BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2590996.2.1
(1086 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV521048.1|AV521048 AV521048 Arabidopsis thaliana aboveg... 44 0.050
gb|U81293.1|ATU81293 Arabidopsis thaliana UDP-glucose:indol... 44 0.050
gb|AY058838.1| Arabidopsis thaliana AT4g15550/dl3815c mRNA,... 44 0.050
emb|AX412877.1| Sequence 641 from Patent WO0222675 44 0.050
gb|AY103297.1| Arabidopsis thaliana AT4g15550/dl3815c mRNA,... 44 0.050
emb|AX507419.1| Sequence 2114 from Patent WO0216655 44 0.050
emb|AX651707.1| Sequence 537 from Patent WO03000898 44 0.050
emb|BX827642.1|CNS0A2HT Arabidopsis thaliana Full-length cD... 44 0.050
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.050
emb|CQ974291.1| Sequence 45 from Patent WO2004113540 44 0.050
emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosom... 44 0.050
emb|AL161542.2|ATCHRIV42 Arabidopsis thaliana DNA chromosom... 44 0.050
emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ... 44 0.050
ref|NM_117646.2| Arabidopsis thaliana IAGLU (INDOLE-3-ACETA... 44 0.050
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.050
>gb|AV521048.1|AV521048 AV521048 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ42c08F 3', mRNA
sequence
Length = 410
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 278 ctctccagcgtagagttccacccgcaatgcgtca 311
>gb|U81293.1|ATU81293 Arabidopsis thaliana UDP-glucose:indole-3-acetate
beta-D-glucosyltransferase (iaglu) mRNA, complete cds
Length = 1589
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1152 ctctccagcgtagagttccacccgcaatgcgtca 1119
>gb|AY058838.1| Arabidopsis thaliana AT4g15550/dl3815c mRNA, partial cds
Length = 1404
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1002 ctctccagcgtagagttccacccgcaatgcgtca 969
>emb|AX412877.1| Sequence 641 from Patent WO0222675
Length = 1377
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1079 ctctccagcgtagagttccacccgcaatgcgtca 1046
>gb|AY103297.1| Arabidopsis thaliana AT4g15550/dl3815c mRNA, complete cds
Length = 1257
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 959 ctctccagcgtagagttccacccgcaatgcgtca 926
>emb|AX507419.1| Sequence 2114 from Patent WO0216655
Length = 1377
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1079 ctctccagcgtagagttccacccgcaatgcgtca 1046
>emb|AX651707.1| Sequence 537 from Patent WO03000898
Length = 1377
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1079 ctctccagcgtagagttccacccgcaatgcgtca 1046
>emb|BX827642.1|CNS0A2HT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS89ZD07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1561
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1142 ctctccagcgtagagttccacccgcaatgcgtca 1109
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 4790916 ctctccagcgtagagttccacccgcaatgcgtca 4790949
>emb|CQ974291.1| Sequence 45 from Patent WO2004113540
Length = 1425
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1127 ctctccagcgtagagttccacccgcaatgcgtca 1094
>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41
Length = 197419
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 196293 ctctccagcgtagagttccacccgcaatgcgtca 196326
>emb|AL161542.2|ATCHRIV42 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 42
Length = 195068
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 3874 ctctccagcgtagagttccacccgcaatgcgtca 3907
>emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 4
Length = 205065
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 46820 ctctccagcgtagagttccacccgcaatgcgtca 46853
>ref|NM_117646.2| Arabidopsis thaliana IAGLU (INDOLE-3-ACETATE
BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/
transferase, transferring glycosyl groups AT4G15550
(IAGLU) mRNA, complete cds
Length = 1840
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 1153 ctctccagcgtagagttccacccgcaatgcgtca 1120
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.050
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 529 ctctccagcgtggagttccacccggagtgcgtca 562
||||||||||| |||||||||||| | |||||||
Sbjct: 8878173 ctctccagcgtagagttccacccgcaatgcgtca 8878206
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 281,726
Number of Sequences: 1013581
Number of extensions: 281726
Number of successful extensions: 18415
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18215
Number of HSP's gapped (non-prelim): 200
length of query: 1086
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1066
effective length of database: 888,669,252
effective search space: 947321422632
effective search space used: 947321422632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)