BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH613854.1|BH613854 SALK_035073 Arabidopsis thaliana TDN... 44 0.029
gb|CL482676.1|CL482676 SAIL_364_D06.v1 SAIL Collection Arab... 44 0.029
gb|AA404947.1|AA404947 28331 Lambda-PRL2 Arabidopsis thalia... 44 0.029
gb|AV805171.1|AV805171 AV805171 RAFL9 Arabidopsis thaliana ... 44 0.029
gb|AV567049.1|AV567049 AV567049 Arabidopsis thaliana green ... 44 0.029
gb|AY099543.1| Arabidopsis thaliana putative protein (At5g4... 44 0.029
emb|BX833760.1|CNS0A1OW Arabidopsis thaliana Full-length cD... 44 0.029
dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.029
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.029
ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNT... 44 0.029
ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G4... 44 0.029
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.029
>gb|BH613854.1|BH613854 SALK_035073 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_035073, DNA sequence
Length = 340
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 224 cacacacacaaacaaacagagt 245
>gb|CL482676.1|CL482676 SAIL_364_D06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_364_D06.v1, DNA sequence
Length = 913
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 302 cacacacacaaacaaacagagt 323
>gb|AA404947.1|AA404947 28331 Lambda-PRL2 Arabidopsis thaliana cDNA clone 148H10XP 3', mRNA
sequence
Length = 540
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 415 cacacacacaaacaaacagagt 394
>gb|AV805171.1|AV805171 AV805171 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-41-P09 3',
mRNA sequence
Length = 426
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 133 cacacacacaaacaaacagagt 154
>gb|AV567049.1|AV567049 AV567049 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL05f04F 3', mRNA sequence
Length = 375
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 105 cacacacacaaacaaacagagt 126
>gb|AY099543.1| Arabidopsis thaliana putative protein (At5g44040) mRNA, complete cds
Length = 1628
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 1498 cacacacacaaacaaacagagt 1477
>emb|BX833760.1|CNS0A1OW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL75ZF03 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1633
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 1527 cacacacacaaacaaacagagt 1506
>dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRH10
Length = 71522
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 49892 cacacacacaaacaaacagagt 49913
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 16112519 cacacacacaaacaaacagagt 16112540
>ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNTHASE 4); transferase,
transferring glycosyl groups AT5G44030 (CESA4) mRNA,
complete cds
Length = 3745
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 3452 cacacacacaaacaaacagagt 3473
>ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G44040 mRNA, complete cds
Length = 2278
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 1515 cacacacacaaacaaacagagt 1494
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 cacacacacaaacaaacagagt 180
||||||||||||||||||||||
Sbjct: 17737025 cacacacacaaacaaacagagt 17737046
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,171
Number of Sequences: 1013581
Number of extensions: 187171
Number of successful extensions: 14747
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14592
Number of HSP's gapped (non-prelim): 155
length of query: 636
length of database: 908,940,872
effective HSP length: 20
effective length of query: 616
effective length of database: 888,669,252
effective search space: 547420259232
effective search space used: 547420259232
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)