BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV825371.1|AV825371 AV825371 RAFL7 Arabidopsis thaliana ... 92 4e-016
dbj|AB079671.1| Arabidopsis thaliana AtPPC4;2 mRNA for prot... 92 4e-016
gb|AY050873.1| Arabidopsis thaliana putative protein phosph... 92 4e-016
gb|AY091209.1| Arabidopsis thaliana putative protein phosph... 92 4e-016
emb|AX507463.1| Sequence 2158 from Patent WO0216655 92 4e-016
gb|AY088966.1| Arabidopsis thaliana clone 11428 mRNA, compl... 92 4e-016
ref|NM_128064.2| Arabidopsis thaliana catalytic/ protein ph... 92 4e-016
gb|AC006585.8| Arabidopsis thaliana chromosome 2 clone F27C... 84 9e-014
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 84 9e-014
emb|BX827528.1|CNS0A3LW Arabidopsis thaliana Full-length cD... 80 1e-012
gb|AY057611.1| Arabidopsis thaliana AT4g31860/F11C18_60 mRN... 78 5e-012
gb|AY113024.1| Arabidopsis thaliana AT4g31860/F11C18_60 mRN... 78 5e-012
emb|AX505515.1| Sequence 210 from Patent WO0216655 78 5e-012
emb|AX651345.1| Sequence 133 from Patent WO03000898 78 5e-012
ref|NM_119336.2| Arabidopsis thaliana catalytic/ protein ph... 78 5e-012
ref|NM_202927.1| Arabidopsis thaliana catalytic/ protein ph... 78 5e-012
emb|BX826396.1|CNS0A41V Arabidopsis thaliana Full-length cD... 74 8e-011
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 72 3e-010
emb|AL049607.1|ATF11C18 Arabidopsis thaliana DNA chromosome... 72 3e-010
emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosom... 72 3e-010
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 72 3e-010
gb|CB256123.1|CB256123 01-E011664-027-006-A02-T7R MPIZ-ADIS... 60 1e-006
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 54 8e-005
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 52 3e-004
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 52 3e-004
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 52 3e-004
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 52 3e-004
gb|BP866694.1|BP866694 BP866694 RAFL21 Arabidopsis thaliana... 52 3e-004
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 0.001
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 50 0.001
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 50 0.001
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 50 0.001
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 50 0.001
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 50 0.001
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 50 0.001
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 50 0.001
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 50 0.001
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 50 0.001
gb|BP840177.1|BP840177 BP840177 RAFL19 Arabidopsis thaliana... 50 0.001
gb|AI993064.1|AI993064 701495210 A. thaliana, Ohio State cl... 48 0.005
gb|AV828923.1|AV828923 AV828923 RAFL9 Arabidopsis thaliana ... 48 0.005
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 48 0.005
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 48 0.005
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 48 0.005
gb|BP807583.1|BP807583 BP807583 RAFL16 Arabidopsis thaliana... 48 0.005
gb|BP815696.1|BP815696 BP815696 RAFL19 Arabidopsis thaliana... 48 0.005
gb|BP847824.1|BP847824 BP847824 RAFL21 Arabidopsis thaliana... 48 0.005
gb|BP855338.1|BP855338 BP855338 RAFL21 Arabidopsis thaliana... 48 0.005
emb|AX505609.1| Sequence 304 from Patent WO0216655 48 0.005
emb|AX507774.1| Sequence 2469 from Patent WO0216655 48 0.005
gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseud... 46 0.019
gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudo... 46 0.019
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 46 0.019
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 46 0.019
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 46 0.019
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 46 0.019
emb|CS137270.1| Sequence 241 from Patent WO2005047516 46 0.019
emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.074
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.074
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 44 0.074
gb|BX838513.1|BX838513 BX838513 Arabidopsis thaliana Flower... 44 0.074
gb|CF772990.1|CF772990 AG_FSL_10G03 Arabidopsis ag-1 35S:AG... 44 0.074
gb|AY063973.1| Arabidopsis thaliana putative protein phosph... 44 0.074
gb|AY117193.1| Arabidopsis thaliana putative protein phosph... 44 0.074
emb|BX818413.1|CNS0AB30 Arabidopsis thaliana Full-length cD... 44 0.074
emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mito... 44 0.074
emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35... 44 0.074
ref|NM_103517.2| Arabidopsis thaliana catalytic/ protein ph... 44 0.074
gb|CW793747.1|CW793747 WiscDsLox302B07 Arabidopsis thaliana... 42 0.29
emb|CT026116.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.29
gb|CD533343.1|CD533343 31E21 Arabidopsis Leaf Senescence Li... 42 0.29
gb|CB252389.1|CB252389 27-E015332-019-005-F07-T7R MPIZ-ADIS... 42 0.29
gb|BP846984.1|BP846984 BP846984 RAFL21 Arabidopsis thaliana... 42 0.29
gb|BP853705.1|BP853705 BP853705 RAFL21 Arabidopsis thaliana... 42 0.29
emb|AJ302053.1|ATH302053 Arabidopsis thaliana PP2C6 gene fo... 42 0.29
gb|AY061752.1| Arabidopsis thaliana AT5g36250/T30G6_11 mRNA... 42 0.29
gb|AY113035.1| Arabidopsis thaliana AT5g36250/T30G6_11 mRNA... 42 0.29
gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis tha... 42 0.29
emb|BX830911.1|CNS09ZF1 Arabidopsis thaliana Full-length cD... 42 0.29
emb|BX831312.1|CNS0A1NW Arabidopsis thaliana Full-length cD... 42 0.29
emb|BX826194.1|CNS0A7PM Arabidopsis thaliana Full-length cD... 42 0.29
emb|BX813494.1|CNS0ABZ9 Arabidopsis thaliana Full-length cD... 42 0.29
dbj|AB026661.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.29
gb|BT014892.1| Arabidopsis thaliana At3g55050 mRNA, complet... 42 0.29
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.29
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.29
gb|BT021925.1| Arabidopsis thaliana At3g55050 gene, complet... 42 0.29
emb|AL132970.2|ATT15C9 Arabidopsis thaliana DNA chromosome ... 42 0.29
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.29
ref|NM_123016.1| Arabidopsis thaliana catalytic/ protein ph... 42 0.29
ref|NM_105450.2| Arabidopsis thaliana catalytic/ protein ph... 42 0.29
ref|NM_115363.3| Arabidopsis thaliana catalytic/ protein ph... 42 0.29
ref|NM_202709.1| Arabidopsis thaliana catalytic/ protein ph... 42 0.29
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.29
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.29
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.29
>gb|AV825371.1|AV825371 AV825371 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-08-N19 5', mRNA
sequence
Length = 600
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 559 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 500
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagct 1316
||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct: 499 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattctaaagaatgct 440
Query: 1317 ct 1318
||
Sbjct: 439 ct 438
Score = 60.0 bits (30), Expect = 1e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||||| || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 376 agatacttggcacagaactttgcaacgactttacctccatggccatcatacacaccgaag 317
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || | ||| | ||| || ||||||||||| || |||
Sbjct: 316 aacgatgtcttatcatcaagatcaagaattgcagcatgcgcgtcttccatggtagcgcgc 257
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 256 caaccttgcataga 243
>dbj|AB079671.1| Arabidopsis thaliana AtPPC4;2 mRNA for protein phosphatase 2C,
complete cds
Length = 1463
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 540 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 481
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagct 1316
||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct: 480 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattctaaagaatgct 421
Query: 1317 ct 1318
||
Sbjct: 420 ct 419
Score = 60.0 bits (30), Expect = 1e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||||| || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 357 agatacttggcacagaactttgcaacgactttacctccatggccatcatacacaccgaag 298
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || | ||| | ||| || ||||||||||| || |||
Sbjct: 297 aacgatgtcttatcatcaagatcaagaattgcagcatgcgcgtcttccatggtagcgcgc 238
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 237 caaccttgcataga 224
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 732 tggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctaca 791
||||||||||| || || | ||||||||||| || ||||| || ||||| || || |||
Sbjct: 1005 tggataaaatcaactagttcctggcttgacatacaatcccatattccatcgcaagcaaca 946
Query: 792 acaacaaagtcgtcatcatc 811
|||| |||||| ||||||||
Sbjct: 945 acaagaaagtcatcatcatc 926
>gb|AY050873.1| Arabidopsis thaliana putative protein phosphatase 2C (At2g25070)
mRNA, complete cds
Length = 1522
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 558 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 499
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagct 1316
||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct: 498 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattctaaagaatgct 439
Query: 1317 ct 1318
||
Sbjct: 438 ct 437
Score = 60.0 bits (30), Expect = 1e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||||| || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 375 agatacttggcacagaactttgcaacgactttacctccatggccatcatacacaccgaag 316
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || | ||| | ||| || ||||||||||| || |||
Sbjct: 315 aacgatgtcttatcatcaagatcaagaattgcagcatgcgcgtcttccatggtagcgcgc 256
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 255 caaccttgcataga 242
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 732 tggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctaca 791
||||||||||| || || | ||||||||||| || ||||| || ||||| || || |||
Sbjct: 1023 tggataaaatcaactagttcctggcttgacatacaatcccatattccatcgcaagcaaca 964
Query: 792 acaacaaagtcgtcatcatc 811
|||| |||||| ||||||||
Sbjct: 963 acaagaaagtcatcatcatc 944
>gb|AY091209.1| Arabidopsis thaliana putative protein phosphatase 2C (At2g25070)
mRNA, complete cds
Length = 1099
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 398 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 339
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagct 1316
||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct: 338 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattctaaagaatgct 279
Query: 1317 ct 1318
||
Sbjct: 278 ct 277
Score = 60.0 bits (30), Expect = 1e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||||| || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 215 agatacttggcacagaactttgcaacgactttacctccatggccatcatacacaccgaag 156
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || | ||| | ||| || ||||||||||| || |||
Sbjct: 155 aacgatgtcttatcatcaagatcaagaattgcagcatgcgcgtcttccatggtagcgcgc 96
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 95 caaccttgcataga 82
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 732 tggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctaca 791
||||||||||| || || | ||||||||||| || ||||| || ||||| || || |||
Sbjct: 863 tggataaaatcaactagttcctggcttgacatacaatcccatattccatcgcaagcaaca 804
Query: 792 acaacaaagtcgtcatcatc 811
|||| |||||| ||||||||
Sbjct: 803 acaagaaagtcatcatcatc 784
>emb|AX507463.1| Sequence 2158 from Patent WO0216655
Length = 1068
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 398 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 339
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagct 1316
||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct: 338 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattctaaagaatgct 279
Query: 1317 ct 1318
||
Sbjct: 278 ct 277
Score = 60.0 bits (30), Expect = 1e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||||| || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 215 agatacttggcacagaactttgcaacgactttacctccatggccatcatacacaccgaag 156
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || | ||| | ||| || ||||||||||| || |||
Sbjct: 155 aacgatgtcttatcatcaagatcaagaattgcagcatgcgcgtcttccatggtagcgcgc 96
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 95 caaccttgcataga 82
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 732 tggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctaca 791
||||||||||| || || | ||||||||||| || ||||| || ||||| || || |||
Sbjct: 863 tggataaaatcaactagttcctggcttgacatacaatcccatattccatcgcaagcaaca 804
Query: 792 acaacaaagtcgtcatcatc 811
|||| |||||| ||||||||
Sbjct: 803 acaagaaagtcatcatcatc 784
>gb|AY088966.1| Arabidopsis thaliana clone 11428 mRNA, complete sequence
Length = 1458
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 568 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 509
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagct 1316
||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct: 508 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattctaaagaatgct 449
Query: 1317 ct 1318
||
Sbjct: 448 ct 447
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 732 tggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctaca 791
||||||||||| || || | ||||||||||| || ||||| || ||||| || || |||
Sbjct: 1033 tggataaaatcaactagttcctggcttgacatacaatcccatattccatcgcaagcaaca 974
Query: 792 acaacaaagtcgtcatcatc 811
|||| |||||| ||||||||
Sbjct: 973 acaagaaagtcatcatcatc 954
>ref|NM_128064.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C/ protein
serine/threonine phosphatase AT2G25070 mRNA, complete cds
Length = 1517
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 570 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 511
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagct 1316
||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct: 510 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattctaaagaatgct 451
Query: 1317 ct 1318
||
Sbjct: 450 ct 449
Score = 60.0 bits (30), Expect = 1e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||||| || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 387 agatacttggcacagaactttgcaacgactttacctccatggccatcatacacaccgaag 328
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || | ||| | ||| || ||||||||||| || |||
Sbjct: 327 aacgatgtcttatcatcaagatcaagaattgcagcatgcgcgtcttccatggtagcgcgc 268
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 267 caaccttgcataga 254
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 732 tggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctaca 791
||||||||||| || || | ||||||||||| || ||||| || ||||| || || |||
Sbjct: 1035 tggataaaatcaactagttcctggcttgacatacaatcccatattccatcgcaagcaaca 976
Query: 792 acaacaaagtcgtcatcatc 811
|||| |||||| ||||||||
Sbjct: 975 acaagaaagtcatcatcatc 956
>gb|AC006585.8| Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete
sequence
Length = 103495
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 2364 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 2305
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattct 1306
||| || |||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 2304 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattct 2255
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 83.8 bits (42), Expect = 9e-014
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 1197 cttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagt 1256
||||| ||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct: 10671707 cttggtgaccatataaatccttcaatcatgccgctaaatttgttcatcttgtcgccaagt 10671766
Query: 1257 gcagatagttctcgccaacctctctgtccttgcatcatttcatccattct 1306
||| || |||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 10671767 acagctaactctcgccatcctctttgtccttgcatcatgtcatccattct 10671816
>emb|BX827528.1|CNS0A3LW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS6ZG06 of Adult vegetative tissue of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1408
Score = 79.8 bits (40), Expect = 1e-012
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 551 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 492
Query: 1275 cctctctgtccttgcatcatttcatccattctgaagaaagctct 1318
||||| |||||||||||||| |||||||||||||| || |||||
Sbjct: 491 cctctttgtccttgcatcatctcatccattctgaaaaatgctct 448
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 848 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 789
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 788 ttctcagcttcaagatctggtttgtg 763
>gb|AY057611.1| Arabidopsis thaliana AT4g31860/F11C18_60 mRNA, complete cds
Length = 1531
Score = 77.8 bits (39), Expect = 5e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 591 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 532
Query: 1275 cctctctgtccttgcatcatttcatccattctgaa 1309
||||| |||||||||||||| ||||||||||||||
Sbjct: 531 cctctttgtccttgcatcatctcatccattctgaa 497
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 888 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 829
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 828 ttctcagcttcaagatctggtttgtg 803
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 331 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 272
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 271 atgattttcgccatcttctgagaacttgtctgtttttggagtac 228
>gb|AY113024.1| Arabidopsis thaliana AT4g31860/F11C18_60 mRNA, complete cds
Length = 1074
Score = 77.8 bits (39), Expect = 5e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 380 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 321
Query: 1275 cctctctgtccttgcatcatttcatccattctgaa 1309
||||| |||||||||||||| ||||||||||||||
Sbjct: 320 cctctttgtccttgcatcatctcatccattctgaa 286
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 677 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 618
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 617 ttctcagcttcaagatctggtttgtg 592
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 120 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 61
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 60 atgattttcgccatcttctgagaacttgtctgtttttggagtac 17
>emb|AX505515.1| Sequence 210 from Patent WO0216655
Length = 1074
Score = 77.8 bits (39), Expect = 5e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 380 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 321
Query: 1275 cctctctgtccttgcatcatttcatccattctgaa 1309
||||| |||||||||||||| ||||||||||||||
Sbjct: 320 cctctttgtccttgcatcatctcatccattctgaa 286
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 677 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 618
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 617 ttctcagcttcaagatctggtttgtg 592
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 120 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 61
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 60 atgattttcgccatcttctgagaacttgtctgtttttggagtac 17
>emb|AX651345.1| Sequence 133 from Patent WO03000898
Length = 1074
Score = 77.8 bits (39), Expect = 5e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 380 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 321
Query: 1275 cctctctgtccttgcatcatttcatccattctgaa 1309
||||| |||||||||||||| ||||||||||||||
Sbjct: 320 cctctttgtccttgcatcatctcatccattctgaa 286
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 677 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 618
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 617 ttctcagcttcaagatctggtttgtg 592
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 120 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 61
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 60 atgattttcgccatcttctgagaacttgtctgtttttggagtac 17
>ref|NM_119336.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT4G31860
transcript variant AT4G31860.1 mRNA, complete cds
Length = 2023
Score = 77.8 bits (39), Expect = 5e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 591 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 532
Query: 1275 cctctctgtccttgcatcatttcatccattctgaa 1309
||||| |||||||||||||| ||||||||||||||
Sbjct: 531 cctctttgtccttgcatcatctcatccattctgaa 497
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 888 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 829
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 828 ttctcagcttcaagatctggtttgtg 803
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 331 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 272
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 271 atgattttcgccatcttctgagaacttgtctgtttttggagtac 228
>ref|NM_202927.1| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT4G31860
transcript variant AT4G31860.2 mRNA, complete cds
Length = 2108
Score = 77.8 bits (39), Expect = 5e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 591 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 532
Query: 1275 cctctctgtccttgcatcatttcatccattctgaa 1309
||||| |||||||||||||| ||||||||||||||
Sbjct: 531 cctctttgtccttgcatcatctcatccattctgaa 497
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 888 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 829
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 828 ttctcagcttcaagatctggtttgtg 803
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 331 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 272
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 271 atgattttcgccatcttctgagaacttgtctgtttttggagtac 228
>emb|BX826396.1|CNS0A41V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB21ZB07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1469
Score = 73.8 bits (37), Expect = 8e-011
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 547 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 488
Query: 1275 cctctctgtccttgcatcatttcatccattctg 1307
||||| |||||||||||||| ||||||||||||
Sbjct: 487 cctctttgtccttgcatcatctcatccattctg 455
Score = 58.0 bits (29), Expect = 5e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 951 aagccccctgctttcattatcctttctctctcagctgcaagctctggtttgtg 1003
||||| || ||||||| |||||||||| |||||||| |||| |||||||||||
Sbjct: 812 aagccaccagctttcaatatcctttctttctcagcttcaagatctggtttgtg 760
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 290 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 231
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 230 atgattttcgccatcttctgagaacttgtctgtttttggagtac 187
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 11320666 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 11320725
Query: 1275 cctctctgtccttgcatcatttcatccattct 1306
||||| |||||||||||||| |||||||||||
Sbjct: 11320726 cctctttgtccttgcatcatctcatccattct 11320757
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 11320199 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 11320258
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 11320259 ttctcagcttcaagatctggtttgtg 11320284
>emb|AL049607.1|ATF11C18 Arabidopsis thaliana DNA chromosome 4, BAC clone F11C18 (ESSA project)
Length = 111517
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 34495 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 34554
Query: 1275 cctctctgtccttgcatcatttcatccattct 1306
||||| |||||||||||||| |||||||||||
Sbjct: 34555 cctctttgtccttgcatcatctcatccattct 34586
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 34028 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 34087
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 34088 ttctcagcttcaagatctggtttgtg 34113
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
Length = 196242
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 173834 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 173893
Query: 1275 cctctctgtccttgcatcatttcatccattct 1306
||||| |||||||||||||| |||||||||||
Sbjct: 173894 cctctttgtccttgcatcatctcatccattct 173925
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 173367 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 173426
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 173427 ttctcagcttcaagatctggtttgtg 173452
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1215 ccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaa 1274
||||| ||||| ||||| ||||| || |||||||| |||||| | | || ||||||||
Sbjct: 15407895 ccttcaatcatcccactgaacttattgattttgtcaccaagtactgctaactctcgccac 15407954
Query: 1275 cctctctgtccttgcatcatttcatccattct 1306
||||| |||||||||||||| |||||||||||
Sbjct: 15407955 cctctttgtccttgcatcatctcatccattct 15407986
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 918 tttaaacttccatttactcgtcccatatggatgaagccccctgctttcattatcctttct 977
||||| |||||||| ||||| || ||| || ||||| || ||||||| ||||||||||
Sbjct: 15407428 tttaagcttccattgactcgccctgcatgtataaagccaccagctttcaatatcctttct 15407487
Query: 978 ctctcagctgcaagctctggtttgtg 1003
|||||||| |||| |||||||||||
Sbjct: 15407488 ttctcagcttcaagatctggtttgtg 15407513
>gb|CB256123.1|CB256123 01-E011664-027-006-A02-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772A026Q 5-PRIME, mRNA sequence
Length = 465
Score = 60.0 bits (30), Expect = 1e-006
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||||| || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 357 agatacttggcacagaactttgcaacgactttacctccatggccatcatacacaccgaag 298
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || | ||| | ||| || ||||||||||| || |||
Sbjct: 297 aacgatgtcttatcatcaagatcaagaattgcagcatgcgcgtcttccatggtagcgcgc 238
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 237 caaccttgcataga 224
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1275 cctctctgtccttgcatcatttcatccattctgaagaaagctct 1318
||||| |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 462 cctctttgtccttgcatcatgtcatccattctaaagaatgctct 419
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 54.0 bits (27), Expect = 8e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1573 gagtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||||
Sbjct: 380 gagtacctgcccgggcggccgctcgaa 406
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 52.0 bits (26), Expect = 3e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||||||
Sbjct: 52 agtacctgcccgggcggccgctcgaa 27
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC4-H4 similar to
putative protein with homology to rubisco small subunit,
mRNA sequence
Length = 370
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1570 ttggagtacctgcccgggcggccgctcgaa 1599
|||| |||||||||||||||||||||||||
Sbjct: 89 ttggggtacctgcccgggcggccgctcgaa 60
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 52.0 bits (26), Expect = 3e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||||||
Sbjct: 328 agtacctgcccgggcggccgctcgaa 353
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 52.0 bits (26), Expect = 3e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||||||
Sbjct: 331 agtacctgcccgggcggccgctcgaa 356
>gb|BP866694.1|BP866694 BP866694 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-78-J15 5',
mRNA sequence
Length = 397
Score = 52.0 bits (26), Expect = 3e-004
Identities = 108/134 (80%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 1380 agatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaag 1439
||||| || |||||| | || ||||||||| | |||||||| |||||| | ||||| |||
Sbjct: 325 agatacttggcacaggactttgcaacgactttacctccatggccatcatacacaccgaag 266
Query: 1440 aatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgc 1499
|| | ||||| ||||||||| || ||||| | ||| || ||||||||||| || |||
Sbjct: 265 aacgatgtcttatcatcaagatcaag-aatgcagcatgcgcgtcttccatggtagcgcgc 207
Query: 1500 catccttgcataga 1513
|| |||||||||||
Sbjct: 206 caaccttgcataga 193
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 52 gtacctgcccgggcggccgctcgaa 28
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to small
nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 239 gtacctgcccgggcggccgctcgaa 263
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 304 gtacctgcccgggcggccgctcgaa 328
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to Lhca2
chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 81 gtacctgcccgggcggccgctcgaa 57
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC1-C2 similar to
putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 59 gtacctgcccgggcggccgctcgaa 35
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 366 gtacctgcccgggcggccgctcgaa 390
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 397 gtacctgcccgggcggccgctcgaa 421
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 278 gtacctgcccgggcggccgctcgaa 302
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA sequence
Length = 271
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 247 gtacctgcccgggcggccgctcgaa 271
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||||
Sbjct: 122 agtacctgcccgggcggccgctcga 146
>gb|BP840177.1|BP840177 BP840177 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-29-G09 5',
mRNA sequence
Length = 369
Score = 50.1 bits (25), Expect = 0.001
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 1401 gcaacgactcttcctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaaga 1460
||||||||| | |||||||| |||||| | ||||| ||||| | ||||| |||||||
Sbjct: 366 gcaacgactttacctccatggccatcatacacaccgaagaacgatgtcttatcatcaaga 307
Query: 1461 tctagcaatgctgaatgagcatcttccatggttgctcgccatccttgcataga 1513
|| || | ||| | ||| || ||||||||||| || ||||| |||||||||||
Sbjct: 306 tcaagaattgcagcatgcgcgtcttccatggtagcgcgccaaccttgcataga 254
>gb|AI993064.1|AI993064 701495210 A. thaliana, Ohio State clone set Arabidopsis thaliana cDNA
clone 701495210, mRNA sequence
Length = 439
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 311 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 252
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 251 atgattttcgccatcttctgagaacttgtctgtttttggagtac 208
>gb|AV828923.1|AV828923 AV828923 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-35-G17 5', mRNA
sequence
Length = 411
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 332 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 273
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 272 atgattttcgccatcttctgagaacttgtctgtttttggagtac 229
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 33 gtacctgcccgggcggccgctcga 10
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 213 gtacctgcccgggcggccgctcga 236
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 452 gtacctgcccgggcggccgctcga 475
>gb|BP807583.1|BP807583 BP807583 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-14-G05 5',
mRNA sequence
Length = 359
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 330 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 271
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 270 atgattttcgccatcttctgagaacttgtctgtttttggagtac 227
>gb|BP815696.1|BP815696 BP815696 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-39-K03 5',
mRNA sequence
Length = 365
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 271 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 212
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 211 atgattttcgccatcttctgagaacttgtctgtttttggagtac 168
>gb|BP847824.1|BP847824 BP847824 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-03-E04 5',
mRNA sequence
Length = 384
Score = 48.1 bits (24), Expect = 0.005
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 1402 caacgactcttcctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagat 1461
|||||||| | |||||||| |||||| | ||||| ||||| | ||||| ||||||||
Sbjct: 351 caacgactttacctccatggccatcatacacaccgaagaacgatgtcttatcatcaagat 292
Query: 1462 ctagcaatgctgaatgagcatcttccatggttgctcgccatccttgcataga 1513
| || | ||| | ||| || ||||||||||| || ||||| |||||||||||
Sbjct: 291 ccagaattgcagcatgcgcgtcttccatggtagcgcgccaaccttgcataga 240
>gb|BP855338.1|BP855338 BP855338 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-26-F05 5',
mRNA sequence
Length = 403
Score = 48.1 bits (24), Expect = 0.005
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1475 atgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtct 1534
||||||||||||||||| || ||||| ||||||||||| || | ||| | | ||| |
Sbjct: 340 atgagcatcttccatggacgcacgccaaccttgcatagaggataaaccatatctgagttt 281
Query: 1535 atcattttctccattttcagatagcttgtcagtttttggagtac 1578
|| |||||| |||| ||| || | |||||| |||||||||||||
Sbjct: 280 atgattttcgccatcttctgagaacttgtctgtttttggagtac 237
>emb|AX505609.1| Sequence 304 from Patent WO0216655
Length = 414
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1576 tacctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||||
Sbjct: 29 tacctgcccgggcggccgctcgaa 6
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 797,475
Number of Sequences: 1013581
Number of extensions: 797475
Number of successful extensions: 59398
Number of sequences better than 0.5: 99
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 56627
Number of HSP's gapped (non-prelim): 2776
length of query: 1599
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1578
effective length of database: 887,655,671
effective search space: 1400720648838
effective search space used: 1400720648838
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)