BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521686.2.1
(2104 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI999053.1|AI999053 701516913 A. thaliana, Columbia Col-... 48 0.006
gb|AV803275.1|AV803275 AV803275 RAFL9 Arabidopsis thaliana ... 48 0.006
gb|AV814998.1|AV814998 AV814998 RAFL9 Arabidopsis thaliana ... 48 0.006
gb|AV815944.1|AV815944 AV815944 RAFL9 Arabidopsis thaliana ... 48 0.006
gb|BP570518.1|BP570518 BP570518 RAFL14 Arabidopsis thaliana... 48 0.006
gb|BP601190.1|BP601190 BP601190 RAFL16 Arabidopsis thaliana... 48 0.006
gb|BP663492.1|BP663492 BP663492 RAFL21 Arabidopsis thaliana... 48 0.006
gb|BP785204.1|BP785204 BP785204 RAFL7 Arabidopsis thaliana ... 48 0.006
gb|L05561.1|ATHPROKINA Arabidopsis thaliana protein kinase ... 48 0.006
gb|AY057591.1| Arabidopsis thaliana AT3g50500/T20E23_100 mR... 48 0.006
gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BA... 48 0.006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 48 0.006
emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome... 48 0.006
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 48 0.006
ref|NM_106071.1| Arabidopsis thaliana CYP78A10; heme bindin... 48 0.006
ref|NM_114910.2| Arabidopsis thaliana SPK-2-2; ATP binding ... 48 0.006
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 48 0.006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.006
gb|AV814750.1|AV814750 AV814750 RAFL9 Arabidopsis thaliana ... 44 0.098
emb|AL824001.1| Arabidopsis thaliana transposon insertion S... 44 0.098
emb|AL824012.1| Arabidopsis thaliana transposon insertion S... 44 0.098
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.098
emb|AL021811.1|ATF10M6 Arabidopsis thaliana DNA chromosome ... 44 0.098
emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosom... 44 0.098
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.098
gb|AY785534.1| Arabidopsis thaliana At4g32280 gene, promote... 44 0.098
>gb|AI999053.1|AI999053 701516913 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701516913, mRNA sequence
Length = 347
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 26 acattacaatacatatatatgtat 49
>gb|AV803275.1|AV803275 AV803275 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-34-O19 3',
mRNA sequence
Length = 412
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 56 acattacaatacatatatatgtat 79
>gb|AV814998.1|AV814998 AV814998 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-85-A11 3',
mRNA sequence
Length = 389
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 37 acattacaatacatatatatgtat 60
>gb|AV815944.1|AV815944 AV815944 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-88-K16 3',
mRNA sequence
Length = 386
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 56 acattacaatacatatatatgtat 79
>gb|BP570518.1|BP570518 BP570518 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-72-N17 3',
mRNA sequence
Length = 474
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 56 acattacaatacatatatatgtat 79
>gb|BP601190.1|BP601190 BP601190 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-B19 3',
mRNA sequence
Length = 418
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 75 acattacaatacatatatatgtat 98
>gb|BP663492.1|BP663492 BP663492 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-48-F02 3',
mRNA sequence
Length = 350
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 77 acattacaatacatatatatgtat 100
>gb|BP785204.1|BP785204 BP785204 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-93-O08 3',
mRNA sequence
Length = 433
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 61 acattacaatacatatatatgtat 84
>gb|L05561.1|ATHPROKINA Arabidopsis thaliana protein kinase mRNA, complete cds
Length = 1448
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 1389 acattacaatacatatatatgtat 1366
>gb|AY057591.1| Arabidopsis thaliana AT3g50500/T20E23_100 mRNA, complete cds
Length = 1474
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 1415 acattacaatacatatatatgtat 1392
>gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete
sequence
Length = 108387
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 711 catcgtgggttatggcccacatattcaccatcgccgtggt 750
||||||||||||| |||||||| || |||||||| |||||
Sbjct: 6221 catcgtgggttatagcccacatgttaaccatcgcagtggt 6182
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 18705103 acattacaatacatatatatgtat 18705126
>emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23
Length = 83513
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 31606 acattacaatacatatatatgtat 31629
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 711 catcgtgggttatggcccacatattcaccatcgccgtggt 750
||||||||||||| |||||||| || |||||||| |||||
Sbjct: 12108276 catcgtgggttatagcccacatgttaaccatcgcagtggt 12108315
>ref|NM_106071.1| Arabidopsis thaliana CYP78A10; heme binding / iron ion binding /
monooxygenase/ oxygen binding AT1G74110 (CYP78A10) mRNA,
complete cds
Length = 1614
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 711 catcgtgggttatggcccacatattcaccatcgccgtggt 750
||||||||||||| |||||||| || |||||||| |||||
Sbjct: 1324 catcgtgggttatagcccacatgttaaccatcgcagtggt 1285
>ref|NM_114910.2| Arabidopsis thaliana SPK-2-2; ATP binding / kinase/ protein kinase/
protein serine/threonine kinase/ protein-tyrosine kinase
AT3G50500 (SPK-2-2) mRNA, complete cds
Length = 1473
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 1414 acattacaatacatatatatgtat 1391
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acattacaatacatatatatgtat 67
||||||||||||||||||||||||
Sbjct: 18752630 acattacaatacatatatatgtat 18752653
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 711 catcgtgggttatggcccacatattcaccatcgccgtggt 750
||||||||||||| |||||||| || |||||||| |||||
Sbjct: 27870618 catcgtgggttatagcccacatgttaaccatcgcagtggt 27870657
>gb|AV814750.1|AV814750 AV814750 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-84-B22 3',
mRNA sequence
Length = 407
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 attacaatacatatatatgtat 67
||||||||||||||||||||||
Sbjct: 38 attacaatacatatatatgtat 59
>emb|AL824001.1| Arabidopsis thaliana transposon insertion STS SM_3.15381,
sequence tagged site
Length = 283
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atacatatatatgtatataata 73
||||||||||||||||||||||
Sbjct: 29 atacatatatatgtatataata 50
>emb|AL824012.1| Arabidopsis thaliana transposon insertion STS SM_3.15382,
sequence tagged site
Length = 279
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atacatatatatgtatataata 73
||||||||||||||||||||||
Sbjct: 29 atacatatatatgtatataata 50
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 52 atacatatatatgtatataata 73
||||||||||||||||||||||
Sbjct: 11496079 atacatatatatgtatataata 11496058
>emb|AL021811.1|ATF10M6 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M6 (ESSAII project)
Length = 93353
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 atacatatatatgtatataata 73
||||||||||||||||||||||
Sbjct: 42358 atacatatatatgtatataata 42379
>emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76
Length = 165698
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 52 atacatatatatgtatataata 73
||||||||||||||||||||||
Sbjct: 158005 atacatatatatgtatataata 157984
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 52 atacatatatatgtatataata 73
||||||||||||||||||||||
Sbjct: 15583306 atacatatatatgtatataata 15583285
>gb|AY785534.1| Arabidopsis thaliana At4g32280 gene, promoter region
Length = 2500
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 52 atacatatatatgtatataata 73
||||||||||||||||||||||
Sbjct: 2322 atacatatatatgtatataata 2301
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 553,722
Number of Sequences: 1013581
Number of extensions: 553722
Number of successful extensions: 46640
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45260
Number of HSP's gapped (non-prelim): 1380
length of query: 2104
length of database: 908,940,872
effective HSP length: 21
effective length of query: 2083
effective length of database: 887,655,671
effective search space: 1848986762693
effective search space used: 1848986762693
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)