BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2594405.2.1
         (637 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AE005172.1|  Arabidopsis thaliana chromosome 1, top arm c...    46   0.007
gb|AC004122.1|  Arabidopsis thaliana chromosome I BAC T27I1 ...    46   0.007
ref|NM_100879.2|  Arabidopsis thaliana hydrolase, hydrolyzin...    46   0.007
ref|NC_003070.5|  Arabidopsis thaliana chromosome 1, complet...    46   0.007
gb|AV540933.1|AV540933  AV540933 Arabidopsis thaliana roots ...    42   0.11 

>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
          Length = 14221815

 Score = 46.1 bits (23), Expect = 0.007
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                           
Query: 391     cataaacatctcccagaatccccagaggatgattccccccacagcaggatgtgcaaatgc 450
               |||||||| ||||||||||||||| || || | |||  | || || ||||| ||||| ||
Sbjct: 3283020 cataaacagctcccagaatccccaaagcatcactccttcaactgccggatgagcaaaggc 3282961

                                          
Query: 451     ttcccggaggaacacctctagatcatc 477
               |||||  || | |||||||||||||||
Sbjct: 3282960 ttcccatagcatcacctctagatcatc 3282934



>gb|AC004122.1| Arabidopsis thaliana chromosome I BAC T27I1 genomic sequence, complete
             sequence
          Length = 67878

 Score = 46.1 bits (23), Expect = 0.007
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                         
Query: 391   cataaacatctcccagaatccccagaggatgattccccccacagcaggatgtgcaaatgc 450
             |||||||| ||||||||||||||| || || | |||  | || || ||||| ||||| ||
Sbjct: 28512 cataaacagctcccagaatccccaaagcatcactccttcaactgccggatgagcaaaggc 28453

                                        
Query: 451   ttcccggaggaacacctctagatcatc 477
             |||||  || | |||||||||||||||
Sbjct: 28452 ttcccatagcatcacctctagatcatc 28426



>ref|NM_100879.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
            AT1G10050 mRNA, complete cds
          Length = 3230

 Score = 46.1 bits (23), Expect = 0.007
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                        
Query: 391  cataaacatctcccagaatccccagaggatgattccccccacagcaggatgtgcaaatgc 450
            |||||||| ||||||||||||||| || || | |||  | || || ||||| ||||| ||
Sbjct: 2946 cataaacagctcccagaatccccaaagcatcactccttcaactgccggatgagcaaaggc 2887

                                       
Query: 451  ttcccggaggaacacctctagatcatc 477
            |||||  || | |||||||||||||||
Sbjct: 2886 ttcccatagcatcacctctagatcatc 2860



>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
          Length = 30432563

 Score = 46.1 bits (23), Expect = 0.007
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                           
Query: 391     cataaacatctcccagaatccccagaggatgattccccccacagcaggatgtgcaaatgc 450
               |||||||| ||||||||||||||| || || | |||  | || || ||||| ||||| ||
Sbjct: 3283200 cataaacagctcccagaatccccaaagcatcactccttcaactgccggatgagcaaaggc 3283141

                                          
Query: 451     ttcccggaggaacacctctagatcatc 477
               |||||  || | |||||||||||||||
Sbjct: 3283140 ttcccatagcatcacctctagatcatc 3283114



>gb|AV540933.1|AV540933 AV540933 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
           cDNA clone RZ157e02F 3', mRNA sequence
          Length = 400

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 84/105 (80%)
 Strand = Plus / Plus

                                                                       
Query: 391 cataaacatctcccagaatccccagaggatgattccccccacagcaggatgtgcaaatgc 450
           |||||||| ||||||||||||||| || || | |||  | || || ||||| ||||| ||
Sbjct: 285 cataaacagctcccagaatccccaaagcatcactccttcaactgccggatgagcaaaggc 344

                                                        
Query: 451 ttcccggaggaacacctctagatcatcagctcgtatgtgctcgtt 495
           || ||  || | |||||||||||||||  ||| ||| ||||||||
Sbjct: 345 tttccatagcatcacctctagatcatcccctcttatatgctcgtt 389



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 233,017
Number of Sequences: 1013581
Number of extensions: 233017
Number of successful extensions: 14318
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14150
Number of HSP's gapped (non-prelim): 164
length of query: 637
length of database: 908,940,872
effective HSP length: 20
effective length of query: 617
effective length of database: 888,669,252
effective search space: 548308928484
effective search space used: 548308928484
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)