BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485939.2.1
(530 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK119118.1|CK119118 214c05.p1 AtM1 Arabidopsis thaliana ... 50 4e-004
gb|DN604579.1|DN604579 JCAt3g01140 Arabidopsis Gateway cDNA... 50 4e-004
gb|DR750660.1|DR750660 45-L022342-065-009-E06-SeLA MPIZ-ADI... 50 4e-004
gb|DR750661.1|DR750661 45-L022343-065-009-E06-SeLB MPIZ-ADI... 50 4e-004
gb|AF249309.1|AF249309 Arabidopsis thaliana putative transc... 50 4e-004
gb|BV008056.1| MASC_STS15898 Arabidopsis thaliana (Guecking... 50 4e-004
gb|BV008057.1| MASC_STS15904 Arabidopsis thaliana (Koncheze... 50 4e-004
gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome II... 50 4e-004
gb|AY519581.1| Arabidopsis thaliana MYB transcription facto... 50 4e-004
emb|BX815211.1|CNS0AAGG Arabidopsis thaliana Full-length cD... 50 4e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 50 4e-004
ref|NM_110979.2| Arabidopsis thaliana MYB106; DNA binding /... 50 4e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 50 4e-004
gb|DN604581.1|DN604581 JCAt5g61420 Arabidopsis Gateway cDNA... 46 0.006
gb|DR751443.1|DR751443 06-L021127-065-005-F01-SeLA MPIZ-ADI... 46 0.006
gb|AF175998.1|AF175998 Arabidopsis thaliana putative transc... 46 0.006
emb|AX506861.1| Sequence 1556 from Patent WO0216655 46 0.006
emb|AX651823.1| Sequence 679 from Patent WO03000898 46 0.006
gb|AY519643.1| Arabidopsis thaliana MYB transcription facto... 46 0.006
emb|BX830516.1|CNS0A289 Arabidopsis thaliana Full-length cD... 46 0.006
dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.006
ref|NM_180910.1| Arabidopsis thaliana MYB28; DNA binding / ... 46 0.006
ref|NM_125535.2| Arabidopsis thaliana MYB28; DNA binding / ... 46 0.006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.006
emb|AL091598.1|CNS00UY8 Arabidopsis thaliana genome survey ... 44 0.024
emb|CR405437.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.024
emb|CR405438.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.024
gb|CW847294.1|CW847294 GT14330.Ds5.05.23.2004.jx60.444 Arab... 44 0.024
gb|AY200864.1|AY200864 AY200864 Arabidopsis thaliana Landsb... 44 0.024
gb|AY200865.1|AY200865 AY200865 Arabidopsis thaliana Landsb... 44 0.024
gb|T22593.1|T22593 4601 Lambda-PRL2 Arabidopsis thaliana cD... 44 0.024
gb|T43937.1|T43937 7200 Lambda-PRL2 Arabidopsis thaliana cD... 44 0.024
gb|AI993846.1|AI993846 701515156 A. thaliana, Ohio State cl... 44 0.024
gb|AU238168.1|AU238168 AU238168 RAFL16 Arabidopsis thaliana... 44 0.024
gb|CB255433.1|CB255433 42-E012998-019-004-C12-T7R MPIZ-ADIS... 44 0.024
gb|DR751187.1|DR751187 19-L022342-065-009-C03-SeLA MPIZ-ADI... 44 0.024
gb|AF062887.1|AF062887 Arabidopsis thaliana putative transc... 44 0.024
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.024
emb|AX507298.1| Sequence 1993 from Patent WO0216655 44 0.024
emb|AX651296.1| Sequence 81 from Patent WO03000898 44 0.024
gb|BT006244.1| Arabidopsis thaliana At1g18570 mRNA, complet... 44 0.024
gb|AC026238.2| Arabidopsis thaliana chromosome I BAC F25I16... 44 0.024
gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BA... 44 0.024
gb|AY519555.1| Arabidopsis thaliana MYB transcription facto... 44 0.024
emb|BX815450.1|CNS0ABCE Arabidopsis thaliana Full-length cD... 44 0.024
emb|BX815802.1|CNS0ABCU Arabidopsis thaliana Full-length cD... 44 0.024
emb|BX814902.1|CNS0ACDI Arabidopsis thaliana Full-length cD... 44 0.024
dbj|AK117331.1| Arabidopsis thaliana At1g18570 mRNA for unk... 44 0.024
ref|NM_101715.3| Arabidopsis thaliana MYB51; DNA binding / ... 44 0.024
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.024
gb|Z17896.1|Z17896 ATTS0380 AC16H Arabidopsis thaliana cDNA... 42 0.095
gb|H36879.1|H36879 15008 Lambda-PRL2 Arabidopsis thaliana c... 42 0.095
gb|T46204.1|T46204 9467 Lambda-PRL2 Arabidopsis thaliana cD... 42 0.095
gb|AV824396.1|AV824396 AV824396 RAFL6 Arabidopsis thaliana ... 42 0.095
gb|AV831076.1|AV831076 AV831076 RAFL9 Arabidopsis thaliana ... 42 0.095
gb|CB256655.1|CB256655 66-E012744-027-007-D18-T7R MPIZ-ADIS... 42 0.095
gb|AV553519.1|AV553519 AV553519 Arabidopsis thaliana roots ... 42 0.095
gb|DN604568.1|DN604568 JCAt4g38620 Arabidopsis Gateway cDNA... 42 0.095
gb|DN604580.1|DN604580 JCAt1g74650 Arabidopsis Gateway cDNA... 42 0.095
gb|DN604610.1|DN604610 JCAt3g06490 Arabidopsis Gateway cDNA... 42 0.095
gb|DR751182.1|DR751182 19-L021127-065-005-C03-SeLA MPIZ-ADI... 42 0.095
gb|DR751183.1|DR751183 19-L021131-065-005-C03-SeLB MPIZ-ADI... 42 0.095
gb|DR751227.1|DR751227 17-L022342-065-009-A03-SeLA MPIZ-ADI... 42 0.095
gb|DR751228.1|DR751228 17-L022343-065-009-A03-SeLB MPIZ-ADI... 42 0.095
gb|DR751678.1|DR751678 12-L022342-065-009-D02-SeLA MPIZ-ADI... 42 0.095
gb|DR751679.1|DR751679 12-L022343-065-009-D02-SeLB MPIZ-ADI... 42 0.095
gb|AF062860.1|AF062860 Arabidopsis thaliana putative transc... 42 0.095
gb|AF262733.2|AF262733 Arabidopsis thaliana putative transc... 42 0.095
gb|AY140037.1| Arabidopsis thaliana putative transcription ... 42 0.095
gb|AY070100.1| Arabidopsis thaliana putative transcription ... 42 0.095
gb|AY123004.1| Arabidopsis thaliana putative transcription ... 42 0.095
emb|AX507387.1| Sequence 2082 from Patent WO0216655 42 0.095
gb|BT006302.1| Arabidopsis thaliana At4g38620 mRNA, complet... 42 0.095
gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis tha... 42 0.095
gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis tha... 42 0.095
gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 B... 42 0.095
gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BA... 42 0.095
gb|AY519571.1| Arabidopsis thaliana MYB transcription facto... 42 0.095
gb|AY519584.1| Arabidopsis thaliana MYB transcription facto... 42 0.095
gb|AY519615.1| Arabidopsis thaliana MYB transcription facto... 42 0.095
emb|BX814742.1|CNS0AEA2 Arabidopsis thaliana Full-length cD... 42 0.095
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.095
emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome... 42 0.095
emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome ... 42 0.095
emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosom... 42 0.095
emb|X90387.1|ATCY13GEN A.thaliana DNA for cY13 gene 42 0.095
emb|X90383.1|ATY13GENE A.thaliana DNA for Y13 gene 42 0.095
emb|CS137618.1| Sequence 589 from Patent WO2005047516 42 0.095
emb|CS137880.1| Sequence 851 from Patent WO2005047516 42 0.095
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.095
ref|NM_111525.2| Arabidopsis thaliana MYB108; DNA binding /... 42 0.095
ref|NM_120023.2| Arabidopsis thaliana MYB4; transcription f... 42 0.095
ref|NM_106123.3| Arabidopsis thaliana DNA binding / transcr... 42 0.095
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.095
gb|AQ969545.1|AQ969545 LERJO14TF LERG Arabidopsis thaliana ... 40 0.37
gb|AQ969546.1|AQ969546 LERJO14TR LERG Arabidopsis thaliana ... 40 0.37
gb|AV827754.1|AV827754 AV827754 RAFL9 Arabidopsis thaliana ... 40 0.37
gb|BP562693.1|BP562693 BP562693 RAFL14 Arabidopsis thaliana... 40 0.37
gb|DR751504.1|DR751504 03-L021127-065-005-C01-SeLA MPIZ-ADI... 40 0.37
gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-bi... 40 0.37
gb|AF176002.1|AF176002 Arabidopsis thaliana putative transc... 40 0.37
gb|AY072387.1| Arabidopsis thaliana putative MYB family tra... 40 0.37
emb|AX507651.1| Sequence 2346 from Patent WO0216655 40 0.37
emb|AX651705.1| Sequence 535 from Patent WO03000898 40 0.37
gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I... 40 0.37
gb|AY519573.1| Arabidopsis thaliana MYB transcription facto... 40 0.37
emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cD... 40 0.37
emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome... 40 0.37
emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosom... 40 0.37
emb|X90385.1|ATY49GENE A.thaliana DNA for Y49 gene 40 0.37
emb|CS137944.1| Sequence 915 from Patent WO2005047516 40 0.37
ref|NM_118827.1| Arabidopsis thaliana MYB97; DNA binding / ... 40 0.37
ref|NM_127224.3| Arabidopsis thaliana MYB7; DNA binding / t... 40 0.37
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 40 0.37
>gb|CK119118.1|CK119118 214c05.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011C05214
5-PRIME, mRNA sequence
Length = 784
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 399 aggacagacaacgagatcaagaactactggaac 431
>gb|DN604579.1|DN604579 JCAt3g01140 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 637
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 290 aggacagacaacgagatcaagaactactggaac 322
>gb|DR750660.1|DR750660 45-L022342-065-009-E06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-E06, mRNA sequence
Length = 879
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 367 aggacagacaacgagatcaagaactactggaac 399
>gb|DR750661.1|DR750661 45-L022343-065-009-E06-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-E06, mRNA sequence
Length = 865
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 834 aggacagacaacgagatcaagaactactggaac 802
>gb|AF249309.1|AF249309 Arabidopsis thaliana putative transcription factor (MYB106) mRNA,
complete cds
Length = 1038
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 295 aggacagacaacgagatcaagaactactggaac 327
>gb|BV008056.1| MASC_STS15898 Arabidopsis thaliana (Gueckingen-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 653
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 391 aggacagacaacgagatcaagaactactggaac 423
>gb|BV008057.1| MASC_STS15904 Arabidopsis thaliana (Konchezero accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 496
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 368 aggacagacaacgagatcaagaactactggaac 400
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence,
complete sequence
Length = 93735
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 49726 aggacagacaacgagatcaagaactactggaac 49758
>gb|AY519581.1| Arabidopsis thaliana MYB transcription factor (At3g01140) mRNA,
complete cds
Length = 1038
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 295 aggacagacaacgagatcaagaactactggaac 327
>emb|BX815211.1|CNS0AAGG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS42ZA11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1567
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 711 aggacagacaacgagatcaagaactactggaac 679
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 53162 aggacagacaacgagatcaagaactactggaac 53194
Score = 42.1 bits (21), Expect = 0.095
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactgga 426
||||||||| |||||||||||||||
Sbjct: 2068300 gacaacgagatcaagaactactgga 2068276
>ref|NM_110979.2| Arabidopsis thaliana MYB106; DNA binding / transcription factor
AT3G01140 (MYB106) mRNA, complete cds
Length = 1543
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 577 aggacagacaacgagatcaagaactactggaac 609
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| ||||||||| |||||||||||||||||
Sbjct: 47446 aggacagacaacgagatcaagaactactggaac 47414
Score = 42.1 bits (21), Expect = 0.095
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactgga 426
||||||||| |||||||||||||||
Sbjct: 2005714 gacaacgagatcaagaactactgga 2005738
>gb|DN604581.1|DN604581 JCAt5g61420 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 619
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 296 gacaacgagatcaagaactactggaac 322
>gb|DR751443.1|DR751443 06-L021127-065-005-F01-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-F01, mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 372 gacaacgagatcaagaactactggaac 398
>gb|AF175998.1|AF175998 Arabidopsis thaliana putative transcription factor (MYB28) mRNA,
complete cds
Length = 1101
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaac 327
>emb|AX506861.1| Sequence 1556 from Patent WO0216655
Length = 1101
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaac 327
>emb|AX651823.1| Sequence 679 from Patent WO03000898
Length = 1100
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaac 327
>gb|AY519643.1| Arabidopsis thaliana MYB transcription factor (At5g61420) mRNA,
complete cds
Length = 1101
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaac 327
>emb|BX830516.1|CNS0A289 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB88ZE08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1710
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 583 gacaacgagatcaagaactactggaac 609
>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13
Length = 80376
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 60833 gacaacgagatcaagaactactggaac 60807
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 21925588 gacaacgagatcaagaactactggaac 21925562
>ref|NM_180910.1| Arabidopsis thaliana MYB28; DNA binding / transcription factor
AT5G61420 (MYB28) transcript variant AT5G61420.1 mRNA,
complete cds
Length = 1805
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 681 gacaacgagatcaagaactactggaac 707
>ref|NM_125535.2| Arabidopsis thaliana MYB28; DNA binding / transcription factor
AT5G61420 (MYB28) transcript variant AT5G61420.2 mRNA,
complete cds
Length = 1425
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaac 327
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||||||| |||||||||||||||||
Sbjct: 24707501 gacaacgagatcaagaactactggaac 24707475
>emb|AL091598.1|CNS00UY8 Arabidopsis thaliana genome survey sequence SP6 end of BAC T8E2 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 426 accgataacgagatcaagaactactggaac 455
>emb|CR405437.1| Arabidopsis thaliana T-DNA flanking sequence GK-878E11-026470,
genomic survey sequence
Length = 439
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 340 accgataacgagatcaagaactactggaac 369
>emb|CR405438.1| Arabidopsis thaliana T-DNA flanking sequence GK-878E11-026524,
genomic survey sequence
Length = 451
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 332 accgataacgagatcaagaactactggaac 361
>gb|CW847294.1|CW847294 GT14330.Ds5.05.23.2004.jx60.444 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT14330, DNA sequence
Length = 444
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 309 ttctccccggaggaggaggaga 330
||||||||||||||||||||||
Sbjct: 192 ttctccccggaggaggaggaga 171
>gb|AY200864.1|AY200864 AY200864 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone ET9614.Ds3.10.13.00.b.366, DNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 432 tacctcaagaagagggtcgagggcaa 457
|||||||||||||| |||||||||||
Sbjct: 197 tacctcaagaagagtgtcgagggcaa 222
>gb|AY200865.1|AY200865 AY200865 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone ET9614.Ds3.10.17.00.b.649, DNA sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 432 tacctcaagaagagggtcgagggcaa 457
|||||||||||||| |||||||||||
Sbjct: 196 tacctcaagaagagtgtcgagggcaa 221
>gb|T22593.1|T22593 4601 Lambda-PRL2 Arabidopsis thaliana cDNA clone 99M15T7, mRNA
sequence
Length = 413
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 49 accgataacgagatcaagaactactggaac 78
>gb|T43937.1|T43937 7200 Lambda-PRL2 Arabidopsis thaliana cDNA clone 120D18T7, mRNA
sequence
Length = 407
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 52 accgataacgagatcaagaactactggaac 81
>gb|AI993846.1|AI993846 701515156 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701515156, mRNA sequence
Length = 582
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 49 accgataacgagatcaagaactactggaac 78
>gb|AU238168.1|AU238168 AU238168 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-90-B03 5',
mRNA sequence
Length = 639
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 580 accgataacgagatcaagaactactggaac 609
>gb|CB255433.1|CB255433 42-E012998-019-004-C12-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768C124Q 5-PRIME, mRNA sequence
Length = 666
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 557 accgataacgagatcaagaactactggaac 586
>gb|DR751187.1|DR751187 19-L022342-065-009-C03-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-C03, mRNA sequence
Length = 781
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 402 accgataacgagatcaagaactactggaac 431
>gb|AF062887.1|AF062887 Arabidopsis thaliana putative transcription factor (MYB51) mRNA,
complete cds
Length = 1384
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 361 accgataacgagatcaagaactactggaac 390
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 6390085 accgataacgagatcaagaactactggaac 6390114
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 432 tacctcaagaagagggtcgagggcaa 457
|||||||||||||| |||||||||||
Sbjct: 6093022 tacctcaagaagagtgtcgagggcaa 6092997
>emb|AX507298.1| Sequence 1993 from Patent WO0216655
Length = 1059
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 301 accgataacgagatcaagaactactggaac 330
>emb|AX651296.1| Sequence 81 from Patent WO03000898
Length = 1059
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 301 accgataacgagatcaagaactactggaac 330
>gb|BT006244.1| Arabidopsis thaliana At1g18570 mRNA, complete cds
Length = 1059
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 301 accgataacgagatcaagaactactggaac 330
>gb|AC026238.2| Arabidopsis thaliana chromosome I BAC F25I16 genomic sequence, complete
sequence
Length = 44879
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 31034 accgataacgagatcaagaactactggaac 31005
>gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete
sequence
Length = 98950
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 432 tacctcaagaagagggtcgagggcaa 457
|||||||||||||| |||||||||||
Sbjct: 72966 tacctcaagaagagtgtcgagggcaa 72941
>gb|AY519555.1| Arabidopsis thaliana MYB transcription factor (At1g18570) mRNA,
complete cds
Length = 1059
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 301 accgataacgagatcaagaactactggaac 330
>emb|BX815450.1|CNS0ABCE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS60ZH02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1514
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 649 accgataacgagatcaagaactactggaac 678
>emb|BX815802.1|CNS0ABCU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS9ZF06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1636
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 651 accgataacgagatcaagaactactggaac 680
>emb|BX814902.1|CNS0ACDI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS17ZH01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1525
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 536 accgataacgagatcaagaactactggaac 565
>dbj|AK117331.1| Arabidopsis thaliana At1g18570 mRNA for unknown protein, complete
cds, clone: RAFL16-90-B03
Length = 1422
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 580 accgataacgagatcaagaactactggaac 609
>ref|NM_101715.3| Arabidopsis thaliana MYB51; DNA binding / transcription factor
AT1G18570 (MYB51) mRNA, complete cds
Length = 1654
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||| |||||| |||||||||||||||||
Sbjct: 655 accgataacgagatcaagaactactggaac 684
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,019
Number of Sequences: 1013581
Number of extensions: 187019
Number of successful extensions: 24643
Number of sequences better than 0.5: 115
Number of HSP's better than 0.5 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23097
Number of HSP's gapped (non-prelim): 1546
length of query: 530
length of database: 908,940,872
effective HSP length: 20
effective length of query: 510
effective length of database: 888,669,252
effective search space: 453221318520
effective search space used: 453221318520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)