BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF305720.1|AF305720 Arabidopsis thaliana ecotype Columbi... 70 1e-009
ref|NM_106147.1| Arabidopsis thaliana ARR15 (RESPONSE REGUL... 70 1e-009
gb|Z18216.1|Z18216 ATTS0721 Grenoble-B Arabidopsis thaliana... 60 1e-006
gb|AV822952.1|AV822952 AV822952 RAFL5 Arabidopsis thaliana ... 60 1e-006
gb|AF057282.1|AF057282 Arabidopsis thaliana two-component r... 60 1e-006
dbj|AB008487.1| Arabidopsis thaliana ARR4 mRNA for response... 60 1e-006
emb|AX506717.1| Sequence 1412 from Patent WO0216655 60 1e-006
emb|BX817831.1|CNS0ACG5 Arabidopsis thaliana Full-length cD... 60 1e-006
emb|BX817837.1|CNS0ACFZ Arabidopsis thaliana Full-length cD... 60 1e-006
dbj|AB010915.1| Arabidopsis thaliana mRNA for responce regu... 60 1e-006
ref|NM_100921.2| Arabidopsis thaliana ARR4 (RESPONSE REGULA... 60 1e-006
gb|BP842155.1|BP842155 BP842155 RAFL21 Arabidopsis thaliana... 58 4e-006
gb|AY090234.1| Arabidopsis thaliana AT3g57040/F24I3_120 mRN... 58 4e-006
gb|AY133571.1| Arabidopsis thaliana At3g57040/F24I3_120 mRN... 58 4e-006
dbj|AB010918.1| Arabidopsis thaliana mRNA for responce reac... 58 4e-006
ref|NM_115563.2| Arabidopsis thaliana ARR9 (RESPONSE REACTO... 58 4e-006
gb|Z34204.1|Z34204 ATTS3238 Versailles-VB Arabidopsis thali... 54 6e-005
gb|AF170550.1|AF170550 Arabidopsis thaliana germin-like pro... 54 6e-005
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 54 6e-005
gb|AC007067.4|AC007067 Genomic sequence for Arabidopsis tha... 54 6e-005
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 54 6e-005
gb|AV825102.1|AV825102 AV825102 RAFL6 Arabidopsis thaliana ... 46 0.016
gb|AV536923.1|AV536923 AV536923 Arabidopsis thaliana liquid... 46 0.016
gb|AF057281.1|AF057281 Arabidopsis thaliana two-component r... 46 0.016
dbj|AB008488.1| Arabidopsis thaliana ARR5 mRNA for response... 46 0.016
gb|AY072390.1| Arabidopsis thaliana response reactor 2 (ATR... 46 0.016
gb|AY074643.1| Arabidopsis thaliana At2g41310/F13H10.14 mRN... 46 0.016
gb|AY114698.1| Arabidopsis thaliana response reactor 2 (ATR... 46 0.016
emb|AX505944.1| Sequence 639 from Patent WO0216655 46 0.016
emb|AX507119.1| Sequence 1814 from Patent WO0216655 46 0.016
gb|AC005662.3| Arabidopsis thaliana chromosome 2 clone F13H... 46 0.016
emb|BX824631.1|CNS0A6YD Arabidopsis thaliana Full-length cD... 46 0.016
dbj|AB010916.1| Arabidopsis thaliana mRNA for responce reac... 46 0.016
dbj|AB010917.1| Arabidopsis thaliana mRNA for responce reac... 46 0.016
ref|NM_114679.3| Arabidopsis thaliana ARR5 (ARABIDOPSIS RES... 46 0.016
ref|NM_129695.3| Arabidopsis thaliana ATRR3 (RESPONSE REGUL... 46 0.016
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.016
gb|CW799319.1|CW799319 WiscDsLox334D02 Arabidopsis thaliana... 42 0.25
gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F... 42 0.25
gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BA... 42 0.25
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.25
emb|AL049658.1|ATT17F15 Arabidopsis thaliana DNA chromosome... 42 0.25
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.25
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.25
>gb|AF305720.1|AF305720 Arabidopsis thaliana ecotype Columbia response regulator 15 mRNA,
complete cds
Length = 621
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 481 acaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtg 540
||||||||||| || |||||||||||||| ||||| || | |||||||| ||||| ||
Sbjct: 256 acaggatatgaactcctcaagaagatcaaagagtcttcagcactcagagaaatcccagta 315
Query: 541 gtgatcatgtcctctgagaacat 563
||||| ||||| |||||||||||
Sbjct: 316 gtgataatgtcttctgagaacat 338
>ref|NM_106147.1| Arabidopsis thaliana ARR15 (RESPONSE REGULATOR 15); transcription
regulator AT1G74890 (ARR15) mRNA, complete cds
Length = 621
Score = 69.9 bits (35), Expect = 1e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 481 acaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcagagatatcccggtg 540
||||||||||| || |||||||||||||| ||||| || | |||||||| ||||| ||
Sbjct: 256 acaggatatgaactcctcaagaagatcaaagagtcttcagcactcagagaaatcccagta 315
Query: 541 gtgatcatgtcctctgagaacat 563
||||| ||||| |||||||||||
Sbjct: 316 gtgataatgtcttctgagaacat 338
>gb|Z18216.1|Z18216 ATTS0721 Grenoble-B Arabidopsis thaliana cDNA clone GAGa67 5', mRNA
sequence
Length = 731
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 22 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 81
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 82 aggaatcgtc 91
>gb|AV822952.1|AV822952 AV822952 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-13-J02 5',
mRNA sequence
Length = 669
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 330 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 389
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 390 aggaatcgtc 399
>gb|AF057282.1|AF057282 Arabidopsis thaliana two-component response regulator homolog
(IBC7) mRNA, complete cds
Length = 1056
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 347 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 406
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 407 aggaatcgtc 416
>dbj|AB008487.1| Arabidopsis thaliana ARR4 mRNA for response regulator 4, complete
cds
Length = 1193
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 388 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 447
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 448 aggaatcgtc 457
>emb|AX506717.1| Sequence 1412 from Patent WO0216655
Length = 780
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 272 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 331
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 332 aggaatcgtc 341
>emb|BX817831.1|CNS0ACG5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL43ZH11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 979
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 351 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 410
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 411 aggaatcgtc 420
>emb|BX817837.1|CNS0ACFZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZB06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 883
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 304 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 363
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 364 aggaatcgtc 373
>dbj|AB010915.1| Arabidopsis thaliana mRNA for responce regulator1, complete cds
Length = 1227
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 470 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 529
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 530 aggaatcgtc 539
>ref|NM_100921.2| Arabidopsis thaliana ARR4 (RESPONSE REGULATOR 4); transcription
regulator/ two-component response regulator AT1G10470
(ARR4) mRNA, complete cds
Length = 1275
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 470 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 529
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 530 aggaatcgtc 539
>gb|BP842155.1|BP842155 BP842155 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-53-L10 5',
mRNA sequence
Length = 397
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 329 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 388
Query: 509 aggagtcgt 517
|||| ||||
Sbjct: 389 aggaatcgt 397
>gb|AY090234.1| Arabidopsis thaliana AT3g57040/F24I3_120 mRNA, complete cds
Length = 1284
Score = 58.0 bits (29), Expect = 4e-006
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||||||||| || ||||| |||||||||| ||||||| || || || | |||
Sbjct: 694 atgcctggcatgactggttatgatttgctcaagaaagtcaaggaatcatcagcttttaga 753
Query: 529 gatatcccggtggtgatcatgtcctctgagaacattccttcaaggatca 577
||||| || || || ||||||||||| |||||| ||||| |||| ||||
Sbjct: 754 gatataccagtagttatcatgtcctcagagaacgttcctgcaagaatca 802
>gb|AY133571.1| Arabidopsis thaliana At3g57040/F24I3_120 mRNA, complete cds
Length = 705
Score = 58.0 bits (29), Expect = 4e-006
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||||||||| || ||||| |||||||||| ||||||| || || || | |||
Sbjct: 247 atgcctggcatgactggttatgatttgctcaagaaagtcaaggaatcatcagcttttaga 306
Query: 529 gatatcccggtggtgatcatgtcctctgagaacattccttcaaggatca 577
||||| || || || ||||||||||| |||||| ||||| |||| ||||
Sbjct: 307 gatataccagtagttatcatgtcctcagagaacgttcctgcaagaatca 355
>dbj|AB010918.1| Arabidopsis thaliana mRNA for responce reactor4, complete cds
Length = 1087
Score = 58.0 bits (29), Expect = 4e-006
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||||||||| || ||||| |||||||||| ||||||| || || || | |||
Sbjct: 451 atgcctggcatgactggttatgatttgctcaagaaagtcaaggaatcatcagcttttaga 510
Query: 529 gatatcccggtggtgatcatgtcctctgagaacattccttcaaggatca 577
||||| || || || ||||||||||| |||||| ||||| |||| ||||
Sbjct: 511 gatataccagtagttatcatgtcctcagagaacgttcctgcaagaatca 559
>ref|NM_115563.2| Arabidopsis thaliana ARR9 (RESPONSE REACTOR 4); transcription
regulator AT3G57040 (ARR9) mRNA, complete cds
Length = 1354
Score = 58.0 bits (29), Expect = 4e-006
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||||||||| || ||||| |||||||||| ||||||| || || || | |||
Sbjct: 692 atgcctggcatgactggttatgatttgctcaagaaagtcaaggaatcatcagcttttaga 751
Query: 529 gatatcccggtggtgatcatgtcctctgagaacattccttcaaggatca 577
||||| || || || ||||||||||| |||||| ||||| |||| ||||
Sbjct: 752 gatataccagtagttatcatgtcctcagagaacgttcctgcaagaatca 800
>gb|Z34204.1|Z34204 ATTS3238 Versailles-VB Arabidopsis thaliana cDNA clone VBVEC08,
mRNA sequence
Length = 411
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 267 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 326
Query: 509 agg 511
|||
Sbjct: 327 agg 329
>gb|AF170550.1|AF170550 Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete
cds
Length = 5437
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 112 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 171
Query: 509 agg 511
|||
Sbjct: 172 agg 174
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 3443134 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 3443075
Query: 509 agg 511
|||
Sbjct: 3443074 agg 3443072
>gb|AC007067.4|AC007067 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1,
complete sequence
Length = 89934
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 24399 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 24340
Query: 509 agg 511
|||
Sbjct: 24339 agg 24337
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct: 3443314 tgatcatcactgattactgtatgcctggaatgactggttatgagcttctcaagaagatta 3443255
Query: 509 agg 511
|||
Sbjct: 3443254 agg 3443252
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 481 acaggatatgacctgctcaagaagatcaa 509
||||||||||| || ||||||||||||||
Sbjct: 28135810 acaggatatgaactcctcaagaagatcaa 28135782
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 523 ctcagagatatcccggtggtgatcatgtcctctgagaacat 563
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 28135676 ctcagagaaatcccagtagtgataatgtcttctgagaacat 28135636
>gb|AV825102.1|AV825102 AV825102 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-86-G21 5',
mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 336 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 395
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 396 gaaataccagttgtgattatgtcttcagagaacat 430
>gb|AV536923.1|AV536923 AV536923 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0702R 5', mRNA
sequence
Length = 565
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 306 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 365
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 366 gaaataccagttgtgattatgtcttcagagaacat 400
>gb|AF057281.1|AF057281 Arabidopsis thaliana two-component response regulator homolog
(IBC6) mRNA, complete cds
Length = 1298
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 325 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 384
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 385 gaaataccagttgtgattatgtcttcagagaacat 419
>dbj|AB008488.1| Arabidopsis thaliana ARR5 mRNA for response regulator 5, complete
cds
Length = 891
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 317 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 376
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 377 gaaataccagttgtgattatgtcttcagagaacat 411
>gb|AY072390.1| Arabidopsis thaliana response reactor 2 (ATRR2) (At3g48100) mRNA,
complete cds
Length = 911
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 337 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 396
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 397 gaaataccagttgtgattatgtcttcagagaacat 431
>gb|AY074643.1| Arabidopsis thaliana At2g41310/F13H10.14 mRNA, complete cds
Length = 680
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaa 503
||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 231 acagattactgtatgcctggcatgactggttatgatttgctcaagaa 277
>gb|AY114698.1| Arabidopsis thaliana response reactor 2 (ATRR2) (At3g48100) mRNA,
complete cds
Length = 634
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 268 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 327
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 328 gaaataccagttgtgattatgtcttcagagaacat 362
>emb|AX505944.1| Sequence 639 from Patent WO0216655
Length = 678
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaa 503
||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 229 acagattactgtatgcctggcatgactggttatgatttgctcaagaa 275
>emb|AX507119.1| Sequence 1814 from Patent WO0216655
Length = 555
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 268 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 327
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 328 gaaataccagttgtgattatgtcttcagagaacat 362
>gb|AC005662.3| Arabidopsis thaliana chromosome 2 clone F13H10 map CIC11C08, complete
sequence
Length = 96066
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaa 503
||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 49157 acagattactgtatgcctggcatgactggttatgatttgctcaagaa 49111
>emb|BX824631.1|CNS0A6YD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH60ZH04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1337
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 359 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 418
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 419 gaaataccagttgtgattatgtcttcagagaacat 453
>dbj|AB010916.1| Arabidopsis thaliana mRNA for responce reactor2, complete cds
Length = 980
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 402 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 461
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 462 gaaataccagttgtgattatgtcttcagagaacat 496
>dbj|AB010917.1| Arabidopsis thaliana mRNA for responce reactor3, complete cds
Length = 1346
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaa 503
||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 439 acagattactgtatgcctggcatgactggttatgatttgctcaagaa 485
>ref|NM_114679.3| Arabidopsis thaliana ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5);
transcription regulator/ two-component response
regulator AT3G48100 (ARR5) mRNA, complete cds
Length = 1374
Score = 46.1 bits (23), Expect = 0.016
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctctcaga 528
|||||||| ||||| |||||||| || || ||||||||||| || || || || |||||
Sbjct: 402 atgcctgggatgactggatatgaactactgaagaagatcaaagaatcatcagctttcaga 461
Query: 529 gatatcccggtggtgatcatgtcctctgagaacat 563
|| || || || ||||| ||||| || ||||||||
Sbjct: 462 gaaataccagttgtgattatgtcttcagagaacat 496
>ref|NM_129695.3| Arabidopsis thaliana ATRR3 (RESPONSE REGULATOR 3); transcription
regulator AT2G41310 (ATRR3) mRNA, complete cds
Length = 1824
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaa 503
||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 576 acagattactgtatgcctggcatgactggttatgatttgctcaagaa 622
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaa 503
||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 17229797 acagattactgtatgcctggcatgactggttatgatttgctcaagaa 17229843
>gb|CW799319.1|CW799319 WiscDsLox334D02 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 837
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 523 ctcagagatatcccggtggtgatcatgtcctctgagaacat 563
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 609 ctcagagaaatcccagtagtgataatgtcttctgagaacat 649
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 481 acaggatatgacctgctcaagaagatcaa 509
||||||||||| || ||||||||||||||
Sbjct: 475 acaggatatgaactcctcaagaagatcaa 503
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
Length = 115721
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 523 ctcagagatatcccggtggtgatcatgtcctctgagaacat 563
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 43015 ctcagagaaatcccagtagtgataatgtcttctgagaacat 43055
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 481 acaggatatgacctgctcaagaagatcaa 509
||||||||||| || ||||||||||||||
Sbjct: 42881 acaggatatgaactcctcaagaagatcaa 42909
>gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BAC F9E10 genomic sequence, complete
sequence
Length = 97263
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 523 ctcagagatatcccggtggtgatcatgtcctctgagaacat 563
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 71352 ctcagagaaatcccagtagtgataatgtcttctgagaacat 71392
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 481 acaggatatgacctgctcaagaagatcaa 509
||||||||||| || ||||||||||||||
Sbjct: 71218 acaggatatgaactcctcaagaagatcaa 71246
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaa 509
|||||||| ||||| |||||||| || || |||||||||||
Sbjct: 17644768 atgcctgggatgactggatatgaactactgaagaagatcaa 17644808
>emb|AL049658.1|ATT17F15 Arabidopsis thaliana DNA chromosome 3, BAC clone T17F15
Length = 107950
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaa 509
|||||||| ||||| |||||||| || || |||||||||||
Sbjct: 14198 atgcctgggatgactggatatgaactactgaagaagatcaa 14238
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 481 acaggatatgacctgctcaagaagatcaa 509
||||||||||| || ||||||||||||||
Sbjct: 12373466 acaggatatgaactcctcaagaagatcaa 12373438
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 523 ctcagagatatcccggtggtgatcatgtcctctgagaacat 563
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 12373332 ctcagagaaatcccagtagtgataatgtcttctgagaacat 12373292
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 469 atgcctggcatgacaggatatgacctgctcaagaagatcaa 509
|||||||| ||||| |||||||| || || |||||||||||
Sbjct: 17771261 atgcctgggatgactggatatgaactactgaagaagatcaa 17771221
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 609,395
Number of Sequences: 1013581
Number of extensions: 609395
Number of successful extensions: 45722
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44034
Number of HSP's gapped (non-prelim): 1688
length of query: 1343
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1323
effective length of database: 888,669,252
effective search space: 1175709420396
effective search space used: 1175709420396
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)