BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2448637.2.1
         (1190 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BZ288284.1|BZ288284  SALK_021668.36.00.x Arabidopsis thal...    42   0.22 
dbj|AB015479.1|  Arabidopsis thaliana genomic DNA, chromosom...    42   0.22 
dbj|BA000015.5|  Arabidopsis thaliana DNA, chromosome 5, com...    42   0.22 
ref|NM_124922.1|  Arabidopsis thaliana calcium ion binding A...    42   0.22 
ref|NC_003076.4|  Arabidopsis thaliana chromosome 5, complet...    42   0.22 

>gb|BZ288284.1|BZ288284 SALK_021668.36.00.x Arabidopsis thaliana TDNA insertion lines
           Arabidopsis thaliana genomic clone SALK_021668.36.00.x,
           DNA sequence
          Length = 338

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 735 atgcttcaccagctccatctg 755
           |||||||||||||||||||||
Sbjct: 285 atgcttcaccagctccatctg 265



>dbj|AB015479.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTE17
          Length = 80675

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 735   atgcttcaccagctccatctg 755
             |||||||||||||||||||||
Sbjct: 31512 atgcttcaccagctccatctg 31492



>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
          Length = 23810767

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 735      atgcttcaccagctccatctg 755
                |||||||||||||||||||||
Sbjct: 20057110 atgcttcaccagctccatctg 20057090



>ref|NM_124922.1| Arabidopsis thaliana calcium ion binding AT5G55400 mRNA, complete cds
          Length = 2145

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 735  atgcttcaccagctccatctg 755
            |||||||||||||||||||||
Sbjct: 1967 atgcttcaccagctccatctg 1987



>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
          Length = 26992728

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 735      atgcttcaccagctccatctg 755
                |||||||||||||||||||||
Sbjct: 22472939 atgcttcaccagctccatctg 22472919



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 457,386
Number of Sequences: 1013581
Number of extensions: 457386
Number of successful extensions: 28956
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28673
Number of HSP's gapped (non-prelim): 283
length of query: 1190
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1170
effective length of database: 888,669,252
effective search space: 1039743024840
effective search space used: 1039743024840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)