BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV793183.1|AV793183 AV793183 RAFL7 Arabidopsis thaliana ... 52 3e-004
gb|AV551139.1|AV551139 AV551139 Arabidopsis thaliana roots ... 52 3e-004
gb|AF462852.1|AF462852 Arabidopsis thaliana AT5g48030/MDN11... 52 3e-004
gb|AY103490.1| Arabidopsis thaliana GFA2 (GFA2) mRNA, compl... 52 3e-004
gb|AY085227.1| Arabidopsis thaliana clone 14006 mRNA, compl... 52 3e-004
dbj|AK118588.1| Arabidopsis thaliana At5g48030 mRNA for put... 52 3e-004
ref|NM_124177.2| Arabidopsis thaliana GFA2 (GAMETOPHYTIC FA... 52 3e-004
gb|AU239457.1|AU239457 AU239457 RAFL19 Arabidopsis thaliana... 50 0.001
gb|CL512358.1|CL512358 SAIL_859_B07.v1 SAIL Collection Arab... 44 0.072
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.072
gb|AC079041.4|AC079041 Arabidopsis thaliana chromosome 1 BA... 44 0.072
dbj|AB007651.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.072
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.072
ref|NM_102915.2| Arabidopsis thaliana DNA binding / DNA-dir... 44 0.072
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.072
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.072
gb|AV788779.1|AV788779 AV788779 RAFL6 Arabidopsis thaliana ... 42 0.29
gb|AV544254.1|AV544254 AV544254 Arabidopsis thaliana roots ... 42 0.29
gb|BP640790.1|BP640790 BP640790 RAFL19 Arabidopsis thaliana... 42 0.29
gb|BP647323.1|BP647323 BP647323 RAFL19 Arabidopsis thaliana... 42 0.29
gb|AY070384.1| Arabidopsis thaliana putative DNA-binding pr... 42 0.29
gb|AY096576.1| Arabidopsis thaliana putative DNA-binding pr... 42 0.29
emb|AX651922.1| Sequence 799 from Patent WO03000898 42 0.29
gb|AC008047.3|AC008047 Genomic sequence for Arabidopsis tha... 42 0.29
gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A... 42 0.29
emb|BX815860.1|CNS0AAVL Arabidopsis thaliana Full-length cD... 42 0.29
gb|BT021987.1| Arabidopsis thaliana At2g01340 mRNA, complet... 42 0.29
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.29
ref|NM_126195.2| Arabidopsis thaliana unknown protein AT2G0... 42 0.29
ref|NM_105027.3| Arabidopsis thaliana DNA binding AT1G63480... 42 0.29
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.29
>gb|AV793183.1|AV793183 AV793183 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-18-G17 3',
mRNA sequence
Length = 445
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatc 532
||||| ||||| |||||||| |||||||||| ||| || |||||||||||
Sbjct: 139 tctctgcggaacacaggatcttcacgaaccttgagagtaacataaagatc 188
>gb|AV551139.1|AV551139 AV551139 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121g02R 5', mRNA sequence
Length = 369
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatc 532
||||| ||||| |||||||| |||||||||| ||| || |||||||||||
Sbjct: 357 tctctgcggaacacaggatcttcacgaaccttgagagtaacataaagatc 308
>gb|AF462852.1|AF462852 Arabidopsis thaliana AT5g48030/MDN11_11 mRNA sequence
Length = 1345
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatc 532
||||| ||||| |||||||| |||||||||| ||| || |||||||||||
Sbjct: 1207 tctctgcggaacacaggatcttcacgaaccttgagagtaacataaagatc 1158
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1179 ggatggagcttctttgcaagcccataataggcctttttgat 1219
|||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 517 ggatggagtttcttagcaagcccataataagccttcttgat 477
>gb|AY103490.1| Arabidopsis thaliana GFA2 (GFA2) mRNA, complete cds; nuclear gene for
mitochondrial product
Length = 1622
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatc 532
||||| ||||| |||||||| |||||||||| ||| || |||||||||||
Sbjct: 1166 tctctgcggaacacaggatcttcacgaaccttgagagtaacataaagatc 1117
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1179 ggatggagcttctttgcaagcccataataggcctttttgat 1219
|||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 476 ggatggagtttcttagcaagcccataataagccttcttgat 436
>gb|AY085227.1| Arabidopsis thaliana clone 14006 mRNA, complete sequence
Length = 1677
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatc 532
||||| ||||| |||||||| |||||||||| ||| || |||||||||||
Sbjct: 1175 tctctgcggaacacaggatcttcacgaaccttgagagtaacataaagatc 1126
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1179 ggatggagcttctttgcaagcccataataggcctttttgat 1219
|||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 485 ggatggagtttcttagcaagcccataataagccttcttgat 445
>dbj|AK118588.1| Arabidopsis thaliana At5g48030 mRNA for putative DnaJ protein,
complete cds, clone: RAFL19-83-D14
Length = 1684
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatc 532
||||| ||||| |||||||| |||||||||| ||| || |||||||||||
Sbjct: 1151 tctctgcggaacacaggatcttcacgaaccttgagagtaacataaagatc 1102
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1179 ggatggagcttctttgcaagcccataataggcctttttgat 1219
|||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 461 ggatggagtttcttagcaagcccataataagccttcttgat 421
>ref|NM_124177.2| Arabidopsis thaliana GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein
binding / unfolded protein binding AT5G48030 (GFA2) mRNA,
complete cds
Length = 1740
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 483 tctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatc 532
||||| ||||| |||||||| |||||||||| ||| || |||||||||||
Sbjct: 1207 tctctgcggaacacaggatcttcacgaaccttgagagtaacataaagatc 1158
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1179 ggatggagcttctttgcaagcccataataggcctttttgat 1219
|||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 517 ggatggagtttcttagcaagcccataataagccttcttgat 477
>gb|AU239457.1|AU239457 AU239457 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-83-D14 5',
mRNA sequence
Length = 638
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1179 ggatggagcttctttgcaagcccataataggcctttttgat 1219
|||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 461 ggatggagtttcttagcaagcccataataagccttcttgat 421
>gb|CL512358.1|CL512358 SAIL_859_B07.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_859_B07.v1, DNA sequence
Length = 901
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccaccaa 987
||||||||||||||||||||||
Sbjct: 260 ccaccgccaccgccaccaccaa 239
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 964 caccaccgccaccgccaccacc 985
||||||||||||||||||||||
Sbjct: 11412255 caccaccgccaccgccaccacc 11412234
>gb|AC079041.4|AC079041 Arabidopsis thaliana chromosome 1 BAC F5M6 genomic sequence, complete
sequence
Length = 119420
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 964 caccaccgccaccgccaccacc 985
||||||||||||||||||||||
Sbjct: 85666 caccaccgccaccgccaccacc 85687
>dbj|AB007651.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD9
Length = 85421
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccaccaa 987
||||||||||||||||||||||
Sbjct: 52074 ccaccgccaccgccaccaccaa 52053
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccaccaa 987
||||||||||||||||||||||
Sbjct: 7103515 ccaccgccaccgccaccaccaa 7103494
>ref|NM_102915.2| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase/ actin
binding AT1G31810 mRNA, complete cds
Length = 3942
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 964 caccaccgccaccgccaccacc 985
||||||||||||||||||||||
Sbjct: 1850 caccaccgccaccgccaccacc 1871
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccaccaa 987
||||||||||||||||||||||
Sbjct: 7413147 ccaccgccaccgccaccaccaa 7413126
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 964 caccaccgccaccgccaccacc 985
||||||||||||||||||||||
Sbjct: 11403455 caccaccgccaccgccaccacc 11403434
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 23545092 ccaccgccaccgccaccacca 23545072
>gb|AV788779.1|AV788779 AV788779 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-80-P18 3',
mRNA sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 283 ccaccgccaccgccaccacca 263
>gb|AV544254.1|AV544254 AV544254 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ37f02F 3', mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 272 ccaccgccaccgccaccacca 252
>gb|BP640790.1|BP640790 BP640790 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-53-A01 3',
mRNA sequence
Length = 423
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 304 ccaccgccaccgccaccacca 284
>gb|BP647323.1|BP647323 BP647323 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-75-B22 3',
mRNA sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 307 ccaccgccaccgccaccacca 287
>gb|AY070384.1| Arabidopsis thaliana putative DNA-binding protein (At1g63480) mRNA,
complete cds
Length = 1666
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 711 ccaccgccaccgccaccacca 731
>gb|AY096576.1| Arabidopsis thaliana putative DNA-binding protein (At1g63480) mRNA,
complete cds
Length = 1117
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 259 ccaccgccaccgccaccacca 279
>emb|AX651922.1| Sequence 799 from Patent WO03000898
Length = 678
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 572 ccaccgccaccgccaccacca 592
>gb|AC008047.3|AC008047 Genomic sequence for Arabidopsis thaliana BAC F2K11 from chromosome I,
complete sequence
Length = 100867
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 55404 ccaccgccaccgccaccacca 55424
>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete
sequence
Length = 94029
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 74256 ccaccgccaccgccaccacca 74276
>emb|BX815860.1|CNS0AAVL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH13ZB07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1728
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 696 ccaccgccaccgccaccacca 716
>gb|BT021987.1| Arabidopsis thaliana At2g01340 mRNA, complete cds
Length = 782
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 592 ccaccgccaccgccaccacca 612
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 7782744 ccaccgccaccgccaccacca 7782724
>ref|NM_126195.2| Arabidopsis thaliana unknown protein AT2G01340 mRNA, complete cds
Length = 1068
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 602 ccaccgccaccgccaccacca 622
>ref|NM_105027.3| Arabidopsis thaliana DNA binding AT1G63480 mRNA, complete cds
Length = 1853
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 711 ccaccgccaccgccaccacca 731
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 164659 ccaccgccaccgccaccacca 164679
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 676,269
Number of Sequences: 1013581
Number of extensions: 676269
Number of successful extensions: 53065
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51263
Number of HSP's gapped (non-prelim): 1802
length of query: 1565
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1544
effective length of database: 887,655,671
effective search space: 1370540356024
effective search space used: 1370540356024
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)