BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521589.2.1
(1689 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U71081.1|ATU71081 Arabidopsis thaliana cinnamate-4-hydro... 101 4e-019
gb|U37235.1|ATU37235 Arabidopsis thaliana cinnamate 4-hydro... 101 4e-019
emb|A74281.1| Sequence 3 from Patent WO9401564 101 4e-019
gb|AY065145.1| Arabidopsis thaliana cinnamate-4-hydroxylase... 101 4e-019
gb|BT008875.1| Arabidopsis thaliana At2g30490 mRNA, complet... 101 4e-019
emb|BX819707.1|CNS0AA1Q Arabidopsis thaliana Full-length cD... 101 4e-019
dbj|D78596.1| Arabidopsis thaliana mRNA for trans-cinnamate... 101 4e-019
ref|NM_128601.2| Arabidopsis thaliana ATC4H (CINNAMATE-4-HY... 101 4e-019
emb|BX820902.1|CNS0A9NW Arabidopsis thaliana Full-length cD... 94 9e-017
gb|BU635358.1|BU635358 021A05 Infected Arabidopsis Leaf Ara... 86 2e-014
gb|U71080.1|ATU71080 Arabidopsis thaliana cinnamate-4-hydro... 62 3e-007
gb|BX836455.1|BX836455 BX836455 Arabidopsis thaliana Siliqu... 60 1e-006
gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 ge... 60 1e-006
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 60 1e-006
gb|AV823990.1|AV823990 AV823990 RAFL6 Arabidopsis thaliana ... 58 5e-006
gb|CF652756.1|CF652756 74-L020579-066-004-D19-SP6P MPIZ-ADI... 58 5e-006
gb|AV542275.1|AV542275 AV542275 Arabidopsis thaliana roots ... 58 5e-006
gb|AV559178.1|AV559178 AV559178 Arabidopsis thaliana green ... 58 5e-006
>gb|U71081.1|ATU71081 Arabidopsis thaliana cinnamate-4-hydroxylase (atC4H) mRNA, complete
cds
Length = 1727
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1029 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 970
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 969 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 910
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 909 gcttcaaggatgtgatcaatggc 887
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 477 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 418
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 417 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 365
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 630 tcgaacatgatacggaacatattgttatacatcatca 594
>gb|U37235.1|ATU37235 Arabidopsis thaliana cinnamate 4-hydroxylase (CYP73A5) mRNA, complete
cds
Length = 1735
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1022 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 963
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 962 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 903
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 902 gcttcaaggatgtgatcaatggc 880
Score = 61.9 bits (31), Expect = 3e-007
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 470 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 411
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||| || || || || || ||||| ||||||||||| ||||| | ||
Sbjct: 410 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtttctcgtt 351
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttgg 1425
| || || ||||| ||||| || ||||||||||| |||||||
Sbjct: 350 ctagatccaaactcaacgccttgtgtgtggagcacttccttgg 308
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 623 tcgaacatgatacggaacatattgttatacatcatca 587
>emb|A74281.1| Sequence 3 from Patent WO9401564
Length = 1735
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1022 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 963
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 962 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 903
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 902 gcttcaaggatgtgatcaatggc 880
Score = 61.9 bits (31), Expect = 3e-007
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 470 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 411
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||| || || || || || ||||| ||||||||||| ||||| | ||
Sbjct: 410 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtttctcgtt 351
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttgg 1425
| || || ||||| ||||| || ||||||||||| |||||||
Sbjct: 350 ctagatccaaactcaacgccttgtgtgtggagcacttccttgg 308
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 623 tcgaacatgatacggaacatattgttatacatcatca 587
>gb|AY065145.1| Arabidopsis thaliana cinnamate-4-hydroxylase (At2g30490; T6B20.16)
mRNA, complete cds
Length = 1794
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1061 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 1002
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 1001 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 942
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 941 gcttcaaggatgtgatcaatggc 919
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 509 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 450
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 449 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 397
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 662 tcgaacatgatacggaacatattgttatacatcatca 626
>gb|BT008875.1| Arabidopsis thaliana At2g30490 mRNA, complete cds
Length = 1518
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 974 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 915
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 914 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 855
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 854 gcttcaaggatgtgatcaatggc 832
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 422 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 363
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 362 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 310
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 575 tcgaacatgatacggaacatattgttatacatcatca 539
>emb|BX819707.1|CNS0AA1Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS19ZE10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1751
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1048 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 989
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 988 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 929
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 928 gcttcaaggatgtgatcaatggc 906
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 495 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 436
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 435 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 383
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 648 tcgaacatgatacggaacatattgttatacatcatca 612
>dbj|D78596.1| Arabidopsis thaliana mRNA for trans-cinnamate 4-hydroxylase, complete
cds
Length = 1711
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1030 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 971
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 970 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 911
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 910 gcttcaaggatgtgatcaatggc 888
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 478 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 419
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 418 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 366
>ref|NM_128601.2| Arabidopsis thaliana ATC4H (CINNAMATE-4-HYDROXYLASE) AT2G30490
(ATC4H) mRNA, complete cds
Length = 1803
Score = 101 bits (51), Expect = 4e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1061 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 1002
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 1001 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 942
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||||||| |||||
Sbjct: 941 gcttcaaggatgtgatcaatggc 919
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 509 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 450
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 449 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 397
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 662 tcgaacatgatacggaacatattgttatacatcatca 626
>emb|BX820902.1|CNS0A9NW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZF08 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1679
Score = 93.7 bits (47), Expect = 9e-017
Identities = 119/143 (83%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 1025 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 966
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|| |||||||||||||||||||| || || ||||| | |||||| || |||||| |||
Sbjct: 965 acattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgctca 906
Query: 843 gcctcgaggatgtgatccatggc 865
|| || ||||||| ||| |||||
Sbjct: 905 gcttcaaggatgttatcaatggc 883
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 473 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 414
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 413 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 361
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 626 tcgaacatgatacggaacatattgttatacatcatca 590
>gb|BU635358.1|BU635358 021A05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 706
Score = 85.7 bits (43), Expect = 2e-014
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| ||||| |||
Sbjct: 94 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgcggcg 35
Query: 783 acgttgatgttctcgacgatgta 805
|| ||||||||||||||||||||
Sbjct: 34 acattgatgttctcgacgatgta 12
>gb|U71080.1|ATU71080 Arabidopsis thaliana cinnamate-4-hydroxylase (atC4H) gene, complete
cds
Length = 5432
Score = 61.9 bits (31), Expect = 3e-007
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 3373 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 3314
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||| || || || || || ||||| ||||||||||| ||||| | ||
Sbjct: 3313 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtttctcgtt 3254
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttgg 1425
| || || ||||| ||||| || ||||||||||| |||||||
Sbjct: 3253 ctagatccaaactcaacgccttgtgtgtggagcacttccttgg 3211
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctc 839
||||| |||||||||||||||||||| || || ||||| | |||||| || |||||| |
Sbjct: 3953 gcgacattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgc 3894
Query: 840 tcggcctcgaggatgtgatccatggc 865
|| || || ||||||||||| |||||
Sbjct: 3893 tcagcttcaaggatgtgatcaatggc 3868
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctg 780
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| |||||||
Sbjct: 4230 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgctg 4173
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 3526 tcgaacatgatacggaacatattgttatacatcatca 3490
>gb|BX836455.1|BX836455 BX836455 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL29ZC07 3PRIM, mRNA sequence
Length = 1064
Score = 60.0 bits (30), Expect = 1e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctgcg 782
|||||||| ||||| || || ||||||||||| || |||| ||| ||||| ||||| |||
Sbjct: 694 tggttcactagctctgcaattccccactcgatagagcacaatgttgtctcaatcgcggcg 753
Query: 783 acgttgatgttctcgacgatgt 804
|| || |||| |||||||||||
Sbjct: 754 acattaatgtactcgacgatgt 775
>gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic sequence, complete
sequence
Length = 104861
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctc 839
||||| |||||||||||||||||||| || || ||||| | |||||| || |||||| |
Sbjct: 58694 gcgacattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgc 58635
Query: 840 tcggcctcgaggatgtgatccatggc 865
|| || || ||||||||||| |||||
Sbjct: 58634 tcagcttcaaggatgtgatcaatggc 58609
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 58114 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 58055
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 58054 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 58002
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctg 780
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| |||||||
Sbjct: 58971 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgctg 58914
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 58267 tcgaacatgatacggaacatattgttatacatcatca 58231
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 780 gcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctc 839
||||| |||||||||||||||||||| || || ||||| | |||||| || |||||| |
Sbjct: 13001759 gcgacattgatgttctcgacgatgtaaagaacattgtcctcgttgatttctcccttctgc 13001818
Query: 840 tcggcctcgaggatgtgatccatggc 865
|| || || ||||||||||| |||||
Sbjct: 13001819 tcagcttcaaggatgtgatcaatggc 13001844
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 13002339 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 13002398
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 13002399 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 13002451
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 723 tggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgctg 780
|||||||| ||||| || || ||||||||||| ||||||| ||| ||||| |||||||
Sbjct: 13001482 tggttcactagctctgcaattccccactcgatagaccacaatgttgtctcaatcgctg 13001539
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 13002186 tcgaacatgatacggaacatattgttatacatcatca 13002222
>gb|AV823990.1|AV823990 AV823990 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-11-J16 5', mRNA
sequence
Length = 661
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 506 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 447
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 446 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 394
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 659 tcgaacatgatacggaacatattgttatacatcatca 623
>gb|CF652756.1|CF652756 74-L020579-066-004-D19-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001D194Q 5-PRIME, mRNA sequence
Length = 842
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 486 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 427
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 426 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 374
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 639 tcgaacatgatacggaacatattgttatacatcatca 603
>gb|AV542275.1|AV542275 AV542275 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ181d12F 3', mRNA sequence
Length = 619
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 313 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 254
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 253 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 201
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 466 tcgaacatgatacggaacatattgttatacatcatca 430
>gb|AV559178.1|AV559178 AV559178 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ112f04F 3', mRNA sequence
Length = 604
Score = 58.0 bits (29), Expect = 5e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
|||||||||||||| || || |||||||| | | |||||| | ||| || ||||||||
Sbjct: 269 ttgttggtgaagaaaggaaccgtcatgattcttctcatcttcctccaatgctcgccgtaa 328
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgtt 1375
|| ||||||||||| || || || || || ||||| ||||||||||| |||||
Sbjct: 329 acagtgaacaccatatcttgacctttcccggtgaaaatgtcgaacacgacgtt 381
Score = 42.1 bits (21), Expect = 0.31
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1110 tcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||||||||||| |||||||| | ||| ||||||||||
Sbjct: 116 tcgaacatgatacggaacatattgttatacatcatca 152
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 520,649
Number of Sequences: 1013581
Number of extensions: 520649
Number of successful extensions: 38874
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38635
Number of HSP's gapped (non-prelim): 239
length of query: 1689
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1668
effective length of database: 887,655,671
effective search space: 1480609659228
effective search space used: 1480609659228
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)