BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455820.2.1
(1312 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-... 178 2e-042
gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R2... 178 2e-042
gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C... 178 2e-042
emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cD... 178 2e-042
emb|CQ769015.1| Sequence 19 from Patent WO2004007730 178 2e-042
gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 178 2e-042
ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 178 2e-042
ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 178 2e-042
gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R2... 155 2e-035
gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, compl... 155 2e-035
emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cD... 155 2e-035
emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cD... 155 2e-035
gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence 155 2e-035
gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 155 2e-035
ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylste... 155 2e-035
ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylste... 155 2e-035
gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots ... 139 1e-030
gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, compl... 131 3e-028
ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylste... 131 3e-028
emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cD... 119 1e-024
gb|AI993743.1|AI993743 701497365 A. thaliana, Ohio State cl... 117 5e-024
gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Siliqu... 117 5e-024
gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana... 117 5e-024
gb|AV550171.1|AV550171 AV550171 Arabidopsis thaliana roots ... 115 2e-023
emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cD... 107 5e-021
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 84 7e-014
gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis tha... 84 7e-014
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 84 7e-014
gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana... 82 3e-013
gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana... 82 3e-013
gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana... 82 3e-013
gb|AV539858.1|AV539858 AV539858 Arabidopsis thaliana roots ... 76 2e-011
gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P... 70 1e-009
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 70 1e-009
gb|BP581099.1|BP581099 BP581099 RAFL14 Arabidopsis thaliana... 58 4e-006
gb|CW801524.1|CW801524 WiscDsLox493H10 Arabidopsis thaliana... 44 0.061
gb|AI993071.1|AI993071 701495233 A. thaliana, Ohio State cl... 44 0.061
gb|BP652719.1|BP652719 BP652719 RAFL19 Arabidopsis thaliana... 42 0.24
>gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase (SMO) mRNA,
partial cds
Length = 720
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 666 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 607
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 606 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 547
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 546 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 487
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 486 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 427
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 426 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 367
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 366 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 307
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 306 gaatacaaaatcctcaatgatgaagtagaa 277
>gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R20198) putative C-4
sterol methyl oxidase (At2g29390) mRNA, complete cds
Length = 1076
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 794 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 735
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 734 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 675
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 674 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 615
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 614 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 555
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 554 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 495
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 494 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 435
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 434 gaatacaaaatcctcaatgatgaagtagaa 405
>gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C-4 sterol methyl
oxidase (At2g29390) mRNA, complete cds
Length = 814
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 729 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 670
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 669 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 610
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 609 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 550
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 549 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 490
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 489 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 430
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 429 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 370
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 369 gaatacaaaatcctcaatgatgaagtagaa 340
>emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1281
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 1059 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 1000
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 999 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 940
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 939 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 880
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 879 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 820
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 819 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 760
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 759 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 700
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 699 gaatacaaaatcctcaatgatgaagtagaa 670
>emb|CQ769015.1| Sequence 19 from Patent WO2004007730
Length = 759
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 705 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 646
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 645 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 586
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 585 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 526
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 525 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 466
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 465 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 406
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 405 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 346
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 345 gaatacaaaatcctcaatgatgaagtagaa 316
>gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 783
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 729 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 670
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 669 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 610
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 609 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 550
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 549 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 490
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 489 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 430
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 429 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 370
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 369 gaatacaaaatcctcaatgatgaagtagaa 340
>ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.2 mRNA, complete
cds
Length = 1063
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 794 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 735
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 734 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 675
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 674 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 615
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 614 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 555
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 554 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 495
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 494 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 435
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 434 gaatacaaaatcctcaatgatgaagtagaa 405
>ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.3 mRNA, complete
cds
Length = 1328
Score = 178 bits (90), Expect = 2e-042
Identities = 315/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 1059 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 1000
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 999 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 940
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 939 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 880
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 879 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 820
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 819 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 760
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || ||||| |||| ||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 759 atgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccccaata 700
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||||| ||||||||||| || ||||||||
Sbjct: 699 gaatacaaaatcctcaatgatgaagtagaa 670
>gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R20187) At1g07420 mRNA,
complete sequence
Length = 1101
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 801 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 742
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 741 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 682
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 681 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 622
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 621 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 562
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 561 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 502
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 501 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 442
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 441 gaagacaaaatcctcaatgataaagtagaa 412
>gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, complete sequence
Length = 1126
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 832 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 773
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 772 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 713
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 712 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 653
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 652 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 593
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 592 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 533
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 532 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 473
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 472 gaagacaaaatcctcaatgataaagtagaa 443
>emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS49ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1318
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 1029 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 970
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 969 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 910
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 909 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 850
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 849 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 790
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 789 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 730
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 729 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 670
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 669 gaagacaaaatcctcaatgataaagtagaa 640
>emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZH05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1051
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 782 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 723
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 722 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 663
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 662 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 603
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 602 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 543
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 542 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 483
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 482 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 423
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 422 gaagacaaaatcctcaatgataaagtagaa 393
>gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence
Length = 543
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 471 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 412
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 411 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 352
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 351 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 292
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 291 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 232
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 231 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 172
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 171 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 112
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 111 gaagacaaaatcctcaatgataaagtagaa 82
>gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 801
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 729 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 670
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 669 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 610
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 609 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 550
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 549 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 490
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 489 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 430
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 429 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 370
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 369 gaagacaaaatcctcaatgataaagtagaa 340
>ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.1 mRNA, complete
cds
Length = 1168
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 832 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 773
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 772 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 713
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 712 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 653
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 652 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 593
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 592 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 533
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 532 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 473
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 472 gaagacaaaatcctcaatgataaagtagaa 443
>ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.2 mRNA, complete
cds
Length = 1365
Score = 155 bits (78), Expect = 2e-035
Identities = 312/390 (80%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 1029 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 970
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 969 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 910
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 909 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 850
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
|| || | || ||||||||||||||||| ||||| || | | || || ||||| ||
Sbjct: 849 gagagtaattaggtgagggccagtaagagctggaccgactatggtagcaaaacccagaaa 790
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
| ||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 789 tagaatctcagcggggtgagcatattctgatgtcaaaccaaatggtgtggcatattcatg 730
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaata 758
|| || || || |||| ||||| |||||||| | |||||| || || ||||||||
Sbjct: 729 atgcacactatgcacgttcttgtacagccattttgaatgcaagatccgatgaccccaata 670
Query: 759 gaatataaaatcctcaaggacaaagtagaa 788
||| | ||||||||||| || |||||||||
Sbjct: 669 gaagacaaaatcctcaatgataaagtagaa 640
>gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109c03F 3', mRNA sequence
Length = 617
Score = 139 bits (70), Expect = 1e-030
Identities = 274/342 (80%)
Strand = Plus / Plus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 270 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 329
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 330 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 389
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||| | ||| || | || |||||| | |||
Sbjct: 390 gaaatgataaccacaatgtgcctcaactgtctcaataactctgagcatcatccataacca 449
Query: 579 cagggtgaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaa 638
||||||| || ||||| || || ||||| |||||||||| | || || || |||||
Sbjct: 450 aagggtgatcaggtgaggcccggtgagagccggaccaacaatggtagcaaaaccaaggaa 509
Query: 639 caaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatg 698
|| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 510 cagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtactcatg 569
Query: 699 gtggacgctgtgaacgtgtttgtatagccatttcgtatgcaa 740
|| || ||||| |||| | ||| |||||||| ||||||||
Sbjct: 570 atgcacactgtgcacgttctcgtagagccatttagtatgcaa 611
>gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, complete sequence
Length = 1091
Score = 131 bits (66), Expect = 3e-028
Identities = 234/290 (80%)
Strand = Plus / Minus
Query: 499 aaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaacc 558
||||| || |||||||||||||| ||||| || | || || ||||||||||| | |||
Sbjct: 702 aaattcgaggggctccatgggaaatgataaccacaatgtgcctcaactgtctcaataact 643
Query: 559 ctcaacaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaaca 618
|| | || |||||| | ||| ||||||| || ||||| || || ||||| |||||||||
Sbjct: 642 ctgagcatcatccataaccaaagggtgatcaggtgaggcccggtgagagccggaccaaca 583
Query: 619 actggggcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaacca 678
| | || || || ||||||| ||||||||| || || |||||||| ||||| ||||||
Sbjct: 582 atggtagcaaaaccaaggaacagaatttcagcgggatgagcatattctgatgtcaaacca 523
Query: 679 aagggtgtggcgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgc 738
|| ||||| ||||||||||| || || ||||| |||| ||||| |||||||| ||||||
Sbjct: 522 aacggtgtcgcgtactcatgatgcacactgtgcacgttcttgtagagccatttagtatgc 463
Query: 739 aatgccctgtgcccccaatagaatataaaatcctcaaggacaaagtagaa 788
|| |||||| ||||||||||||| ||||||||||| || ||||||||
Sbjct: 462 aagatcctgtgaccccaatagaatacaaaatcctcaatgatgaagtagaa 413
Score = 67.9 bits (34), Expect = 4e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 838 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 779
Query: 459 atggtagtcatggaagtc 476
||||||||||||||||||
Sbjct: 778 atggtagtcatggaagtc 761
>ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.1 mRNA, complete
cds
Length = 1104
Score = 131 bits (66), Expect = 3e-028
Identities = 234/290 (80%)
Strand = Plus / Minus
Query: 499 aaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaacc 558
||||| || |||||||||||||| ||||| || | || || ||||||||||| | |||
Sbjct: 702 aaattcgaggggctccatgggaaatgataaccacaatgtgcctcaactgtctcaataact 643
Query: 559 ctcaacaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaaca 618
|| | || |||||| | ||| ||||||| || ||||| || || ||||| |||||||||
Sbjct: 642 ctgagcatcatccataaccaaagggtgatcaggtgaggcccggtgagagccggaccaaca 583
Query: 619 actggggcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaacca 678
| | || || || ||||||| ||||||||| || || |||||||| ||||| ||||||
Sbjct: 582 atggtagcaaaaccaaggaacagaatttcagcgggatgagcatattctgatgtcaaacca 523
Query: 679 aagggtgtggcgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgc 738
|| ||||| ||||||||||| || || ||||| |||| ||||| |||||||| ||||||
Sbjct: 522 aacggtgtcgcgtactcatgatgcacactgtgcacgttcttgtagagccatttagtatgc 463
Query: 739 aatgccctgtgcccccaatagaatataaaatcctcaaggacaaagtagaa 788
|| |||||| ||||||||||||| ||||||||||| || ||||||||
Sbjct: 462 aagatcctgtgaccccaatagaatacaaaatcctcaatgatgaagtagaa 413
Score = 67.9 bits (34), Expect = 4e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 838 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 779
Query: 459 atggtagtcatggaagtc 476
||||||||||||||||||
Sbjct: 778 atggtagtcatggaagtc 761
>emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL12ZC08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 606
Score = 119 bits (60), Expect = 1e-024
Identities = 177/216 (81%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 269 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 210
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 209 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 150
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 149 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 90
Query: 579 cagggtgaagagatgagggccagtaagagcaggacc 614
|| || | || ||||||||||||||||| |||||
Sbjct: 89 gagagtaattaggtgagggccagtaagagctggacc 54
>gb|AI993743.1|AI993743 701497365 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701497365, mRNA sequence
Length = 529
Score = 117 bits (59), Expect = 5e-024
Identities = 131/155 (84%)
Strand = Plus / Minus
Query: 634 aggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtac 693
||||||| ||||||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct: 432 aggaacagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtac 373
Query: 694 tcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccc 753
||||| || || ||||| |||| ||||| |||||||| |||||||| |||||| |||
Sbjct: 372 tcatgatgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccc 313
Query: 754 caatagaatataaaatcctcaaggacaaagtagaa 788
|||||||||| ||||||||||| || ||||||||
Sbjct: 312 caatagaatacaaaatcctcaatgatgaagtagaa 278
>gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL67ZB01 5PRIM, mRNA sequence
Length = 972
Score = 117 bits (59), Expect = 5e-024
Identities = 131/155 (84%)
Strand = Plus / Minus
Query: 634 aggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtac 693
||||||| ||||||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct: 504 aggaacagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtac 445
Query: 694 tcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccc 753
||||| || || ||||| |||| ||||| |||||||| |||||||| |||||| |||
Sbjct: 444 tcatgatgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgaccc 385
Query: 754 caatagaatataaaatcctcaaggacaaagtagaa 788
|||||||||| ||||||||||| || ||||||||
Sbjct: 384 caatagaatacaaaatcctcaatgatgaagtagaa 350
Score = 81.8 bits (41), Expect = 3e-013
Identities = 125/153 (81%)
Strand = Plus / Minus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 739 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 680
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 679 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 620
Query: 519 gaagtgatagccgctgtgagcttcaactgtctc 551
||| ||||| || | || || |||||||||||
Sbjct: 619 gaaatgataaccacaatgtgcctcaactgtctc 587
>gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-12-G17 3',
mRNA sequence
Length = 512
Score = 117 bits (59), Expect = 5e-024
Identities = 176/215 (81%)
Strand = Plus / Plus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 282 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 341
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 342 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 401
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagcca 578
||| ||||| || | || || ||||||||||||| || |||||||||||||| | |||
Sbjct: 402 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatccataacca 461
Query: 579 cagggtgaagagatgagggccagtaagagcaggac 613
|| || | || ||||||||||||||||| ||||
Sbjct: 462 gagagtaattaggtgagggccagtaagagctggac 496
>gb|AV550171.1|AV550171 AV550171 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109c03R 5', mRNA sequence
Length = 555
Score = 115 bits (58), Expect = 2e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 635 ggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtact 694
|||||| ||||||||| || || |||||||| ||||| |||||||| ||||| |||||||
Sbjct: 555 ggaacagaatttcagcgggatgagcatattctgatgtcaaaccaaacggtgtcgcgtact 496
Query: 695 catggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgccccc 754
|||| || || ||||| |||| ||||| |||||||| |||||||| |||||| ||||
Sbjct: 495 catgatgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtgacccc 436
Query: 755 aatagaatataaaatcctcaaggacaaagtagaa 788
||||||||| ||||||||||| || ||||||||
Sbjct: 435 aatagaatacaaaatcctcaatgatgaagtagaa 402
>emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH62ZA10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1051
Score = 107 bits (54), Expect = 5e-021
Identities = 144/174 (82%)
Strand = Plus / Plus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| |||||
Sbjct: 265 ccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggtg 324
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | || |||||||| || || |||||||| ||||||||||
Sbjct: 325 atggtagtcatggaagtcagcacctccatacagaggaagaaaatttgagaggctccatgg 384
Query: 519 gaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacaccatcca 572
||| ||||| || | || || ||||||||||||| || ||||||||||||||
Sbjct: 385 gaaatgataaccacaatgtgcctcaactgtctccagcactctcaacaccatcca 438
Score = 44.1 bits (22), Expect = 0.061
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||| | ||||||||||| || |||||||||
Sbjct: 620 ccccaatagaagacaaaatcctcaatgataaagtagaa 657
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 83.8 bits (42), Expect = 7e-014
Identities = 165/206 (80%)
Strand = Plus / Minus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| || || |||||||| ||||||||||||| ||||| || | || || |||
Sbjct: 2279519 ccatacagaggaagaaaatttgagaggctccatgggaaatgataaccacaatgtgcctca 2279460
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
|||||||||| || |||||||||||||| | ||| || || | || ||||||||||||
Sbjct: 2279459 actgtctccagcactctcaacaccatccataaccagagagtaattaggtgagggccagta 2279400
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
||||| ||||| || | | || || ||||| || | ||| ||||| ||||| ||||||
Sbjct: 2279399 agagctggaccgactatggtagcaaaacccagaaatagaatctcagcggggtgagcatat 2279340
Query: 664 tccgatgttaaaccaaagggtgtggc 689
|| ||||| |||||||| ||||||||
Sbjct: 2279339 tctgatgtcaaaccaaatggtgtggc 2279314
Score = 69.9 bits (35), Expect = 1e-009
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
|||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| ||||
Sbjct: 2279703 accagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggt 2279644
Query: 458 gatggtagtcatggaagtc 476
|||||||||||||||||||
Sbjct: 2279643 gatggtagtcatggaagtc 2279625
Score = 44.1 bits (22), Expect = 0.061
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||| | ||||||||||| || |||||||||
Sbjct: 2279164 ccccaatagaagacaaaatcctcaatgataaagtagaa 2279127
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
complete sequence
Length = 104830
Score = 83.8 bits (42), Expect = 7e-014
Identities = 165/206 (80%)
Strand = Plus / Plus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| || || |||||||| ||||||||||||| ||||| || | || || |||
Sbjct: 64386 ccatacagaggaagaaaatttgagaggctccatgggaaatgataaccacaatgtgcctca 64445
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
|||||||||| || |||||||||||||| | ||| || || | || ||||||||||||
Sbjct: 64446 actgtctccagcactctcaacaccatccataaccagagagtaattaggtgagggccagta 64505
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
||||| ||||| || | | || || ||||| || | ||| ||||| ||||| ||||||
Sbjct: 64506 agagctggaccgactatggtagcaaaacccagaaatagaatctcagcggggtgagcatat 64565
Query: 664 tccgatgttaaaccaaagggtgtggc 689
|| ||||| |||||||| ||||||||
Sbjct: 64566 tctgatgtcaaaccaaatggtgtggc 64591
Score = 69.9 bits (35), Expect = 1e-009
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
|||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| ||||
Sbjct: 64202 accagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggt 64261
Query: 458 gatggtagtcatggaagtc 476
|||||||||||||||||||
Sbjct: 64262 gatggtagtcatggaagtc 64280
Score = 44.1 bits (22), Expect = 0.061
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||| | ||||||||||| || |||||||||
Sbjct: 64741 ccccaatagaagacaaaatcctcaatgataaagtagaa 64778
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 83.8 bits (42), Expect = 7e-014
Identities = 165/206 (80%)
Strand = Plus / Minus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| || || |||||||| ||||||||||||| ||||| || | || || |||
Sbjct: 2279672 ccatacagaggaagaaaatttgagaggctccatgggaaatgataaccacaatgtgcctca 2279613
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
|||||||||| || |||||||||||||| | ||| || || | || ||||||||||||
Sbjct: 2279612 actgtctccagcactctcaacaccatccataaccagagagtaattaggtgagggccagta 2279553
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
||||| ||||| || | | || || ||||| || | ||| ||||| ||||| ||||||
Sbjct: 2279552 agagctggaccgactatggtagcaaaacccagaaatagaatctcagcggggtgagcatat 2279493
Query: 664 tccgatgttaaaccaaagggtgtggc 689
|| ||||| |||||||| ||||||||
Sbjct: 2279492 tctgatgtcaaaccaaatggtgtggc 2279467
Score = 69.9 bits (35), Expect = 1e-009
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
|||||||||| || ||||| ||||| | ||||| || ||||||||||| |||| ||||
Sbjct: 2279856 accagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcggt 2279797
Query: 458 gatggtagtcatggaagtc 476
|||||||||||||||||||
Sbjct: 2279796 gatggtagtcatggaagtc 2279778
Score = 44.1 bits (22), Expect = 0.061
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||| | ||||||||||| || |||||||||
Sbjct: 2279317 ccccaatagaagacaaaatcctcaatgataaagtagaa 2279280
>gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-89-L18 3',
mRNA sequence
Length = 417
Score = 81.8 bits (41), Expect = 3e-013
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 269 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 328
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 329 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 388
Query: 519 gaagtgata 527
||| |||||
Sbjct: 389 gaaatgata 397
>gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-L16 3',
mRNA sequence
Length = 445
Score = 81.8 bits (41), Expect = 3e-013
Identities = 125/153 (81%)
Strand = Plus / Plus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||| || | || ||
Sbjct: 249 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 308
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 309 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 368
Query: 519 gaagtgatagccgctgtgagcttcaactgtctc 551
||| ||||| || | || || |||||||||||
Sbjct: 369 gaaatgataaccacaatgtgcctcaactgtctc 401
>gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-50-O18 3',
mRNA sequence
Length = 434
Score = 81.8 bits (41), Expect = 3e-013
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 399 ccagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtg 458
|||||||||||||||||| ||||| | ||||| || ||||||||||||| | || ||
Sbjct: 268 ccagtccatgtaaacaaacgttgatgagtagttgccacactttgtgtacagtaatcgatg 327
Query: 459 atggtagtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgg 518
|||||||||||||||||| | ||||| || || || || ||||| || |||||||||||
Sbjct: 328 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 387
Query: 519 gaagtgata 527
||| |||||
Sbjct: 388 gaaatgata 396
>gb|AV539858.1|AV539858 AV539858 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ140c12F 3', mRNA sequence
Length = 615
Score = 75.8 bits (38), Expect = 2e-011
Identities = 182/230 (79%)
Strand = Plus / Minus
Query: 559 ctcaacaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaaca 618
|||||||||||||| | ||| || || | || ||||||||||||||||| ||||| ||
Sbjct: 609 ctcaacaccatccataaccagagagtaattaggtgagggccagtaagagctggaccgact 550
Query: 619 actggggcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaacca 678
| | || || ||||| || | ||| ||||| ||||| |||||||| ||||| ||||||
Sbjct: 549 atggtagcaaaacccagaaatagaatctcagcggggtgagcatattctgatgtcaaacca 490
Query: 679 aagggtgtggcgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgc 738
|| |||||||| || ||||| || || || || |||| ||||| |||||||| | ||||
Sbjct: 489 aatggtgtggcatattcatgatgcacactatgcacgttcttgtacagccattttgaatgc 430
Query: 739 aatgccctgtgcccccaatagaatataaaatcctcaaggacaaagtagaa 788
|| || || ||||||||||| | ||||||||||| || |||||||||
Sbjct: 429 aagatccgatgaccccaatagaagacaaaatcctcaatgataaagtagaa 380
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
sequence
Length = 131743
Score = 69.9 bits (35), Expect = 1e-009
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| ||||| | ||||| || ||||||||||| || | || |
Sbjct: 48843 accagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgat 48784
Query: 458 gatggtagtcatggaagtc 476
|||||||||||||||||||
Sbjct: 48783 gatggtagtcatggaagtc 48765
Score = 69.9 bits (35), Expect = 1e-009
Identities = 155/195 (79%)
Strand = Plus / Minus
Query: 499 aaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaacc 558
||||| || |||||||||||||| ||||| || | || || ||||||||||| | |||
Sbjct: 48647 aaattcgaggggctccatgggaaatgataaccacaatgtgcctcaactgtctcaataact 48588
Query: 559 ctcaacaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaaca 618
|| | || |||||| | ||| ||||||| || ||||| || || ||||| |||||||||
Sbjct: 48587 ctgagcatcatccataaccaaagggtgatcaggtgaggcccggtgagagccggaccaaca 48528
Query: 619 actggggcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaacca 678
| | || || || ||||||| ||||||||| || || |||||||| ||||| ||||||
Sbjct: 48527 atggtagcaaaaccaaggaacagaatttcagcgggatgagcatattctgatgtcaaacca 48468
Query: 679 aagggtgtggcgtac 693
|| ||||| ||||||
Sbjct: 48467 aacggtgtcgcgtac 48453
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 691 tactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgc 750
|||||||| || || ||||| |||| ||||| |||||||| |||||||| ||||||
Sbjct: 48360 tactcatgatgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtga 48301
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||||| ||||||||||| || ||||||||
Sbjct: 48300 ccccaatagaatacaaaatcctcaatgatgaagtagaa 48263
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 69.9 bits (35), Expect = 1e-009
Identities = 155/195 (79%)
Strand = Plus / Plus
Query: 499 aaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaacc 558
||||| || |||||||||||||| ||||| || | || || ||||||||||| | |||
Sbjct: 12618168 aaattcgaggggctccatgggaaatgataaccacaatgtgcctcaactgtctcaataact 12618227
Query: 559 ctcaacaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaaca 618
|| | || |||||| | ||| ||||||| || ||||| || || ||||| |||||||||
Sbjct: 12618228 ctgagcatcatccataaccaaagggtgatcaggtgaggcccggtgagagccggaccaaca 12618287
Query: 619 actggggcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaacca 678
| | || || || ||||||| ||||||||| || || |||||||| ||||| ||||||
Sbjct: 12618288 atggtagcaaaaccaaggaacagaatttcagcgggatgagcatattctgatgtcaaacca 12618347
Query: 679 aagggtgtggcgtac 693
|| ||||| ||||||
Sbjct: 12618348 aacggtgtcgcgtac 12618362
Score = 69.9 bits (35), Expect = 1e-009
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| ||||| | ||||| || ||||||||||| || | || |
Sbjct: 12617972 accagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgat 12618031
Query: 458 gatggtagtcatggaagtc 476
|||||||||||||||||||
Sbjct: 12618032 gatggtagtcatggaagtc 12618050
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 691 tactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgc 750
|||||||| || || ||||| |||| ||||| |||||||| |||||||| ||||||
Sbjct: 12618455 tactcatgatgcacactgtgcacgttcttgtagagccatttagtatgcaagatcctgtga 12618514
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||||| ||||||||||| || ||||||||
Sbjct: 12618515 ccccaatagaatacaaaatcctcaatgatgaagtagaa 12618552
>gb|BP581099.1|BP581099 BP581099 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-30-H01 3',
mRNA sequence
Length = 414
Score = 58.0 bits (29), Expect = 4e-006
Identities = 78/92 (84%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 436 gactttgtgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggc 495
||||||||||| |||| ||||||||||||| ||||||||| |||| ||||||| ||
Sbjct: 309 gactttgtgtatagcagtcggtgatggtagt-atggaagtc--agccctcatacagagga 365
Query: 496 aggaaatttgatgggctccatgggaagtgata 527
|| |||||||| ||||||||||||| |||||
Sbjct: 366 agaaaatttgagaggctccatgggaaatgata 397
>gb|CW801524.1|CW801524 WiscDsLox493H10 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 849
Score = 44.1 bits (22), Expect = 0.061
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||| | ||||||||||| || |||||||||
Sbjct: 206 ccccaatagaagacaaaatcctcaatgataaagtagaa 169
>gb|AI993071.1|AI993071 701495233 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701495233, mRNA sequence
Length = 442
Score = 44.1 bits (22), Expect = 0.061
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 751 ccccaatagaatataaaatcctcaaggacaaagtagaa 788
||||||||||| | ||||||||||| || |||||||||
Sbjct: 394 ccccaatagaagacaaaatcctcaatgataaagtagaa 357
>gb|BP652719.1|BP652719 BP652719 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-94-C03 3',
mRNA sequence
Length = 415
Score = 42.1 bits (21), Expect = 0.24
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 436 gactttgtgtacagcacacggtgatggtagtcatggaagtc 476
||||||||||| || | || ||||||||||||||||||||
Sbjct: 299 gactttgtgtagagtaatcgatgatggtagtcatggaagtc 339
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 683,612
Number of Sequences: 1013581
Number of extensions: 683612
Number of successful extensions: 56262
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55319
Number of HSP's gapped (non-prelim): 917
length of query: 1312
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1292
effective length of database: 888,669,252
effective search space: 1148160673584
effective search space used: 1148160673584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)