgcttaatctttggctaaaggttctaagaacagcaggctgccttcctaatccatacac 43077
Query: 706 tacttc 711
||||||
Sbjct: 43076 tacttc 43071
Score = 52.0 bits (26), Expect = 2e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 42940 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 42881
Query: 821 ctccatgcct 830
||||| ||||
Sbjct: 42880 ctccaagcct 42871
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||||| |||||| |||||||| | ||||| ||||| |||||||| || |||||||
Sbjct: 21675247 cctgcttaatctttggctaaaggttctaagaacagcaggctgccttcctaatccatacac 21675188
Query: 706 tacttc 711
||||||
Sbjct: 21675187 tacttc 21675182
Score = 52.0 bits (26), Expect = 2e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 21675051 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 21674992
Query: 821 ctccatgcct 830
||||| ||||
Sbjct: 21674991 ctccaagcct 21674982
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 gaaaaagaaaaggtaatgttg 42
|||||||||||||||||||||
Sbjct: 8056764 gaaaaagaaaaggtaatgttg 8056744
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||||| |||||| |||||||| | ||||| ||||| |||||||| || |||||||
Sbjct: 24417160 cctgcttaatctttggctaaaggttctaagaacagcaggctgccttcctaatccatacac 24417101
Query: 706 tacttc 711
||||||
Sbjct: 24417100 tacttc 24417095
Score = 52.0 bits (26), Expect = 2e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 761 gtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcaggaaca 820
|||||||| || ||||| ||| | || |||||||| || ||||||||||| || ||||||
Sbjct: 24416964 gtcattttttgtgcaacgactttggatgactcataaaggggtcgaagcacatccggaaca 24416905
Query: 821 ctccatgcct 830
||||| ||||
Sbjct: 24416904 ctccaagcct 24416895
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 gaaaaagaaaaggtaatgttg 42
|||||||||||||||||||||
Sbjct: 8562016 gaaaaagaaaaggtaatgttg 8562036
>gb|BX837888.1|BX837888 BX837888 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH10ZE12 5PRIM,
mRNA sequence
Length = 804
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 238 gaccaaccatcatcattgaaac 217
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 5220701 gaccaaccatcatcattgaaac 5220680
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 707 acttctccacttgtttcttgagcaatttg 735
||||||||||| || ||||||||||||||
Sbjct: 10807148 acttctccactagtctcttgagcaatttg 10807176
>gb|AY139985.2| Arabidopsis thaliana unknown protein (At1g15170) mRNA, complete cds
Length = 1652
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 242 gaccaaccatcatcattgaaac 221
>gb|BT006616.1| Arabidopsis thaliana At1g15170 mRNA, complete cds
Length = 1446
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 193 gaccaaccatcatcattgaaac 172
>gb|AC007591.2|F9L1 Arabidopsis thaliana chromosome 1 BAC F9L1 sequence, complete sequence
Length = 141984
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 36412 gaccaaccatcatcattgaaac 36391
>emb|BX815532.1|CNS0ABBP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS6ZG04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1662
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 205 gaccaaccatcatcattgaaac 184
>emb|BX816976.1|CNS0ABUB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH79ZD12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1626
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 236 gaccaaccatcatcattgaaac 215
>emb|BX817002.1|CNS0ABUY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH80ZB02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1615
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 238 gaccaaccatcatcattgaaac 217
>emb|CQ804818.1| Sequence 1229 from Patent WO2004035798
Length = 1446
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 193 gaccaaccatcatcattgaaac 172
>ref|NM_101385.2| Arabidopsis thaliana antiporter/ drug transporter/ transporter
AT1G15170 mRNA, complete cds
Length = 1712
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 602 gaccaaccatcatcattgaaac 623
||||||||||||||||||||||
Sbjct: 242 gaccaaccatcatcattgaaac 221
>emb|BX945973.1| Arabidopsis thaliana T-DNA flanking sequence GK-747C04-024592,
genomic survey sequence
Length = 364
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 gaaaaagaaaaggtaatgttg 42
|||||||||||||||||||||
Sbjct: 158 gaaaaagaaaaggtaatgttg 138
>gb|F20019.1|F20019 ATTS6058 AC16H Arabidopsis thaliana cDNA clone TAP0295 5', mRNA
sequence
Length = 343
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttg 735
||||||||||| || ||||||||||||||
Sbjct: 134 acttctccactagtctcttgagcaatttg 106
>gb|BE527344.1|BE527344 M68A04STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600036209R1 5', mRNA sequence
Length = 278
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttg 735
||||||||||| || ||||||||||||||
Sbjct: 206 acttctccactagtctcttgagcaatttg 178
>emb|AX506311.1| Sequence 1006 from Patent WO0216655
Length = 2526
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttg 735
||||||||||| || ||||||||||||||
Sbjct: 1160 acttctccactagtctcttgagcaatttg 1132
>gb|AF069716.1|AF069716 Arabidopsis Thaliana BAC F6A4, Chromosome IV, near 60.5 cM, complete
sequence
Length = 99123
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 gaaaaagaaaaggtaatgttg 42
|||||||||||||||||||||
Sbjct: 51752 gaaaaagaaaaggtaatgttg 51732
>gb|AC009917.2|F26G16 Arabidopsis thaliana chromosome 1 BAC F26G16 sequence, complete
sequence
Length = 75799
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 707 acttctccacttgtttcttgagcaatttg 735
||||||||||| || ||||||||||||||
Sbjct: 49218 acttctccactagtctcttgagcaatttg 49246
>emb|BX815318.1|CNS0AATA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS51ZC10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2956
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 707 acttctccacttgtttcttgagcaatttg 735
||||||||||| || ||||||||||||||
Sbjct: 1372 acttctccactagtctcttgagcaatttg 1344
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 472,553
Number of Sequences: 1013581
Number of extensions: 472553
Number of successful extensions: 33727
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31754
Number of HSP's gapped (non-prelim): 1966
length of query: 940
length of database: 908,940,872
effective HSP length: 20
effective length of query: 920
effective length of database: 888,669,252
effective search space: 817575711840
effective search space used: 817575711840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)