BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591248.2.1
         (1222 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DQ056459.1|  Arabidopsis thaliana glycosyl hydrolase fami...    44   0.056
ref|NM_102170.1|  Arabidopsis thaliana hydrolase, hydrolyzin...    44   0.056
gb|CL505665.1|CL505665  SAIL_754_A11.v2 SAIL Collection Arab...    42   0.22 

>gb|DQ056459.1| Arabidopsis thaliana glycosyl hydrolase family 9 protein (At1g23210)
            mRNA, complete cds
          Length = 1470

 Score = 44.1 bits (22), Expect = 0.056
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 606  agtatgtagtccacctgccgcttggc 631
            ||||||||||||||||| ||||||||
Sbjct: 1160 agtatgtagtccacctgacgcttggc 1135



>ref|NM_102170.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
            AT1G23210 mRNA, complete cds
          Length = 1470

 Score = 44.1 bits (22), Expect = 0.056
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 606  agtatgtagtccacctgccgcttggc 631
            ||||||||||||||||| ||||||||
Sbjct: 1160 agtatgtagtccacctgacgcttggc 1135



>gb|CL505665.1|CL505665 SAIL_754_A11.v2 SAIL Collection Arabidopsis thaliana genomic clone
            SAIL_754_A11.v2, DNA sequence
          Length = 1771

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 672  cacgagacgcgcccgccggcg 692
            |||||||||||||||||||||
Sbjct: 1586 cacgagacgcgcccgccggcg 1606



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 293,063
Number of Sequences: 1013581
Number of extensions: 293063
Number of successful extensions: 20717
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20711
Number of HSP's gapped (non-prelim): 6
length of query: 1222
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1202
effective length of database: 888,669,252
effective search space: 1068180440904
effective search space used: 1068180440904
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)