BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR750029.1|DR750029 78-L022529-065-010-F10-SeLA MPIZ-ADI... 90 1e-015
gb|DR750030.1|DR750030 78-L022530-065-010-F10-SeLB MPIZ-ADI... 90 1e-015
emb|X53579.1|ATAGAMSG A.thaliana agamous (AG) gene 90 1e-015
ref|NM_118013.2| Arabidopsis thaliana AG (AGAMOUS); transcr... 90 1e-015
gb|M55550.1|ATHAGL1A Arabidopsis thaliana transcription fac... 66 2e-008
gb|AY086196.1| Arabidopsis thaliana clone 22339 mRNA, compl... 66 2e-008
ref|NM_115740.2| Arabidopsis thaliana SHP1 (SHATTERPROOF 1)... 66 2e-008
gb|DR751298.1|DR751298 13-L022242-065-008-E02-SeLA MPIZ-ADI... 60 1e-006
gb|DR751299.1|DR751299 13-L022243-065-008-E02-SeLB MPIZ-ADI... 60 1e-006
gb|M55553.1|ATHAGL5A Arabidopsis thaliana transcription fac... 60 1e-006
emb|AX380953.1| Sequence 7 from Patent WO0210415 60 1e-006
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 60 1e-006
emb|AL021711.2|ATF13C5 Arabidopsis thaliana DNA chromosome ... 60 1e-006
emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosom... 60 1e-006
ref|NM_180046.1| Arabidopsis thaliana SHP2 (SHATTERPROOF 2)... 60 1e-006
ref|NM_129844.3| Arabidopsis thaliana SHP2 (SHATTERPROOF 2)... 60 1e-006
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 60 1e-006
gb|BZ663057.1|BZ663057 SALK_026551.47.05.x Arabidopsis thal... 56 2e-005
gb|BE038223.1|BE038223 AA10E11 AA Arabidopsis thaliana cDNA... 56 2e-005
gb|DR750275.1|DR750275 65-L020098-065-001-A09-SeLA MPIZ-ADI... 56 2e-005
gb|DR750276.1|DR750276 65-L020099-065-001-A09-SeLB MPIZ-ADI... 56 2e-005
gb|AF211171.1|AF211171 Arabidopsis thaliana short vegetativ... 56 2e-005
emb|AX052687.1| Sequence 1 from Patent WO0070053 56 2e-005
emb|AX052689.1| Sequence 3 from Patent WO0070053 56 2e-005
emb|AX052691.1| Sequence 5 from Patent WO0070053 56 2e-005
emb|AX052692.1| Sequence 6 from Patent WO0070053 56 2e-005
emb|AX052693.1| Sequence 7 from Patent WO0070053 56 2e-005
emb|AX320930.1| Sequence 6 from Patent WO0179517 56 2e-005
emb|AX506507.1| Sequence 1202 from Patent WO0216655 56 2e-005
gb|AC006592.6| Arabidopsis thaliana chromosome 2 clone F14M... 56 2e-005
gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D1... 56 2e-005
emb|BX842431.1|CNS0A8GM Arabidopsis thaliana Full-length cD... 56 2e-005
emb|BX842440.1|CNS0A8OH Arabidopsis thaliana Full-length cD... 56 2e-005
emb|BX842447.1|CNS0A8UX Arabidopsis thaliana Full-length cD... 56 2e-005
emb|BX842456.1|CNS0A915 Arabidopsis thaliana Full-length cD... 56 2e-005
gb|AY727646.1| Arabidopsis thaliana ecotype Ler-0 SHATTERPR... 56 2e-005
gb|AY727647.1| Arabidopsis thaliana ecotype Wassilewskija S... 56 2e-005
gb|AY727648.1| Arabidopsis thaliana ecotype Co-1 SHATTERPRO... 56 2e-005
gb|AY727649.1| Arabidopsis thaliana ecotype Es-0 SHATTERPRO... 56 2e-005
gb|AY727650.1| Arabidopsis thaliana ecotype Ita-0 SHATTERPR... 56 2e-005
gb|AY727651.1| Arabidopsis thaliana ecotype Kas-1 SHATTERPR... 56 2e-005
gb|AY727652.1| Arabidopsis thaliana ecotype Li-3 SHATTERPRO... 56 2e-005
gb|AY727653.1| Arabidopsis thaliana ecotype Lu-1 SHATTERPRO... 56 2e-005
gb|AY727654.1| Arabidopsis thaliana ecotype Mt-0 SHATTERPRO... 56 2e-005
gb|AY727655.1| Arabidopsis thaliana ecotype PLA-0 SHATTERPR... 56 2e-005
gb|AY727656.1| Arabidopsis thaliana ecotype Pog-0 SHATTERPR... 56 2e-005
gb|AY727657.1| Arabidopsis thaliana ecotype Tsu-1 SHATTERPR... 56 2e-005
gb|AY727658.1| Arabidopsis thaliana ecotype PHW-1 SHATTERPR... 56 2e-005
gb|AY727659.1| Arabidopsis thaliana ecotype PHW-33 SHATTERP... 56 2e-005
gb|AY727660.1| Arabidopsis thaliana ecotype Kondara SHATTER... 56 2e-005
gb|AY727661.1| Arabidopsis thaliana ecotype An-2 SHATTERPRO... 56 2e-005
gb|AY727662.1| Arabidopsis thaliana ecotype Br-0 SHATTERPRO... 56 2e-005
gb|AY727663.1| Arabidopsis thaliana ecotype Cha-0 SHATTERPR... 56 2e-005
gb|AY727664.1| Arabidopsis thaliana ecotype Di-0 SHATTERPRO... 56 2e-005
gb|AY727665.1| Arabidopsis thaliana ecotype Est-1 SHATTERPR... 56 2e-005
gb|AY727666.1| Arabidopsis thaliana ecotype Kl-5 SHATTERPRO... 56 2e-005
gb|AY727667.1| Arabidopsis thaliana ecotype Ko-2 SHATTERPRO... 56 2e-005
gb|AY727668.1| Arabidopsis thaliana ecotype Lip-0 SHATTERPR... 56 2e-005
gb|AY727669.1| Arabidopsis thaliana ecotype 9481B SHATTERPR... 56 2e-005
ref|NM_127820.2| Arabidopsis thaliana SVP (SHORT VEGETATIVE... 56 2e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 56 2e-005
gb|BT003841.1| Arabidopsis thaliana clone RAFL15-25-E19 (R2... 52 3e-004
gb|CF773945.1|CF773945 AG_FSL_25A05 Arabidopsis ag-1 35S:AG... 50 0.001
dbj|AK175241.1| Arabidopsis thaliana mRNA for short vegegat... 48 0.004
emb|AX320929.1| Sequence 5 from Patent WO0179517 46 0.016
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.016
gb|AY727622.1| Arabidopsis thaliana ecotype Ler-0 SHATTERPR... 46 0.016
gb|AY727623.1| Arabidopsis thaliana ecotype Wassilewskija S... 46 0.016
gb|AY727624.1| Arabidopsis thaliana ecotype Co-1 SHATTERPRO... 46 0.016
gb|AY727625.1| Arabidopsis thaliana ecotype Es-0 SHATTERPRO... 46 0.016
gb|AY727626.1| Arabidopsis thaliana ecotype Ita-0 SHATTERPR... 46 0.016
gb|AY727627.1| Arabidopsis thaliana ecotype Kas-1 SHATTERPR... 46 0.016
gb|AY727628.1| Arabidopsis thaliana ecotype Li-3 SHATTERPRO... 46 0.016
gb|AY727629.1| Arabidopsis thaliana ecotype Lu-1 SHATTERPRO... 46 0.016
gb|AY727630.1| Arabidopsis thaliana ecotype Mt-0 SHATTERPRO... 46 0.016
gb|AY727631.1| Arabidopsis thaliana ecotype PLA-0 SHATTERPR... 46 0.016
gb|AY727632.1| Arabidopsis thaliana ecotype Pog-0 SHATTERPR... 46 0.016
gb|AY727633.1| Arabidopsis thaliana ecotype Tsu-1 SHATTERPR... 46 0.016
gb|AY727634.1| Arabidopsis thaliana ecotype PHW-1 SHATTERPR... 46 0.016
gb|AY727635.1| Arabidopsis thaliana ecotype PHW-33 SHATTERP... 46 0.016
gb|AY727636.1| Arabidopsis thaliana ecotype Kondara SHATTER... 46 0.016
gb|AY727637.1| Arabidopsis thaliana ecotype An-2 SHATTERPRO... 46 0.016
gb|AY727638.1| Arabidopsis thaliana ecotype Br-0 SHATTERPRO... 46 0.016
gb|AY727639.1| Arabidopsis thaliana ecotype Di-0 SHATTERPRO... 46 0.016
gb|AY727640.1| Arabidopsis thaliana ecotype Est-1 SHATTERPR... 46 0.016
gb|AY727641.1| Arabidopsis thaliana ecotype Kl-5 SHATTERPRO... 46 0.016
gb|AY727642.1| Arabidopsis thaliana ecotype Ko-2 SHATTERPRO... 46 0.016
gb|AY727643.1| Arabidopsis thaliana ecotype Lip-0 SHATTERPR... 46 0.016
gb|AY727644.1| Arabidopsis thaliana ecotype 9481B SHATTERPR... 46 0.016
emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome... 46 0.016
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.016
emb|AJ598352.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.063
gb|CL513311.1|CL513311 SAIL_873_E11.v1 SAIL Collection Arab... 44 0.063
gb|AY727601.1| Arabidopsis thaliana ecotype Ita-0 SEPALLATA... 44 0.063
gb|AY727604.1| Arabidopsis thaliana ecotype Lu-1 SEPALLATA2... 44 0.063
gb|AY727610.1| Arabidopsis thaliana ecotype PHW-33 SEPALLAT... 44 0.063
gb|AY727614.1| Arabidopsis thaliana ecotype Cha-0 SEPALLATA... 44 0.063
gb|AY727618.1| Arabidopsis thaliana ecotype Ko-2 SEPALLATA2... 44 0.063
gb|CL500072.1|CL500072 SAIL_679_A01.v2 SAIL Collection Arab... 42 0.25
>gb|DR750029.1|DR750029 78-L022529-065-010-F10-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 010-F10, mRNA sequence
Length = 910
Score = 89.7 bits (45), Expect = 1e-015
Identities = 111/133 (83%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || ||||| || || || ||||| |||||||| |||
Sbjct: 236 ctcaagaaagcttacgagctctctgttctctgtgatgctgaagtcgcactcatcgttttc 295
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccattgagagg 449
|| ||||| || || ||||| |||||| | |||||||| || || || || |||||||||
Sbjct: 296 tctagccgtggtcgtctctatgagtactctaacaacagtgtaaaaggtactattgagagg 355
Query: 450 tacaagaaggcaa 462
|||||||||||||
Sbjct: 356 tacaagaaggcaa 368
>gb|DR750030.1|DR750030 78-L022530-065-010-F10-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 010-F10, mRNA sequence
Length = 838
Score = 89.7 bits (45), Expect = 1e-015
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || ||||| || || || ||||| |||||||| |||
Sbjct: 747 ctcaagaaagcttacgagctctctgttctctgtgatgctgaagtcgcactcatcgttttc 688
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccattgagagg 449
|| ||||| || || ||||| |||||| | |||||||| || || || || |||||||||
Sbjct: 687 tctagccgtggtcgtctctatgagtactctaacaacagtgtaaaaggtactattgagagg 628
Query: 450 tacaagaaggcaa 462
|||||||||||||
Sbjct: 627 tacaagaaggcaa 615
>emb|X53579.1|ATAGAMSG A.thaliana agamous (AG) gene
Length = 1458
Score = 89.7 bits (45), Expect = 1e-015
Identities = 111/133 (83%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || ||||| || || || ||||| |||||||| |||
Sbjct: 647 ctcaagaaagcttacgagctctctgttctctgtgatgctgaagtcgcactcatcgttttc 706
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccattgagagg 449
|| ||||| || || ||||| |||||| | |||||||| || || || || |||||||||
Sbjct: 707 tctagccgtggtcgtctctatgagtactctaacaacagtgtaaaaggtactattgagagg 766
Query: 450 tacaagaaggcaa 462
|||||||||||||
Sbjct: 767 tacaagaaggcaa 779
>ref|NM_118013.2| Arabidopsis thaliana AG (AGAMOUS); transcription factor AT4G18960
(AG) mRNA, partial cds
Length = 1532
Score = 89.7 bits (45), Expect = 1e-015
Identities = 111/133 (83%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || || || || || || ||||| ||||||||||||
Sbjct: 639 ctcaagaaagcttacgagctctctgttctttgtgatgctgaagtcgcactcatcgtcttc 698
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccattgagagg 449
|| ||||| || || ||||| |||||| | |||||||| || || || || |||||||||
Sbjct: 699 tctagccgtggtcgtctctatgagtactctaacaacagtgtaaaagggactattgagagg 758
Query: 450 tacaagaaggcaa 462
|||||||||||||
Sbjct: 759 tacaagaaggcaa 771
>gb|M55550.1|ATHAGL1A Arabidopsis thaliana transcription factor (AGL1), complete cds
Length = 895
Score = 65.9 bits (33), Expect = 2e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 385 tcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccattg 444
||||||||| || ||||| ||||| ||||||||||||||||| |||| ||| || ||||
Sbjct: 191 tcttctccactcgtggccgtctctatgagtacgccaacaacagtgtgaggggtacaattg 250
Query: 445 agaggtacaagaa 457
| |||||||||||
Sbjct: 251 aaaggtacaagaa 263
>gb|AY086196.1| Arabidopsis thaliana clone 22339 mRNA, complete sequence
Length = 1202
Score = 65.9 bits (33), Expect = 2e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 385 tcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccattg 444
||||||||| || ||||| ||||| ||||||||||||||||| |||| ||| || ||||
Sbjct: 506 tcttctccactcgtggccgtctctatgagtacgccaacaacagtgtgaggggtacaattg 565
Query: 445 agaggtacaagaa 457
| |||||||||||
Sbjct: 566 aaaggtacaagaa 578
>ref|NM_115740.2| Arabidopsis thaliana SHP1 (SHATTERPROOF 1); DNA binding /
transcription factor AT3G58780 (SHP1) mRNA, complete cds
Length = 1209
Score = 65.9 bits (33), Expect = 2e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 385 tcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccattg 444
||||||||| || ||||| ||||| ||||||||||||||||| |||| ||| || ||||
Sbjct: 506 tcttctccactcgtggccgtctctatgagtacgccaacaacagtgtgaggggtacaattg 565
Query: 445 agaggtacaagaa 457
| |||||||||||
Sbjct: 566 aaaggtacaagaa 578
>gb|DR751298.1|DR751298 13-L022242-065-008-E02-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 008-E02, mRNA sequence
Length = 779
Score = 60.0 bits (30), Expect = 1e-006
Identities = 126/158 (79%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 201 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 260
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 261 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 320
Query: 420 aacaacagcgtgaagggcaccattgagaggtacaagaa 457
|||||||| |||| || || || || |||||||||||
Sbjct: 321 aacaacagtgtgagaggaacaatagaaaggtacaagaa 358
>gb|DR751299.1|DR751299 13-L022243-065-008-E02-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 008-E02, mRNA sequence
Length = 834
Score = 60.0 bits (30), Expect = 1e-006
Identities = 126/158 (79%)
Strand = Plus / Minus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 755 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 696
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 695 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 636
Query: 420 aacaacagcgtgaagggcaccattgagaggtacaagaa 457
|||||||| |||| || || || || |||||||||||
Sbjct: 635 aacaacagtgtgagaggaacaatagaaaggtacaagaa 598
>gb|M55553.1|ATHAGL5A Arabidopsis thaliana transcription factor (AGL5) mRNA, complete cds
Length = 963
Score = 60.0 bits (30), Expect = 1e-006
Identities = 126/158 (79%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 177 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 236
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 237 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 296
Query: 420 aacaacagcgtgaagggcaccattgagaggtacaagaa 457
|||||||| |||| || || || || |||||||||||
Sbjct: 297 aacaacagtgtgagaggaacaatagaaaggtacaagaa 334
>emb|AX380953.1| Sequence 7 from Patent WO0210415
Length = 5497
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || || || || || || ||||| ||||||||||||
Sbjct: 2200 ctcaagaaagcttacgagctctctgttctttgtgatgctgaagtcgcactcatcgtcttc 2259
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacag 427
|| ||||| || || ||||| |||||| | ||||||||
Sbjct: 2260 tctagccgtggtcgtctctatgagtactctaacaacag 2297
Score = 44.1 bits (22), Expect = 0.063
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 441 attgagaggtacaagaaggcaa 462
||||||||||||||||||||||
Sbjct: 5310 attgagaggtacaagaaggcaa 5331
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || || || || || || ||||| ||||||||||||
Sbjct: 6296805 ctcaagaaagcttacgagctctctgttctttgtgatgctgaagtcgcactcatcgtcttc 6296864
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacag 427
|| ||||| || || ||||| |||||| | ||||||||
Sbjct: 6296865 tctagccgtggtcgtctctatgagtactctaacaacag 6296902
Score = 44.1 bits (22), Expect = 0.063
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 441 attgagaggtacaagaaggcaa 462
||||||||||||||||||||||
Sbjct: 6299915 attgagaggtacaagaaggcaa 6299936
>emb|AL021711.2|ATF13C5 Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project)
Length = 119111
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || || || || || || ||||| ||||||||||||
Sbjct: 48818 ctcaagaaagcttacgagctctctgttctttgtgatgctgaagtcgcactcatcgtcttc 48877
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacag 427
|| ||||| || || ||||| |||||| | ||||||||
Sbjct: 48878 tctagccgtggtcgtctctatgagtactctaacaacag 48915
Score = 44.1 bits (22), Expect = 0.063
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 441 attgagaggtacaagaaggcaa 462
||||||||||||||||||||||
Sbjct: 51928 attgagaggtacaagaaggcaa 51949
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
Length = 199075
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || || || || || || ||||| ||||||||||||
Sbjct: 162188 ctcaagaaagcttacgagctctctgttctttgtgatgctgaagtcgcactcatcgtcttc 162247
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacag 427
|| ||||| || || ||||| |||||| | ||||||||
Sbjct: 162248 tctagccgtggtcgtctctatgagtactctaacaacag 162285
Score = 44.1 bits (22), Expect = 0.063
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 441 attgagaggtacaagaaggcaa 462
||||||||||||||||||||||
Sbjct: 165298 attgagaggtacaagaaggcaa 165319
>ref|NM_180046.1| Arabidopsis thaliana SHP2 (SHATTERPROOF 2); transcription factor
AT2G42830 (SHP2) transcript variant AT2G42830.2 mRNA,
complete cds
Length = 1030
Score = 60.0 bits (30), Expect = 1e-006
Identities = 126/158 (79%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 176 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 235
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 236 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 295
Query: 420 aacaacagcgtgaagggcaccattgagaggtacaagaa 457
|||||||| |||| || || || || |||||||||||
Sbjct: 296 aacaacagtgtgagaggaacaatagaaaggtacaagaa 333
>ref|NM_129844.3| Arabidopsis thaliana SHP2 (SHATTERPROOF 2); transcription factor
AT2G42830 (SHP2) transcript variant AT2G42830.1 mRNA,
complete cds
Length = 1025
Score = 60.0 bits (30), Expect = 1e-006
Identities = 126/158 (79%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 177 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 236
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 237 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 296
Query: 420 aacaacagcgtgaagggcaccattgagaggtacaagaa 457
|||||||| |||| || || || || |||||||||||
Sbjct: 297 aacaacagtgtgagaggaacaatagaaaggtacaagaa 334
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||| || ||||||||||| || || || || || || ||||| ||||||||||||
Sbjct: 10384060 ctcaagaaagcttacgagctctctgttctttgtgatgctgaagtcgcactcatcgtcttc 10384119
Query: 390 tccagccgcggccgcctctacgagtacgccaacaacag 427
|| ||||| || || ||||| |||||| | ||||||||
Sbjct: 10384120 tctagccgtggtcgtctctatgagtactctaacaacag 10384157
Score = 44.1 bits (22), Expect = 0.063
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 441 attgagaggtacaagaaggcaa 462
||||||||||||||||||||||
Sbjct: 10387170 attgagaggtacaagaaggcaa 10387191
>gb|BZ663057.1|BZ663057 SALK_026551.47.05.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_026551.47.05.x,
DNA sequence
Length = 426
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 114 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 157
>gb|BE038223.1|BE038223 AA10E11 AA Arabidopsis thaliana cDNA 5' similar to mads-box
protein, mRNA sequence
Length = 704
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 241 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 284
>gb|DR750275.1|DR750275 65-L020098-065-001-A09-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 001-A09, mRNA sequence
Length = 953
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 194 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 237
>gb|DR750276.1|DR750276 65-L020099-065-001-A09-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 001-A09, mRNA sequence
Length = 920
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 648 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 605
>gb|AF211171.1|AF211171 Arabidopsis thaliana short vegetative phase protein (SVP) mRNA,
complete cds
Length = 1518
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 632 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 675
>emb|AX052687.1| Sequence 1 from Patent WO0070053
Length = 1771
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 514 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 557
>emb|AX052689.1| Sequence 3 from Patent WO0070053
Length = 1368
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 521 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 564
>emb|AX052691.1| Sequence 5 from Patent WO0070053
Length = 2134
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 103 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 146
>emb|AX052692.1| Sequence 6 from Patent WO0070053
Length = 3184
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 103 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 146
>emb|AX052693.1| Sequence 7 from Patent WO0070053
Length = 10617
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 4862 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 4905
>emb|AX320930.1| Sequence 6 from Patent WO0179517
Length = 6138
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 2800 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 2859
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 2860 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 2919
Query: 420 aacaacag 427
||||||||
Sbjct: 2920 aacaacag 2927
>emb|AX506507.1| Sequence 1202 from Patent WO0216655
Length = 633
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 103 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 146
>gb|AC006592.6| Arabidopsis thaliana chromosome 2 clone F14M13 map mi238, complete
sequence
Length = 106949
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 13767 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 13724
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete
sequence
Length = 115310
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 61045 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 60986
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 60985 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 60926
Query: 420 aacaacag 427
||||||||
Sbjct: 60925 aacaacag 60918
>emb|BX842431.1|CNS0A8GM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS10ZE07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1390
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 616 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 659
>emb|BX842440.1|CNS0A8OH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH56ZH06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1341
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 505 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 548
>emb|BX842447.1|CNS0A8UX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB15ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1460
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 264 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 307
>emb|BX842456.1|CNS0A915 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH84ZA03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1363
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 348 ctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctc 391
|||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct: 532 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 575
>gb|AY727646.1| Arabidopsis thaliana ecotype Ler-0 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4829
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727647.1| Arabidopsis thaliana ecotype Wassilewskija SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4749
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727648.1| Arabidopsis thaliana ecotype Co-1 SHATTERPROOF2 (SHP2) gene, complete
cds
Length = 4815
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727649.1| Arabidopsis thaliana ecotype Es-0 SHATTERPROOF2 (SHP2) gene, complete
cds
Length = 4781
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727650.1| Arabidopsis thaliana ecotype Ita-0 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4820
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1603 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1662
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1663 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1722
Query: 420 aacaacag 427
||||||||
Sbjct: 1723 aacaacag 1730
>gb|AY727651.1| Arabidopsis thaliana ecotype Kas-1 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4819
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727652.1| Arabidopsis thaliana ecotype Li-3 SHATTERPROOF2 (SHP2) gene, complete
cds
Length = 4805
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727653.1| Arabidopsis thaliana ecotype Lu-1 SHATTERPROOF2 (SHP2) gene, complete
cds
Length = 4832
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1603 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1662
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1663 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1722
Query: 420 aacaacag 427
||||||||
Sbjct: 1723 aacaacag 1730
>gb|AY727654.1| Arabidopsis thaliana ecotype Mt-0 SHATTERPROOF2 (SHP2) gene, complete
cds
Length = 4807
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727655.1| Arabidopsis thaliana ecotype PLA-0 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4822
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727656.1| Arabidopsis thaliana ecotype Pog-0 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4805
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727657.1| Arabidopsis thaliana ecotype Tsu-1 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4749
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727658.1| Arabidopsis thaliana ecotype PHW-1 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4803
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727659.1| Arabidopsis thaliana ecotype PHW-33 SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4803
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
>gb|AY727660.1| Arabidopsis thaliana ecotype Kondara SHATTERPROOF2 (SHP2) gene,
complete cds
Length = 4805
Score = 56.0 bits (28), Expect = 2e-005
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 300 gtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctc 359
||||| |||||||| || ||||| || | |||||||| || || |||||||| || |
Sbjct: 1604 gtcactttctgcaaacgacgcaatggtttactcaagaaagcttatgagctctctgtcttg 1663
Query: 360 tgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgcc 419
|| ||||| ||||| || || || ||||||||| || ||||| |||||||||||||||
Sbjct: 1664 tgtgacgctgaggttgctcttgtcatcttctccactcgaggccgtctctacgagtacgcc 1723
Query: 420 aacaacag 427
||||||||
Sbjct: 1724 aacaacag 1731
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 592,536
Number of Sequences: 1013581
Number of extensions: 592536
Number of successful extensions: 40924
Number of sequences better than 0.5: 99
Number of HSP's better than 0.5 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39658
Number of HSP's gapped (non-prelim): 1266
length of query: 1354
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1333
effective length of database: 887,655,671
effective search space: 1183245009443
effective search space used: 1183245009443
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)