BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455862.2.1
(712 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome II... 46 0.008
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.008
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.008
>gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC F7O18 genomic sequence,
complete sequence
Length = 95310
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 598 ttctttctctctgttttttcttt 620
|||||||||||||||||||||||
Sbjct: 48571 ttctttctctctgttttttcttt 48549
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 598 ttctttctctctgttttttcttt 620
|||||||||||||||||||||||
Sbjct: 1266197 ttctttctctctgttttttcttt 1266175
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 598 ttctttctctctgttttttcttt 620
|||||||||||||||||||||||
Sbjct: 1270224 ttctttctctctgttttttcttt 1270202
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 300,198
Number of Sequences: 1013581
Number of extensions: 300198
Number of successful extensions: 26028
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25712
Number of HSP's gapped (non-prelim): 316
length of query: 712
length of database: 908,940,872
effective HSP length: 20
effective length of query: 692
effective length of database: 888,669,252
effective search space: 614959122384
effective search space used: 614959122384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)