BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750951.2.1
(1014 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW004525.1|AW004525 701932008 A. thaliana, mixed source ... 70 8e-010
gb|AV782492.1|AV782492 AV782492 RAFL4 Arabidopsis thaliana ... 70 8e-010
gb|AV782912.1|AV782912 AV782912 RAFL5 Arabidopsis thaliana ... 70 8e-010
gb|AV788286.1|AV788286 AV788286 RAFL6 Arabidopsis thaliana ... 70 8e-010
gb|AV788571.1|AV788571 AV788571 RAFL6 Arabidopsis thaliana ... 70 8e-010
gb|AV804785.1|AV804785 AV804785 RAFL9 Arabidopsis thaliana ... 70 8e-010
gb|AV810544.1|AV810544 AV810544 RAFL9 Arabidopsis thaliana ... 70 8e-010
gb|BU636786.1|BU636786 011F03 Infected Arabidopsis Leaf Ara... 70 8e-010
gb|BP585706.1|BP585706 BP585706 RAFL15 Arabidopsis thaliana... 70 8e-010
gb|BP586149.1|BP586149 BP586149 RAFL15 Arabidopsis thaliana... 70 8e-010
gb|BP591437.1|BP591437 BP591437 RAFL15 Arabidopsis thaliana... 70 8e-010
gb|BP591994.1|BP591994 BP591994 RAFL15 Arabidopsis thaliana... 70 8e-010
gb|BP593791.1|BP593791 BP593791 RAFL15 Arabidopsis thaliana... 70 8e-010
gb|BP598306.1|BP598306 BP598306 RAFL16 Arabidopsis thaliana... 70 8e-010
gb|BP613712.1|BP613712 BP613712 RAFL16 Arabidopsis thaliana... 70 8e-010
gb|BP615080.1|BP615080 BP615080 RAFL16 Arabidopsis thaliana... 70 8e-010
gb|BP617996.1|BP617996 BP617996 RAFL16 Arabidopsis thaliana... 70 8e-010
gb|BP789177.1|BP789177 BP789177 RAFL7 Arabidopsis thaliana ... 70 8e-010
gb|DN604705.1|DN604705 JCAt5g15840 Arabidopsis Gateway cDNA... 70 8e-010
gb|DR749728.1|DR749728 96-L020914-065-003-H12-SeLB MPIZ-ADI... 70 8e-010
gb|DR749827.1|DR749827 92-L020593-065-004-D12-SeLB MPIZ-ADI... 70 8e-010
gb|DR750472.1|DR750472 53-L021268-065-003-H12S-SeLB MPIZ-AD... 70 8e-010
emb|A50828.1| Sequence 1 from Patent WO9614414 70 8e-010
emb|A50831.1| Sequence 4 from Patent WO9614414 70 8e-010
gb|AY052697.1| Arabidopsis thaliana AT5g24930/F6A4_140 mRNA... 70 8e-010
emb|Y10556.1|ATDNACON Arabidopsis thaliana col1 gene for co... 70 8e-010
gb|AY070097.1| Arabidopsis thaliana At5g15840 mRNA sequence 70 8e-010
gb|BT001926.1| Arabidopsis thaliana clone C105432 putative ... 70 8e-010
gb|AY086574.1| Arabidopsis thaliana clone 2588 mRNA, comple... 70 8e-010
gb|AF069716.1|AF069716 Arabidopsis Thaliana BAC F6A4, Chrom... 70 8e-010
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 70 8e-010
emb|AL391144.1|ATF14F8 Arabidopsis thaliana DNA chromosome ... 70 8e-010
emb|X94937.1|ATCONSTAN A.thaliana mRNA for CONSTANS protein 70 8e-010
ref|NM_121589.1| Arabidopsis thaliana CO (CONSTANS); transc... 70 8e-010
ref|NM_122402.2| Arabidopsis thaliana transcription factor/... 70 8e-010
ref|NM_001036810.1| Arabidopsis thaliana CO (CONSTANS); zin... 70 8e-010
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 70 8e-010
gb|AV786382.1|AV786382 AV786382 RAFL6 Arabidopsis thaliana ... 66 1e-008
gb|AV518300.1|AV518300 AV518300 Arabidopsis thaliana aboveg... 66 1e-008
gb|BP786561.1|BP786561 BP786561 RAFL7 Arabidopsis thaliana ... 66 1e-008
emb|BX830243.1|CNS0A1QL Arabidopsis thaliana Full-length cD... 66 1e-008
gb|AV803156.1|AV803156 AV803156 RAFL9 Arabidopsis thaliana ... 62 2e-007
gb|BP597094.1|BP597094 BP597094 RAFL15 Arabidopsis thaliana... 62 2e-007
gb|BP639057.1|BP639057 BP639057 RAFL19 Arabidopsis thaliana... 62 2e-007
gb|BP662300.1|BP662300 BP662300 RAFL21 Arabidopsis thaliana... 62 2e-007
gb|AV783249.1|AV783249 AV783249 RAFL5 Arabidopsis thaliana ... 58 3e-006
gb|AV786560.1|AV786560 AV786560 RAFL6 Arabidopsis thaliana ... 58 3e-006
gb|AV800647.1|AV800647 AV800647 RAFL9 Arabidopsis thaliana ... 58 3e-006
gb|CB185952.1|CB185952 EST01143 Arabidopsis virulent Pseudo... 58 3e-006
gb|AV439712.1|AV439712 AV439712 Arabidopsis thaliana above-... 58 3e-006
gb|CF773279.1|CF773279 AG_FSL_15A12 Arabidopsis ag-1 35S:AG... 58 3e-006
gb|CF773406.1|CF773406 AG_FSL_16F01 Arabidopsis ag-1 35S:AG... 58 3e-006
gb|BP668817.1|BP668817 BP668817 RAFL21 Arabidopsis thaliana... 58 3e-006
gb|BP785437.1|BP785437 BP785437 RAFL7 Arabidopsis thaliana ... 58 3e-006
gb|BP795243.1|BP795243 BP795243 RAFL7 Arabidopsis thaliana ... 58 3e-006
gb|DN604706.1|DN604706 JCAt3g02380 Arabidopsis Gateway cDNA... 58 3e-006
gb|DR750078.1|DR750078 76-L020593-065-004-D10-SeLB MPIZ-ADI... 58 3e-006
gb|L81119.1|ATHCOL2 Arabidopsis thaliana Landsberg erecta C... 58 3e-006
gb|L81120.1|ATHCOL2A Arabidopsis thaliana Landsberg erecta ... 58 3e-006
gb|AF370149.1| Arabidopsis thaliana putative flowering-time... 58 3e-006
gb|AY059092.1| Arabidopsis thaliana putative flowering-time... 58 3e-006
gb|AY088779.1| Arabidopsis thaliana clone 949 mRNA, complet... 58 3e-006
gb|AC068900.3|AC068900 Arabidopsis thaliana chromosome 3 BA... 58 3e-006
gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome II... 58 3e-006
emb|BX823618.1|CNS0A6JQ Arabidopsis thaliana Full-length cD... 58 3e-006
emb|BX822428.1|CNS0A74Y Arabidopsis thaliana Full-length cD... 58 3e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 58 3e-006
ref|NM_111105.1| Arabidopsis thaliana COL2 (CONSTANS-LIKE 2... 58 3e-006
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 58 3e-006
gb|AV800427.1|AV800427 AV800427 RAFL9 Arabidopsis thaliana ... 56 1e-005
gb|BP608848.1|BP608848 BP608848 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP620690.1|BP620690 BP620690 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP785822.1|BP785822 BP785822 RAFL7 Arabidopsis thaliana ... 56 1e-005
gb|BP785780.1|BP785780 BP785780 RAFL7 Arabidopsis thaliana ... 54 5e-005
gb|BP781971.1|BP781971 BP781971 RAFL7 Arabidopsis thaliana ... 52 2e-004
gb|BP794229.1|BP794229 BP794229 RAFL7 Arabidopsis thaliana ... 52 2e-004
emb|AL951533.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 8e-004
emb|AL951534.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 8e-004
emb|BX288698.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 8e-004
gb|AI994179.1|AI994179 701500035 A. thaliana, Ohio State cl... 50 8e-004
gb|AV807330.1|AV807330 AV807330 RAFL9 Arabidopsis thaliana ... 50 8e-004
gb|AV818573.1|AV818573 AV818573 RAFL9 Arabidopsis thaliana ... 50 8e-004
gb|BU636028.1|BU636028 044E12 Infected Arabidopsis Leaf Ara... 50 8e-004
gb|BP605414.1|BP605414 BP605414 RAFL16 Arabidopsis thaliana... 50 8e-004
gb|DN604709.1|DN604709 JCAt5g57660 Arabidopsis Gateway cDNA... 50 8e-004
gb|DR750621.1|DR750621 48-L020593-065-004-H06-SeLB MPIZ-ADI... 50 8e-004
gb|AY057632.1| Arabidopsis thaliana AT5g57660/MRI1_1 mRNA, ... 50 8e-004
gb|AY080747.1| Arabidopsis thaliana putative CONSTANS B-box... 50 8e-004
gb|AY114006.1| Arabidopsis thaliana putative CONSTANS B-box... 50 8e-004
gb|AY088432.1| Arabidopsis thaliana clone 6639 mRNA, comple... 50 8e-004
emb|BX832165.1|CNS09YN5 Arabidopsis thaliana Full-length cD... 50 8e-004
emb|BX831501.1|CNS09ZSB Arabidopsis thaliana Full-length cD... 50 8e-004
dbj|AB018118.1| Arabidopsis thaliana genomic DNA, chromosom... 50 8e-004
emb|CQ804432.1| Sequence 843 from Patent WO2004035798 50 8e-004
ref|NM_125149.2| Arabidopsis thaliana transcription factor/... 50 8e-004
gb|AI998030.1|AI998030 701672661 A. thaliana, Columbia Col-... 48 0.003
gb|AV784432.1|AV784432 AV784432 RAFL5 Arabidopsis thaliana ... 48 0.003
gb|AV796601.1|AV796601 AV796601 RAFL9 Arabidopsis thaliana ... 48 0.003
gb|AV807077.1|AV807077 AV807077 RAFL9 Arabidopsis thaliana ... 48 0.003
gb|AV818999.1|AV818999 AV818999 RAFL11 Arabidopsis thaliana... 48 0.003
gb|AV819420.1|AV819420 AV819420 RAFL11 Arabidopsis thaliana... 48 0.003
gb|AV820596.1|AV820596 AV820596 RAFL11 Arabidopsis thaliana... 48 0.003
gb|BP588663.1|BP588663 BP588663 RAFL15 Arabidopsis thaliana... 48 0.003
gb|BP603510.1|BP603510 BP603510 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP613270.1|BP613270 BP613270 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP633235.1|BP633235 BP633235 RAFL17 Arabidopsis thaliana... 48 0.003
gb|BP783318.1|BP783318 BP783318 RAFL7 Arabidopsis thaliana ... 48 0.003
gb|BP786615.1|BP786615 BP786615 RAFL7 Arabidopsis thaliana ... 48 0.003
gb|BP795077.1|BP795077 BP795077 RAFL7 Arabidopsis thaliana ... 48 0.003
gb|DR750202.1|DR750202 68-L020593-065-004-D09-SeLB MPIZ-ADI... 48 0.003
emb|Y10555.1|ATRNACON A.thaliana mRNA for CONSTANS like 1 (... 48 0.003
emb|AX412890.1| Sequence 654 from Patent WO0222675 48 0.003
emb|AX412891.1| Sequence 655 from Patent WO0222675 48 0.003
gb|AY074369.1| Arabidopsis thaliana putative CONSTANS 1 pro... 48 0.003
emb|AX507266.1| Sequence 1961 from Patent WO0216655 48 0.003
gb|BT002363.1| Arabidopsis thaliana clone U10630 putative C... 48 0.003
emb|BX834026.1|CNS0A0CO Arabidopsis thaliana Full-length cD... 48 0.003
emb|CQ805298.1| Sequence 1709 from Patent WO2004035798 48 0.003
ref|NM_121590.2| Arabidopsis thaliana COL1 (CONSTANS-LIKE 1... 48 0.003
emb|AL951678.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.012
gb|Z37717.1|Z37717 ATTS4182 Gif-SiliqueB Arabidopsis thalia... 46 0.012
gb|AA042520.1|AA042520 25113 Lambda-PRL2 Arabidopsis thalia... 46 0.012
emb|BX832666.1|CNS09ZN2 Arabidopsis thaliana Full-length cD... 46 0.012
emb|BX831971.1|CNS09ZOO Arabidopsis thaliana Full-length cD... 46 0.012
gb|AV806623.1|AV806623 AV806623 RAFL9 Arabidopsis thaliana ... 44 0.047
gb|BU635475.1|BU635475 023F09 Infected Arabidopsis Leaf Ara... 44 0.047
gb|BP794395.1|BP794395 BP794395 RAFL7 Arabidopsis thaliana ... 44 0.047
emb|AL049770.1|T27E11 Arabidopsis thaliana clone T27E11, **... 44 0.047
gb|AY057518.1| Arabidopsis thaliana AT4g27830/T27E11_70 mRN... 44 0.047
emb|AX506310.1| Sequence 1005 from Patent WO0216655 44 0.047
emb|AX506877.1| Sequence 1572 from Patent WO0216655 44 0.047
gb|BT002654.1| Arabidopsis thaliana At4g27830/T27E11_70 gen... 44 0.047
emb|AX651850.1| Sequence 715 from Patent WO03000898 44 0.047
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.047
emb|CQ806212.1| Sequence 2623 from Patent WO2004035798 44 0.047
emb|AL078579.1|ATT27E11 Arabidopsis thaliana DNA chromosome... 44 0.047
emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosom... 44 0.047
ref|NM_118920.3| Arabidopsis thaliana hydrolase, hydrolyzin... 44 0.047
ref|NM_118921.2| Arabidopsis thaliana hydrolase, hydrolyzin... 44 0.047
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.047
gb|BP594196.1|BP594196 BP594196 RAFL15 Arabidopsis thaliana... 42 0.18
>gb|AW004525.1|AW004525 701932008 A. thaliana, mixed source Arabidopsis thaliana cDNA clone
701932008, mRNA sequence
Length = 526
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 314 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 373
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 374 aagacaataaggtatgcttcgaggaag 400
>gb|AV782492.1|AV782492 AV782492 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-N23 3',
mRNA sequence
Length = 624
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 391 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 337
>gb|AV782912.1|AV782912 AV782912 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-03-D19 3',
mRNA sequence
Length = 670
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 427 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 373
>gb|AV788286.1|AV788286 AV788286 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-78-N17 3',
mRNA sequence
Length = 419
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 408 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 354
>gb|AV788571.1|AV788571 AV788571 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-80-C22 3',
mRNA sequence
Length = 418
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 373 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 314
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 313 aagacaataaggtatgcttcgaggaag 287
>gb|AV804785.1|AV804785 AV804785 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-40-I04 3',
mRNA sequence
Length = 423
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 409 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 355
>gb|AV810544.1|AV810544 AV810544 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-64-G02 3',
mRNA sequence
Length = 424
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 391 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 337
>gb|BU636786.1|BU636786 011F03 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 648
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 560 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 614
>gb|BP585706.1|BP585706 BP585706 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-03-J04 3',
mRNA sequence
Length = 440
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 418 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 364
>gb|BP586149.1|BP586149 BP586149 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-05-D05 3',
mRNA sequence
Length = 465
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 407 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 353
>gb|BP591437.1|BP591437 BP591437 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-14-K23 3',
mRNA sequence
Length = 431
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 406 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 352
>gb|BP591994.1|BP591994 BP591994 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-16-L04 3',
mRNA sequence
Length = 422
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 408 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 354
>gb|BP593791.1|BP593791 BP593791 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-23-H13 3',
mRNA sequence
Length = 454
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 388 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 334
>gb|BP598306.1|BP598306 BP598306 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-02-P03 3',
mRNA sequence
Length = 415
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 408 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 354
>gb|BP613712.1|BP613712 BP613712 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-94-B08 3',
mRNA sequence
Length = 429
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 408 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 354
>gb|BP615080.1|BP615080 BP615080 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-13-L23 3',
mRNA sequence
Length = 474
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 406 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 352
>gb|BP617996.1|BP617996 BP617996 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-G16 3',
mRNA sequence
Length = 420
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 407 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 353
>gb|BP789177.1|BP789177 BP789177 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-37-E09 3',
mRNA sequence
Length = 419
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 407 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 353
>gb|DN604705.1|DN604705 JCAt5g15840 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 840
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 213 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 154
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 153 aagacaatagggtatgcttcgaggaag 127
>gb|DR749728.1|DR749728 96-L020914-065-003-H12-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 003-H12, mRNA sequence
Length = 924
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 306 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 247
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 246 aagacaataaggtatgcttcgaggaag 220
>gb|DR749827.1|DR749827 92-L020593-065-004-D12-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 004-D12, mRNA sequence
Length = 829
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 228 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 174
>gb|DR750472.1|DR750472 53-L021268-065-003-H12S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 003-H12, mRNA sequence
Length = 606
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 327 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 268
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 267 aagacaataaggtatgcttcgaggaag 241
>emb|A50828.1| Sequence 1 from Patent WO9614414
Length = 1124
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 910 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 969
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 970 aagacaataaggtatgcttcgaggaag 996
>emb|A50831.1| Sequence 4 from Patent WO9614414
Length = 4201
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 3817 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 3876
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 3877 aagacaataaggtatgcttcgaggaag 3903
>gb|AY052697.1| Arabidopsis thaliana AT5g24930/F6A4_140 mRNA, complete cds
Length = 1424
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 954 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 1008
>emb|Y10556.1|ATDNACON Arabidopsis thaliana col1 gene for constans-like protein 1
Length = 8736
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 8352 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 8411
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 8412 aagacaataaggtatgcttcgaggaag 8438
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 284 ctgaggtacagggagaagaagaagagcaggaagtttgagaagac 327
||||| ||||| ||||||||||||| ||||| |||||||||||
Sbjct: 3412 ctgagatacagagagaagaagaagatgaggaaatttgagaagac 3455
>gb|AY070097.1| Arabidopsis thaliana At5g15840 mRNA sequence
Length = 1567
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 1181 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 1240
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 1241 aagacaataaggtatgcttcgaggaag 1267
>gb|BT001926.1| Arabidopsis thaliana clone C105432 putative CONSTANS protein
(At5g15840) mRNA, complete cds
Length = 1153
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 910 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 969
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 970 aagacaataaggtatgcttcgaggaag 996
>gb|AY086574.1| Arabidopsis thaliana clone 2588 mRNA, complete sequence
Length = 1344
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 971 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 1030
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 1031 aagacaataaggtatgcttcgaggaag 1057
>gb|AF069716.1|AF069716 Arabidopsis Thaliana BAC F6A4, Chromosome IV, near 60.5 cM, complete
sequence
Length = 99123
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 23006 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 22952
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 4954531 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 4954472
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 4954471 aagacaataaggtatgcttcgaggaag 4954445
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 284 ctgaggtacagggagaagaagaagagcaggaagtttgagaagac 327
||||| ||||| ||||||||||||| ||||| |||||||||||
Sbjct: 4959470 ctgagatacagagagaagaagaagatgaggaaatttgagaagac 4959427
>emb|AL391144.1|ATF14F8 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project)
Length = 96892
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 87157 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 87098
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 87097 aagacaataaggtatgcttcgaggaag 87071
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 284 ctgaggtacagggagaagaagaagagcaggaagtttgagaagac 327
||||| ||||| ||||||||||||| ||||| |||||||||||
Sbjct: 92096 ctgagatacagagagaagaagaagatgaggaaatttgagaagac 92053
>emb|X94937.1|ATCONSTAN A.thaliana mRNA for CONSTANS protein
Length = 1124
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 910 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 969
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 970 aagacaataaggtatgcttcgaggaag 996
>ref|NM_121589.1| Arabidopsis thaliana CO (CONSTANS); transcription factor/ zinc ion
binding AT5G15840 (CO) transcript variant AT5G15840.1
mRNA, complete cds
Length = 1344
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 971 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 1030
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 1031 aagacaataaggtatgcttcgaggaag 1057
>ref|NM_122402.2| Arabidopsis thaliana transcription factor/ zinc ion binding AT5G24930
mRNA, complete cds
Length = 1599
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 1122 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 1176
>ref|NM_001036810.1| Arabidopsis thaliana CO (CONSTANS); zinc ion binding AT5G15840 (CO)
transcript variant AT5G15840.2 mRNA, complete cds
Length = 1553
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 1181 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 1240
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 1241 aagacaataaggtatgcttcgaggaag 1267
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 69.9 bits (35), Expect = 8e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 8590762 tgaggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 8590816
Score = 69.9 bits (35), Expect = 8e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
|||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||| ||||||
Sbjct: 5171558 atggacagagaagccagggtcctgagatacagagagaagaggaagacaaggaaatttgag 5171499
Query: 323 aagaccatacggtatgcaacgaggaag 349
||||| ||| ||||||| ||||||||
Sbjct: 5171498 aagacaataaggtatgcttcgaggaag 5171472
Score = 50.1 bits (25), Expect = 8e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
|||||||||| ||||||| |||| |||||| ||||||||||| || || || || |||
Sbjct: 23373756 tgaggtacagagagaagagaaagaacaggaaatttgagaagacgattcgttacgcttcga 23373815
Query: 345 ggaagacgtacgcagaagcacggccgaggatcaagggacgcttcgcgaaaaga 397
|||| | || ||||| ||||||| |||||||| || || || |||||||||
Sbjct: 23373816 ggaaagcttatgcagagtcacggccaaggatcaaaggccggtttgcgaaaaga 23373868
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 284 ctgaggtacagggagaagaagaagagcaggaagtttgagaagac 327
||||| ||||| ||||||||||||| ||||| |||||||||||
Sbjct: 5176497 ctgagatacagagagaagaagaagatgaggaaatttgagaagac 5176454
>gb|AV786382.1|AV786382 AV786382 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-71-C02 3',
mRNA sequence
Length = 450
Score = 65.9 bits (33), Expect = 1e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 273 aggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgagaagaccatac 332
|||||||||| ||||| ||||| ||||||| ||||| ||||| ||||||||||| |||
Sbjct: 360 aggccagggtcctgagatacagagagaagaggaagacaaggaaatttgagaagacaataa 301
Query: 333 ggtatgcaacgaggaag 349
||||||| ||||||||
Sbjct: 300 ggtatgcttcgaggaag 284
>gb|AV518300.1|AV518300 AV518300 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD16a06F 3', mRNA
sequence
Length = 502
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| ||||| ||||| ||||| ||||||||||||| |||||||||||
Sbjct: 356 atggagagggaggctagggtcctgagatacagagagaagaagaagacaaggaagtttgac 297
Query: 323 aagac 327
|||||
Sbjct: 296 aagac 292
>gb|BP786561.1|BP786561 BP786561 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-99-M10 3',
mRNA sequence
Length = 418
Score = 65.9 bits (33), Expect = 1e-008
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 287 aggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 418 aggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 366
>emb|BX830243.1|CNS0A1QL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB68ZE05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1135
Score = 65.9 bits (33), Expect = 1e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 287 aggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 710 aggtacagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 762
>gb|AV803156.1|AV803156 AV803156 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-34-I02 3',
mRNA sequence
Length = 411
Score = 61.9 bits (31), Expect = 2e-007
Identities = 50/55 (90%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 410 tgaggtacagagagaaga-gaagaacaggaagtttgagaagactataaggtatgc 357
>gb|BP597094.1|BP597094 BP597094 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-37-P16 3',
mRNA sequence
Length = 433
Score = 61.9 bits (31), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagac 327
|||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 408 tgaggtacagagagaagaggaagaacaggaagtttgagaagac 366
>gb|BP639057.1|BP639057 BP639057 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-45-P05 3',
mRNA sequence
Length = 394
Score = 61.9 bits (31), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagac 327
|||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 304 tgaggtacagagagaagaggaagaacaggaagtttgagaagac 262
>gb|BP662300.1|BP662300 BP662300 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-10-P21 3',
mRNA sequence
Length = 424
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 289 gtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 402 gtacagagagaagaggaagaccaggaagtttgagaagactataaggtatgc 352
>gb|AV783249.1|AV783249 AV783249 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-N04 3',
mRNA sequence
Length = 674
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| ||||| ||||| ||||| ||||||||||||| ||||| |||||
Sbjct: 357 atggagagggaggctagggtcctgagatacagagagaagaagaagacaaggaaatttgac 298
Query: 323 aagac 327
|||||
Sbjct: 297 aagac 293
>gb|AV786560.1|AV786560 AV786560 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-72-A13 3',
mRNA sequence
Length = 422
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| ||||| ||||| ||||| ||||||||||||| ||||| |||||
Sbjct: 294 atggagagggaggctagggtcctgagatacagagagaagaagaagacaaggaaatttgac 235
Query: 323 aagac 327
|||||
Sbjct: 234 aagac 230
>gb|AV800647.1|AV800647 AV800647 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-24-P15 3',
mRNA sequence
Length = 402
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| ||||| ||||| ||||| ||||||||||||| ||||| |||||
Sbjct: 356 atggagagggaggctagggtcctgagatacagagagaagaagaagacaaggaaatttgac 297
Query: 323 aagac 327
|||||
Sbjct: 296 aagac 292
>gb|CB185952.1|CB185952 EST01143 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone VIR1-C6 similar
to CONSTANS-like protein 1, mRNA sequence
Length = 159
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 291 acagggagaagaagaagagcaggaagtttgagaagaccatacggtatgc 339
|||| ||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct: 159 acagagagaagaggaagaacaggaagtttgagaagactataaggtatgc 111
>gb|AV439712.1|AV439712 AV439712 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD13c01_f 3', mRNA
sequence
Length = 503
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 263 atggacagggaggccagggtgctgaggtacagggagaagaagaagagcaggaagtttgag 322
||||| |||||||| ||||| ||||| ||||| ||||||||||||| ||||| |||||
Sbjct: 361 atggagagggaggctagggtcctgagatacagagagaagaagaagacaaggaaatttgac 302
Query: 323 aagac 327
|||||
Sbjct: 301 aagac 297
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 519,096
Number of Sequences: 1013581
Number of extensions: 519096
Number of successful extensions: 48532
Number of sequences better than 0.5: 141
Number of HSP's better than 0.5 without gapping: 138
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 46615
Number of HSP's gapped (non-prelim): 1921
length of query: 1014
length of database: 908,940,872
effective HSP length: 20
effective length of query: 994
effective length of database: 888,669,252
effective search space: 883337236488
effective search space used: 883337236488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)