BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621786.2.1
(623 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV538184.1|AV538184 AV538184 Arabidopsis thaliana roots ... 64 3e-008
gb|AV541015.1|AV541015 AV541015 Arabidopsis thaliana roots ... 64 3e-008
gb|AV541470.1|AV541470 AV541470 Arabidopsis thaliana roots ... 64 3e-008
gb|AV541502.1|AV541502 AV541502 Arabidopsis thaliana roots ... 64 3e-008
gb|AV541547.1|AV541547 AV541547 Arabidopsis thaliana roots ... 64 3e-008
gb|AV542269.1|AV542269 AV542269 Arabidopsis thaliana roots ... 64 3e-008
gb|AF195140.1|AF195140 Arabidopsis thaliana GDP-D-mannose 4... 64 3e-008
emb|BX831556.1|CNS09ZNE Arabidopsis thaliana Full-length cD... 64 3e-008
emb|BX832006.1|CNS09ZP0 Arabidopsis thaliana Full-length cD... 64 3e-008
emb|BX832008.1|CNS09ZPL Arabidopsis thaliana Full-length cD... 64 3e-008
emb|BX830536.1|CNS0A02S Arabidopsis thaliana Full-length cD... 64 3e-008
dbj|AB022211.1| Arabidopsis thaliana genomic DNA, chromosom... 64 3e-008
dbj|AK117276.1| Arabidopsis thaliana mRNA for unknown prote... 64 3e-008
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 64 3e-008
ref|NM_126026.2| Arabidopsis thaliana GMD1 (GDP-D-MANNOSE 4... 64 3e-008
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 64 3e-008
gb|T21465.1|T21465 3473 Lambda-PRL2 Arabidopsis thaliana cD... 58 2e-006
gb|CC455911.1|CC455911 SALK_089952.22.25.x Arabidopsis thal... 56 7e-006
gb|AV544946.1|AV544946 AV544946 Arabidopsis thaliana roots ... 54 3e-005
>gb|AV538184.1|AV538184 AV538184 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ111b06F 3', mRNA sequence
Length = 578
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 480 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 425
>gb|AV541015.1|AV541015 AV541015 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ158h01F 3', mRNA sequence
Length = 594
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 505 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 450
>gb|AV541470.1|AV541470 AV541470 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ167b06F 3', mRNA sequence
Length = 550
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 532 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 477
>gb|AV541502.1|AV541502 AV541502 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ167f08F 3', mRNA sequence
Length = 556
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 554 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 499
>gb|AV541547.1|AV541547 AV541547 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ168c10F 3', mRNA sequence
Length = 584
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 549 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 494
>gb|AV542269.1|AV542269 AV542269 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ181d06F 3', mRNA sequence
Length = 630
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 552 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 497
>gb|AF195140.1|AF195140 Arabidopsis thaliana GDP-D-mannose 4,6-dehydratase (GMD1) mRNA,
complete cds
Length = 1324
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 780 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 835
>emb|BX831556.1|CNS09ZNE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH15ZC03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1295
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 783 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 838
>emb|BX832006.1|CNS09ZP0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH45ZF07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1312
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 779 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 834
>emb|BX832008.1|CNS09ZPL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH45ZG07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1311
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 779 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 834
>emb|BX830536.1|CNS0A02S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB89ZF04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1336
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 741 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 796
>dbj|AB022211.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1L20
Length = 47665
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 13738 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 13793
>dbj|AK117276.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone:
RAFL16-83-C18
Length = 2271
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 1265 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 1210
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 23395230 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 23395285
>ref|NM_126026.2| Arabidopsis thaliana GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1);
GDP-mannose 4,6-dehydratase/ NAD binding / catalytic
AT5G66280 (GMD1) mRNA, complete cds
Length = 1953
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 992 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 1047
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 26494383 gactggggtttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 26494438
>gb|T21465.1|T21465 3473 Lambda-PRL2 Arabidopsis thaliana cDNA clone 90A12T7, mRNA
sequence
Length = 286
Score = 58.0 bits (29), Expect = 2e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagg 68
|||| ||| ||||| || |||||||| || ||||||||||| |||||||||||||
Sbjct: 155 gactngggtttcgcaggagactacgtggaagcaatgtggctnatgctgcagcagg 209
>gb|CC455911.1|CC455911 SALK_089952.22.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_089952.22.25.x,
DNA sequence
Length = 324
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 14 gactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
|||||||| ||||| || |||||||| || || |||||||| ||||||||||||||
Sbjct: 229 gactggggtttcgcaggagactacgtggaagctatgtggctgatgctgcagcagga 284
>gb|AV544946.1|AV544946 AV544946 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ64h07F 3', mRNA sequence
Length = 485
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 23 ttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcagga 69
||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 482 ttcgcaggagactacgtggaagcaatgtggctgatgctgcagcagga 436
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 254,589
Number of Sequences: 1013581
Number of extensions: 254589
Number of successful extensions: 18926
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18773
Number of HSP's gapped (non-prelim): 153
length of query: 623
length of database: 908,940,872
effective HSP length: 20
effective length of query: 603
effective length of database: 888,669,252
effective search space: 535867558956
effective search space used: 535867558956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)