BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2647051.2.1
         (627 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL464141.1|CL464141  SAIL_1214_B03.v1 SAIL Collection Ara...    42   0.11 
gb|BH236152.1|BH236152  ATZKD54TR ATZK Arabidopsis thaliana ...    40   0.45 
gb|CL512814.1|CL512814  SAIL_866_H06.v2 SAIL Collection Arab...    40   0.45 
gb|CL514339.1|CL514339  SAIL_888_C10.v2 SAIL Collection Arab...    40   0.45 

>gb|CL464141.1|CL464141 SAIL_1214_B03.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_1214_B03.v1, DNA sequence
          Length = 747

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 321 gaggcgaggagcgggcgggcgggcgagcg 349
           |||| |||||||||||||| |||||||||
Sbjct: 472 gaggagaggagcgggcgggggggcgagcg 500



>gb|BH236152.1|BH236152 ATZKD54TR ATZK Arabidopsis thaliana genomic clone ATZKD54, DNA
           sequence
          Length = 726

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 123 cgtcggtgccggcggccggcggcg 146
           |||||| |||||||||||||||||
Sbjct: 521 cgtcggcgccggcggccggcggcg 544



>gb|CL512814.1|CL512814 SAIL_866_H06.v2 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_866_H06.v2, DNA sequence
          Length = 1769

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 270 ccgccgcgcccgccgacgcgccgc 293
           ||||||||||||||| ||||||||
Sbjct: 236 ccgccgcgcccgccgccgcgccgc 213



>gb|CL514339.1|CL514339 SAIL_888_C10.v2 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_888_C10.v2, DNA sequence
          Length = 1028

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  cctccatcctcttcacgcac 82
           ||||||||||||||||||||
Sbjct: 898 cctccatcctcttcacgcac 917



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 174,366
Number of Sequences: 1013581
Number of extensions: 174366
Number of successful extensions: 13486
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13478
Number of HSP's gapped (non-prelim): 8
length of query: 627
length of database: 908,940,872
effective HSP length: 20
effective length of query: 607
effective length of database: 888,669,252
effective search space: 539422235964
effective search space used: 539422235964
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)