BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV523848.1|AV523848 AV523848 Arabidopsis thaliana aboveg... 48 0.002
gb|AV567337.1|AV567337 AV567337 Arabidopsis thaliana green ... 48 0.002
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.002
gb|AC011809.2| Arabidopsis thaliana chromosome I BAC F6A14 ... 48 0.002
dbj|AK175316.1| Arabidopsis thaliana mRNA for hypothetical ... 48 0.002
ref|NM_101727.1| Arabidopsis thaliana transferase/ transfer... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
gb|BX834253.1|BX834253 BX834253 Arabidopsis thaliana Adult ... 42 0.12
gb|BP665076.1|BP665076 BP665076 RAFL21 Arabidopsis thaliana... 42 0.12
gb|BP797816.1|BP797816 BP797816 RAFL14 Arabidopsis thaliana... 42 0.12
emb|AJ245571.1|ATH245571 Arabidopsis thaliana mRNA for puta... 42 0.12
emb|AJ245573.1|ATH245573 Arabidopsis thaliana mRNA for puta... 42 0.12
gb|AY057598.1| Arabidopsis thaliana AT4g02500/T10P11_20 mRN... 42 0.12
gb|AY140029.1| Arabidopsis thaliana putative glycosyltransf... 42 0.12
gb|BT006601.1| Arabidopsis thaliana At4g02500 mRNA, complet... 42 0.12
gb|BT010365.1| Arabidopsis thaliana At5g07720 mRNA, complet... 42 0.12
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 42 0.12
dbj|AB010070.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.12
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.12
gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8 42 0.12
emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome... 42 0.12
gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromos... 42 0.12
ref|NM_116484.2| Arabidopsis thaliana transferase/ transfer... 42 0.12
ref|NM_120854.2| Arabidopsis thaliana transferase/ transfer... 42 0.12
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.12
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.12
gb|AV805008.1|AV805008 AV805008 RAFL9 Arabidopsis thaliana ... 40 0.48
>gb|AV523848.1|AV523848 AV523848 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL41f02F 3', mRNA
sequence
Length = 601
Score = 48.1 bits (24), Expect = 0.002
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
||||||||||| || | |||||||||| ||| ||| | || |||| |||||| |||||
Sbjct: 335 gcaaaattaaaagccctctccatgctcttgaagcatctatcgactgcgtaatcagcatag 394
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggcca 526
|| ||||| || |||||||| ||||| || ||||| || |||||
Sbjct: 395 ctgccacacggtttgcaccctacaaaatgtgtcacaaagggcca 438
>gb|AV567337.1|AV567337 AV567337 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL11e08F 3', mRNA sequence
Length = 542
Score = 48.1 bits (24), Expect = 0.002
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
||||||||||| || | |||||||||| ||| ||| | || |||| |||||| |||||
Sbjct: 375 gcaaaattaaaagccctctccatgctcttgaagcatctatcgactgcgtaatcagcatag 434
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggcca 526
|| ||||| || |||||||| ||||| || ||||| || |||||
Sbjct: 435 ctgccacacggtttgcaccctacaaaatgtgtcacaaagggcca 478
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.002
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
||||||||||| || | |||||||||| ||| ||| | || |||| |||||| |||||
Sbjct: 6436362 gcaaaattaaaagccctctccatgctcttgaagcatctatcgactgcgtaatcagcatag 6436303
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggcca 526
|| ||||| || |||||||| ||||| || ||||| || |||||
Sbjct: 6436302 ctgccacacggtttgcaccctacaaaatgtgtcacaaagggcca 6436259
>gb|AC011809.2| Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete
sequence
Length = 108767
Score = 48.1 bits (24), Expect = 0.002
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
||||||||||| || | |||||||||| ||| ||| | || |||| |||||| |||||
Sbjct: 93323 gcaaaattaaaagccctctccatgctcttgaagcatctatcgactgcgtaatcagcatag 93382
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggcca 526
|| ||||| || |||||||| ||||| || ||||| || |||||
Sbjct: 93383 ctgccacacggtttgcaccctacaaaatgtgtcacaaagggcca 93426
>dbj|AK175316.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
clone: RAFL21-75-L22
Length = 2280
Score = 48.1 bits (24), Expect = 0.002
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
||||||||||| || | |||||||||| ||| ||| | || |||| |||||| |||||
Sbjct: 1896 gcaaaattaaaagccctctccatgctcttgaagcatctatcgactgcgtaatcagcatag 1837
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggcca 526
|| ||||| || |||||||| ||||| || ||||| || |||||
Sbjct: 1836 ctgccacacggtttgcaccctacaaaatgtgtcacaaagggcca 1793
>ref|NM_101727.1| Arabidopsis thaliana transferase/ transferase, transferring glycosyl
groups AT1G18690 mRNA, complete cds
Length = 2125
Score = 48.1 bits (24), Expect = 0.002
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
||||||||||| || | |||||||||| ||| ||| | || |||| |||||| |||||
Sbjct: 1751 gcaaaattaaaagccctctccatgctcttgaagcatctatcgactgcgtaatcagcatag 1692
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggcca 526
|| ||||| || |||||||| ||||| || ||||| || |||||
Sbjct: 1691 ctgccacacggtttgcaccctacaaaatgtgtcacaaagggcca 1648
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
||||||||||| || | |||||||||| ||| ||| | || |||| |||||| |||||
Sbjct: 6436538 gcaaaattaaaagccctctccatgctcttgaagcatctatcgactgcgtaatcagcatag 6436479
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggcca 526
|| ||||| || |||||||| ||||| || ||||| || |||||
Sbjct: 6436478 ctgccacacggtttgcaccctacaaaatgtgtcacaaagggcca 6436435
>gb|BX834253.1|BX834253 BX834253 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS20ZC05 3PRIM, mRNA
sequence
Length = 789
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 427 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 486
Query: 522 ggcca 526
|||||
Sbjct: 487 ggcca 491
>gb|BP665076.1|BP665076 BP665076 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-15-A09 3',
mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 335 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 394
Query: 522 ggcca 526
|||||
Sbjct: 395 ggcca 399
>gb|BP797816.1|BP797816 BP797816 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-04-P12 5',
mRNA sequence
Length = 377
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 270 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 211
Query: 522 ggcca 526
|||||
Sbjct: 210 ggcca 206
>emb|AJ245571.1|ATH245571 Arabidopsis thaliana mRNA for putative golgi glycosyltransferase,
(gt15 gene)
Length = 1470
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 1262 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 1203
Query: 522 ggcca 526
|||||
Sbjct: 1202 ggcca 1198
>emb|AJ245573.1|ATH245573 Arabidopsis thaliana mRNA for putative golgi glycosyltransferase
(gt17 gene)
Length = 1416
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 478 catagctcccacatggcttgcacccaacaaagtgagt 514
|||| |||||||| || ||||| ||||||||||||||
Sbjct: 1194 cataactcccacacggtttgcatccaacaaagtgagt 1158
Score = 40.1 bits (20), Expect = 0.48
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 555 ttctccatcatctnntcatacttatc 580
||||||||||||| |||||||||||
Sbjct: 1117 ttctccatcatctcctcatacttatc 1092
>gb|AY057598.1| Arabidopsis thaliana AT4g02500/T10P11_20 mRNA, complete cds
Length = 1581
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 1196 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 1137
Query: 522 ggcca 526
|||||
Sbjct: 1136 ggcca 1132
>gb|AY140029.1| Arabidopsis thaliana putative glycosyltransferase (At4g02500) mRNA,
complete cds
Length = 1782
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 1312 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 1253
Query: 522 ggcca 526
|||||
Sbjct: 1252 ggcca 1248
>gb|BT006601.1| Arabidopsis thaliana At4g02500 mRNA, complete cds
Length = 1386
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 1181 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 1122
Query: 522 ggcca 526
|||||
Sbjct: 1121 ggcca 1117
>gb|BT010365.1| Arabidopsis thaliana At5g07720 mRNA, complete cds
Length = 1374
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 478 catagctcccacatggcttgcacccaacaaagtgagt 514
|||| |||||||| || ||||| ||||||||||||||
Sbjct: 1162 cataactcccacacggtttgcatccaacaaagtgagt 1126
Score = 40.1 bits (20), Expect = 0.48
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 555 ttctccatcatctnntcatacttatc 580
||||||||||||| |||||||||||
Sbjct: 1085 ttctccatcatctcctcatacttatc 1060
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 1101951 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 1101892
Query: 522 ggcca 526
|||||
Sbjct: 1101891 ggcca 1101887
>dbj|AB010070.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK20
Length = 78172
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 478 catagctcccacatggcttgcacccaacaaagtgagt 514
|||| |||||||| || ||||| ||||||||||||||
Sbjct: 57406 cataactcccacacggtttgcatccaacaaagtgagt 57370
Score = 40.1 bits (20), Expect = 0.48
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 555 ttctccatcatctnntcatacttatc 580
||||||||||||| |||||||||||
Sbjct: 57329 ttctccatcatctcctcatacttatc 57304
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 478 catagctcccacatggcttgcacccaacaaagtgagt 514
|||| |||||||| || ||||| ||||||||||||||
Sbjct: 2285956 cataactcccacacggtttgcatccaacaaagtgagt 2285920
Score = 40.1 bits (20), Expect = 0.48
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 555 ttctccatcatctnntcatacttatc 580
||||||||||||| |||||||||||
Sbjct: 2285879 ttctccatcatctcctcatacttatc 2285854
>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8
Length = 94536
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 7824 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 7883
Query: 522 ggcca 526
|||||
Sbjct: 7884 ggcca 7888
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
Length = 194892
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 138791 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 138732
Query: 522 ggcca 526
|||||
Sbjct: 138731 ggcca 138727
>gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM, complete
sequence
Length = 113566
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 107954 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 108013
Query: 522 ggcca 526
|||||
Sbjct: 108014 ggcca 108018
>ref|NM_116484.2| Arabidopsis thaliana transferase/ transferase, transferring glycosyl
groups AT4G02500 mRNA, complete cds
Length = 1782
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 1312 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 1253
Query: 522 ggcca 526
|||||
Sbjct: 1252 ggcca 1248
>ref|NM_120854.2| Arabidopsis thaliana transferase/ transferase, transferring glycosyl
groups AT5G07720 mRNA, complete cds
Length = 1683
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 478 catagctcccacatggcttgcacccaacaaagtgagt 514
|||| |||||||| || ||||| ||||||||||||||
Sbjct: 1285 cataactcccacacggtttgcatccaacaaagtgagt 1249
Score = 40.1 bits (20), Expect = 0.48
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 555 ttctccatcatctnntcatacttatc 580
||||||||||||| |||||||||||
Sbjct: 1208 ttctccatcatctcctcatacttatc 1183
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.12
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||||| |||||||| ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct: 1103140 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcaccaat 1103081
Query: 522 ggcca 526
|||||
Sbjct: 1103080 ggcca 1103076
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 478 catagctcccacatggcttgcacccaacaaagtgagt 514
|||| |||||||| || ||||| ||||||||||||||
Sbjct: 2456919 cataactcccacacggtttgcatccaacaaagtgagt 2456883
Score = 40.1 bits (20), Expect = 0.48
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 555 ttctccatcatctnntcatacttatc 580
||||||||||||| |||||||||||
Sbjct: 2456842 ttctccatcatctcctcatacttatc 2456817
>gb|AV805008.1|AV805008 AV805008 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-41-F24 3',
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.48
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcac 517
||||| |||||||| ||| | ||||||| || ||||| || ||||||||||||||
Sbjct: 336 tccaccgggtaatcaccaaatttcccacacggtttgcaaccgacaaagtgagtcac 391
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 258,829
Number of Sequences: 1013581
Number of extensions: 258829
Number of successful extensions: 18222
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17578
Number of HSP's gapped (non-prelim): 644
length of query: 677
length of database: 908,940,872
effective HSP length: 20
effective length of query: 657
effective length of database: 888,669,252
effective search space: 583855698564
effective search space used: 583855698564
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)