BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX835429.1|BX835429 BX835429 Arabidopsis thaliana Adult ... 46 0.021
gb|DR749696.1|DR749696 40-L022591-065-012-H02-SeLB MPIZ-ADI... 46 0.021
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 46 0.021
gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, com... 46 0.021
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 46 0.021
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 46 0.021
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 46 0.021
emb|AX506835.1| Sequence 1530 from Patent WO0216655 46 0.021
emb|AX651787.1| Sequence 640 from Patent WO03000898 46 0.021
gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 m... 46 0.021
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 46 0.021
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.021
gb|CL483062.1|CL483062 SAIL_374_F02.v1 SAIL Collection Arab... 44 0.083
gb|AF013466.1|AF013466 Arabidopsis thaliana auxin response ... 42 0.33
gb|AF344313.1| Arabidopsis thaliana auxin response factor 4... 42 0.33
gb|AY080832.1| Arabidopsis thaliana auxin response factor A... 42 0.33
gb|AY113977.1| Arabidopsis thaliana auxin response factor A... 42 0.33
gb|BV007495.1| MASC_STS13153 Arabidopsis thaliana (Eifel-2 ... 42 0.33
gb|BV011433.1| MASC_STS13152 Arabidopsis thaliana (C24 acce... 42 0.33
gb|BV011549.1| MASC_STS13151 Arabidopsis thaliana (Lezoux/P... 42 0.33
gb|BV011550.1| MASC_STS13156 Arabidopsis thaliana (Yosemite... 42 0.33
gb|BV011551.1| MASC_STS13150 Arabidopsis thaliana (Wassilew... 42 0.33
gb|BV011552.1| MASC_STS13148 Arabidopsis thaliana (Niederze... 42 0.33
gb|BV011553.1| MASC_STS13149 Arabidopsis thaliana (Guecking... 42 0.33
gb|BV011554.1| MASC_STS13155 Arabidopsis thaliana (Weininge... 42 0.33
gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis tha... 42 0.33
dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.33
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.33
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.33
ref|NM_125438.2| Arabidopsis thaliana ARF4 (AUXIN RESPONSE ... 42 0.33
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.33
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.33
>gb|BX835429.1|BX835429 BX835429 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS95ZC10 3PRIM, mRNA
sequence
Length = 821
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 510 ttcttgaccttgcaagaccttatggaa 536
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 510 ttcttgaccttgcaagaccttatggaa 536
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 630 ttcttgaccttgcaagaccctctggaatct 659
>gb|DR749696.1|DR749696 40-L022591-065-012-H02-SeLB MPIZ-ADIS-065b Arabidopsis thaliana cDNA
clone 012-H02, mRNA sequence
Length = 767
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 536 ttcttgaccttgcaagaccttatggaa 562
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 536 ttcttgaccttgcaagaccttatggaa 562
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 656 ttcttgaccttgcaagaccctctggaatct 685
>gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response transcription factor 3 (ARF3)
mRNA, complete cds
Length = 2124
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 1607 ttcttgaccttgcaagaccttatggaa 1581
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 1607 ttcttgaccttgcaagaccttatggaa 1581
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 1487 ttcttgaccttgcaagaccctctggaatct 1458
>gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, complete cds
Length = 4054
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 3243 ttcttgaccttgcaagaccttatggaa 3217
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 3243 ttcttgaccttgcaagaccttatggaa 3217
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 3123 ttcttgaccttgcaagaccctctggaatct 3094
>gb|AF336917.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1827
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 1329 ttcttgaccttgcaagaccctctggaatct 1300
>gb|AF360313.1| Arabidopsis thaliana auxin response transcription factor 3
(ETTIN/ARF3) (At2g33860) mRNA, complete cds
Length = 2114
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 1547 ttcttgaccttgcaagaccttatggaa 1521
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 1547 ttcttgaccttgcaagaccttatggaa 1521
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 1427 ttcttgaccttgcaagaccctctggaatct 1398
>gb|AY056365.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1858
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 1329 ttcttgaccttgcaagaccctctggaatct 1300
>emb|AX506835.1| Sequence 1530 from Patent WO0216655
Length = 1827
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 1329 ttcttgaccttgcaagaccctctggaatct 1300
>emb|AX651787.1| Sequence 640 from Patent WO03000898
Length = 1827
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 1449 ttcttgaccttgcaagaccttatggaa 1423
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 1329 ttcttgaccttgcaagaccctctggaatct 1300
>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete
sequence
Length = 114144
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 78874 ttcttgaccttgcaagaccttatggaa 78900
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 78874 ttcttgaccttgcaagaccttatggaa 78900
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 78994 ttcttgaccttgcaagaccctctggaatct 79023
>ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcription factor AT2G33860
(ETT) mRNA, complete cds
Length = 2160
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 1607 ttcttgaccttgcaagaccttatggaa 1581
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 1607 ttcttgaccttgcaagaccttatggaa 1581
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 1487 ttcttgaccttgcaagaccctctggaatct 1458
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||
Sbjct: 14332898 ttcttgaccttgcaagaccttatggaa 14332924
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaa 997
||||||||||||||||||||| |||||
Sbjct: 14332898 ttcttgaccttgcaagaccttatggaa 14332924
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||| | ||||||||
Sbjct: 14333018 ttcttgaccttgcaagaccctctggaatct 14333047
>gb|CL483062.1|CL483062 SAIL_374_F02.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_374_F02.v1, DNA sequence
Length = 1005
Score = 44.1 bits (22), Expect = 0.083
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1577 gataaacttcgaaaatggtata 1598
||||||||||||||||||||||
Sbjct: 344 gataaacttcgaaaatggtata 323
>gb|AF013466.1|AF013466 Arabidopsis thaliana auxin response factor 4 (ARF4) mRNA, complete
cds
Length = 2675
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 1438 ttcttgaccttgcaagacctt 1418
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 1438 ttcttgaccttgcaagacctt 1418
>gb|AF344313.1| Arabidopsis thaliana auxin response factor 4 (At5g60450) mRNA,
complete cds
Length = 2367
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 1383 ttcttgaccttgcaagacctt 1363
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 1383 ttcttgaccttgcaagacctt 1363
>gb|AY080832.1| Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA,
complete cds
Length = 2974
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 1740 ttcttgaccttgcaagacctt 1720
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 1740 ttcttgaccttgcaagacctt 1720
>gb|AY113977.1| Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA,
complete cds
Length = 2398
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 1383 ttcttgaccttgcaagacctt 1363
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 1383 ttcttgaccttgcaagacctt 1363
>gb|BV007495.1| MASC_STS13153 Arabidopsis thaliana (Eifel-2 accession) genomic DNA
Arabidopsis thaliana STS genomic, sequence tagged site
Length = 403
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 97 aaacttcgaaaatggtataat 117
>gb|BV011433.1| MASC_STS13152 Arabidopsis thaliana (C24 accession) genomic DNA
Arabidopsis thaliana STS genomic, sequence tagged site
Length = 401
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 307 aaacttcgaaaatggtataat 287
>gb|BV011549.1| MASC_STS13151 Arabidopsis thaliana (Lezoux/Puy-de-Dome-0 accession)
genomic DNA Arabidopsis thaliana STS genomic, sequence
tagged site
Length = 436
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 142 aaacttcgaaaatggtataat 162
>gb|BV011550.1| MASC_STS13156 Arabidopsis thaliana (Yosemite-0 accession) genomic DNA
Arabidopsis thaliana STS genomic, sequence tagged site
Length = 390
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 295 aaacttcgaaaatggtataat 275
>gb|BV011551.1| MASC_STS13150 Arabidopsis thaliana (Wassilewskija-0 accession)
genomic DNA Arabidopsis thaliana STS genomic, sequence
tagged site
Length = 438
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 295 aaacttcgaaaatggtataat 275
>gb|BV011552.1| MASC_STS13148 Arabidopsis thaliana (Niederzenz-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 440
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 313 aaacttcgaaaatggtataat 293
>gb|BV011553.1| MASC_STS13149 Arabidopsis thaliana (Gueckingen-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 433
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 302 aaacttcgaaaatggtataat 282
>gb|BV011554.1| MASC_STS13155 Arabidopsis thaliana (Weiningen-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 433
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 307 aaacttcgaaaatggtataat 287
>gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I,
complete sequence
Length = 109171
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 17144 aaacttcgaaaatggtataat 17164
>dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9
Length = 77298
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 30218 ttcttgaccttgcaagacctt 30238
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 30218 ttcttgaccttgcaagacctt 30238
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 21595031 ttcttgaccttgcaagacctt 21595051
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 21595031 ttcttgaccttgcaagacctt 21595051
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1580 aaacttcgaaaatggtataat 1600
|||||||||||||||||||||
Sbjct: 5138445 aaacttcgaaaatggtataat 5138465
>ref|NM_125438.2| Arabidopsis thaliana ARF4 (AUXIN RESPONSE FACTOR 4); transcription
factor AT5G60450 (ARF4) mRNA, complete cds
Length = 3113
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 1894 ttcttgaccttgcaagacctt 1874
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 1894 ttcttgaccttgcaagacctt 1874
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 24326944 ttcttgaccttgcaagacctt 24326964
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagacctt 991
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Sbjct: 24326944 ttcttgaccttgcaagacctt 24326964
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1580 aaacttcgaaaatggtataat 1600
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Sbjct: 20782675 aaacttcgaaaatggtataat 20782695
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 826,086
Number of Sequences: 1013581
Number of extensions: 826086
Number of successful extensions: 55957
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54363
Number of HSP's gapped (non-prelim): 1594
length of query: 1796
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1775
effective length of database: 887,655,671
effective search space: 1575588816025
effective search space used: 1575588816025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)