BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.2
(962 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX832658.1|CNS0A1X5 Arabidopsis thaliana Full-length cD... 66 1e-008
gb|AA042324.1|AA042324 24661 CD4-13 Arabidopsis thaliana cD... 64 5e-008
gb|T22183.1|T22183 4191 Lambda-PRL2 Arabidopsis thaliana cD... 64 5e-008
gb|N96152.1|N96152 21848 Lambda-PRL1 Arabidopsis thaliana c... 64 5e-008
gb|BE037951.1|BE037951 AA06H06 AA Arabidopsis thaliana cDNA... 64 5e-008
gb|AV832232.1|AV832232 AV832232 RAFL11 Arabidopsis thaliana... 64 5e-008
gb|CB258492.1|CB258492 04-E012733-014-002-G10-T7R MPIZ-ADIS... 64 5e-008
gb|CD529157.1|CD529157 01O13 Arabidopsis Leaf Senescence Li... 64 5e-008
gb|CD532604.1|CD532604 28B11 Arabidopsis Leaf Senescence Li... 64 5e-008
gb|CB253667.1|CB253667 91-E018429-019-008-F23-T7R MPIZ-ADIS... 64 5e-008
gb|BP797644.1|BP797644 BP797644 RAFL14 Arabidopsis thaliana... 64 5e-008
gb|BP821475.1|BP821475 BP821475 RAFL19 Arabidopsis thaliana... 64 5e-008
gb|BP824131.1|BP824131 BP824131 RAFL19 Arabidopsis thaliana... 64 5e-008
gb|AY120735.1| Arabidopsis thaliana 1,4-benzoquinone reduct... 64 5e-008
gb|BT002194.1| Arabidopsis thaliana 1,4-benzoquinone reduct... 64 5e-008
ref|NM_124830.3| Arabidopsis thaliana FQR1 (FLAVODOXIN-LIKE... 64 5e-008
gb|T22407.1|T22407 4415 Lambda-PRL2 Arabidopsis thaliana cD... 58 3e-006
dbj|AB026634.1| Arabidopsis thaliana genomic DNA, chromosom... 58 3e-006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 58 3e-006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 58 3e-006
gb|BP844466.1|BP844466 BP844466 RAFL21 Arabidopsis thaliana... 56 1e-005
gb|BP844692.1|BP844692 BP844692 RAFL21 Arabidopsis thaliana... 56 1e-005
gb|BP857659.1|BP857659 BP857659 RAFL21 Arabidopsis thaliana... 56 1e-005
gb|BP863536.1|BP863536 BP863536 RAFL21 Arabidopsis thaliana... 56 1e-005
gb|CD530666.1|CD530666 07F01 Arabidopsis Leaf Senescence Li... 54 5e-005
gb|BP797061.1|BP797061 BP797061 RAFL14 Arabidopsis thaliana... 54 5e-005
gb|BP833347.1|BP833347 BP833347 RAFL19 Arabidopsis thaliana... 54 5e-005
gb|T46539.1|T46539 9802 Lambda-PRL2 Arabidopsis thaliana cD... 52 2e-004
gb|BP848283.1|BP848283 BP848283 RAFL21 Arabidopsis thaliana... 50 7e-004
gb|BP862932.1|BP862932 BP862932 RAFL21 Arabidopsis thaliana... 50 7e-004
gb|R65249.1|R65249 13753 Lambda-PRL2 Arabidopsis thaliana c... 48 0.003
gb|BP797523.1|BP797523 BP797523 RAFL14 Arabidopsis thaliana... 48 0.003
gb|BP800007.1|BP800007 BP800007 RAFL14 Arabidopsis thaliana... 48 0.003
gb|BP823749.1|BP823749 BP823749 RAFL19 Arabidopsis thaliana... 48 0.003
gb|BP866904.1|BP866904 BP866904 RAFL21 Arabidopsis thaliana... 48 0.003
gb|BP868173.1|BP868173 BP868173 RAFL21 Arabidopsis thaliana... 48 0.003
gb|AV553406.1|AV553406 AV553406 Arabidopsis thaliana roots ... 46 0.011
gb|BP801145.1|BP801145 BP801145 RAFL14 Arabidopsis thaliana... 46 0.011
gb|BP806303.1|BP806303 BP806303 RAFL16 Arabidopsis thaliana... 46 0.011
gb|BP813450.1|BP813450 BP813450 RAFL19 Arabidopsis thaliana... 46 0.011
gb|BT010514.1| Arabidopsis thaliana At4g27270 gene, complet... 46 0.011
dbj|AK221196.1| Arabidopsis thaliana mRNA for putative prot... 46 0.011
ref|NM_118861.3| Arabidopsis thaliana FMN binding / oxidore... 46 0.011
gb|AV544869.1|AV544869 AV544869 Arabidopsis thaliana roots ... 44 0.044
gb|CF773233.1|CF773233 AG_FSL_14E12 Arabidopsis ag-1 35S:AG... 44 0.044
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.044
emb|AL030978.1|ATM4I22 Arabidopsis thaliana DNA chromosome ... 44 0.044
emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosom... 44 0.044
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.044
gb|CF652841.1|CF652841 80-L020164-066-001-O20-SP6P MPIZ-ADI... 42 0.17
>emb|BX832658.1|CNS0A1X5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH87ZD12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1243
Score = 65.9 bits (33), Expect = 1e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 717 gacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttc 776
|||||||||| |||||||||||||||||||||||| | || |||||| || |||||
Sbjct: 122 gacctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttc 63
Query: 777 agctagtttgccaacatgtccatacatggaatagtacacga 817
||| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 62 agccaatttctcaacatgaccatacatagagtagtacacga 22
>gb|AA042324.1|AA042324 24661 CD4-13 Arabidopsis thaliana cDNA clone E6D6T7, mRNA sequence
Length = 526
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 176 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 117
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 116 gccaatttctcaacatgaccatacatagagtagtacacga 77
>gb|T22183.1|T22183 4191 Lambda-PRL2 Arabidopsis thaliana cDNA clone 98J23T7, mRNA
sequence
Length = 501
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 173 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 114
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 113 gccaatttctcaacatgaccatacatagagtagtacacga 74
>gb|N96152.1|N96152 21848 Lambda-PRL1 Arabidopsis thaliana cDNA clone G7B11T7, mRNA
sequence
Length = 503
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 142 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 83
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 82 gccaatttctcaacatgaccatacatagagtagtacacga 43
>gb|BE037951.1|BE037951 AA06H06 AA Arabidopsis thaliana cDNA 5', mRNA sequence
Length = 691
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 173 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 114
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 113 gccaatttctcaacatgaccatacatagagtagtacacga 74
>gb|AV832232.1|AV832232 AV832232 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-06-N14 5',
mRNA sequence
Length = 614
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 208 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 149
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 148 gccaatttctcaacatgaccatacatagagtagtacacga 109
>gb|CB258492.1|CB258492 04-E012733-014-002-G10-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771G102Q 5-PRIME, mRNA sequence
Length = 655
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 165 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 106
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 105 gccaatttctcaacatgaccatacatagagtagtacacga 66
>gb|CD529157.1|CD529157 01O13 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 360
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 115 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 56
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 55 gccaatttctcaacatgaccatacatagagtagtacacga 16
>gb|CD532604.1|CD532604 28B11 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 465
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 170 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 111
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 110 gccaatttctcaacatgaccatacatagagtagtacacga 71
>gb|CB253667.1|CB253667 91-E018429-019-008-F23-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768F238Q 5-PRIME, mRNA sequence
Length = 600
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 160 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 101
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 100 gccaatttctcaacatgaccatacatagagtagtacacga 61
>gb|BP797644.1|BP797644 BP797644 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-04-C13 5',
mRNA sequence
Length = 383
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 128 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 69
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 68 gccaatttctcaacatgaccatacatagagtagtacacga 29
>gb|BP821475.1|BP821475 BP821475 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-58-D03 5',
mRNA sequence
Length = 388
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 198 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 139
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 138 gccaatttctcaacatgaccatacatagagtagtacacga 99
>gb|BP824131.1|BP824131 BP824131 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-08-J22 5',
mRNA sequence
Length = 379
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 205 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 146
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 145 gccaatttctcaacatgaccatacatagagtagtacacga 106
>gb|AY120735.1| Arabidopsis thaliana 1,4-benzoquinone reductase-like protein
(At5g54500) mRNA, complete cds
Length = 913
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 208 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 149
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 148 gccaatttctcaacatgaccatacatagagtagtacacga 109
>gb|BT002194.1| Arabidopsis thaliana 1,4-benzoquinone reductase-like protein
(At5g54500) mRNA, complete cds
Length = 726
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 119 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 60
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 59 gccaatttctcaacatgaccatacatagagtagtacacga 20
>ref|NM_124830.3| Arabidopsis thaliana FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)
AT5G54500 (FQR1) mRNA, complete cds
Length = 952
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 208 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 149
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 148 gccaatttctcaacatgaccatacatagagtagtacacga 109
>gb|T22407.1|T22407 4415 Lambda-PRL2 Arabidopsis thaliana cDNA clone 105A17T7, mRNA
sequence
Length = 338
Score = 58.0 bits (29), Expect = 3e-006
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||| ||| | || |||||| || ||||||
Sbjct: 171 acctgccatagtttagcttcaacaccttcaanagaagcagctcctttccttatttcttca 112
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 111 gccaatttctcaacatgaccatacatagagtagtacacga 72
>dbj|AB026634.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F24B18
Length = 50524
Score = 58.0 bits (29), Expect = 3e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 717 gacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttc 776
|||||||||| |||||||||||||||||||||||| | || |||||| || |||||
Sbjct: 41597 gacctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttc 41538
Query: 777 agctagtttgccaacatgtccatacatggaatagtac 813
||| | ||| ||||||| |||||||| || ||||||
Sbjct: 41537 agccaatttctcaacatgaccatacatagagtagtac 41501
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 58.0 bits (29), Expect = 3e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 717 gacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttc 776
|||||||||| |||||||||||||||||||||||| | || |||||| || |||||
Sbjct: 19786545 gacctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttc 19786486
Query: 777 agctagtttgccaacatgtccatacatggaatagtac 813
||| | ||| ||||||| |||||||| || ||||||
Sbjct: 19786485 agccaatttctcaacatgaccatacatagagtagtac 19786449
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 58.0 bits (29), Expect = 3e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 717 gacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttc 776
|||||||||| |||||||||||||||||||||||| | || |||||| || |||||
Sbjct: 22142374 gacctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttc 22142315
Query: 777 agctagtttgccaacatgtccatacatggaatagtac 813
||| | ||| ||||||| |||||||| || ||||||
Sbjct: 22142314 agccaatttctcaacatgaccatacatagagtagtac 22142278
>gb|BP844466.1|BP844466 BP844466 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-90-H21 5',
mRNA sequence
Length = 411
Score = 56.0 bits (28), Expect = 1e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||| ||||| | || |||||| || ||||||
Sbjct: 205 acctgccatagtttagcttcaacaccttccacagaagcagctcctttccttatttcttca 146
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 145 gccaatttctcaacatgaccatacatagagtagtacacga 106
>gb|BP844692.1|BP844692 BP844692 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-91-D18 5',
mRNA sequence
Length = 404
Score = 56.0 bits (28), Expect = 1e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 205 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 146
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| ||| ||||||| |||||||| || ||||||||||
Sbjct: 145 gcccatttctcaacatgaccatacatagagtagtacacga 106
>gb|BP857659.1|BP857659 BP857659 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-34-F10 5',
mRNA sequence
Length = 365
Score = 56.0 bits (28), Expect = 1e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct: 199 acctgccatagtttagcttcaacaccttcaacagaagcagctcctttccttatttcttca 140
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| | ||||| |||||||| || ||||||||||
Sbjct: 139 gccaatttctccacatgaccatacatagagtagtacacga 100
>gb|BP863536.1|BP863536 BP863536 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-67-B13 5',
mRNA sequence
Length = 401
Score = 56.0 bits (28), Expect = 1e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||| ||||| | || |||||| || ||||||
Sbjct: 205 acctgccatagtttagcttcaacaccttcgacagaagcagctcctttccttatttcttca 146
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| | ||| ||||||| |||||||| || ||||||||||
Sbjct: 145 gccaatttctcaacatgaccatacatagagtagtacacga 106
>gb|CD530666.1|CD530666 07F01 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 329
Score = 54.0 bits (27), Expect = 5e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacaga 752
||||||||| ||||||||||||||||||||||||
Sbjct: 180 acctgccatagtttagcttcaacaccttcaacaga 146
>gb|BP797061.1|BP797061 BP797061 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-01-P13 5',
mRNA sequence
Length = 399
Score = 54.0 bits (27), Expect = 5e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 155 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 96
Query: 793 tgtccatacatggaatagtacac 815
|| |||||||| |||||||||||
Sbjct: 95 tgaccatacattgaatagtacac 73
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 308 gccatcataccaaacctcgttgggaagccgaaga 275
>gb|BP833347.1|BP833347 BP833347 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-95-M19 5',
mRNA sequence
Length = 381
Score = 54.0 bits (27), Expect = 5e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacaga 752
||||||||| ||||||||||||||||||||||||
Sbjct: 198 acctgccatagtttagcttcaacaccttcaacaga 164
>gb|T46539.1|T46539 9802 Lambda-PRL2 Arabidopsis thaliana cDNA clone 135C19T7, mRNA
sequence
Length = 357
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||||| ||| | || |||||| || ||||||
Sbjct: 176 acctgccatagtttagcttcaacaccttcaaaagaagcagctcctttccttatttcttca 117
Query: 778 gctagtttgccaacatgtccatacatggaatagtacac 815
|| | ||| ||||||| |||||||| || ||||||||
Sbjct: 116 gccaatttctcaacatgaccatacatagagtagtacac 79
>gb|BP848283.1|BP848283 BP848283 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-04-N11 5',
mRNA sequence
Length = 380
Score = 50.1 bits (25), Expect = 7e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaaca 750
||||||||| ||||||||||||||||||||||
Sbjct: 198 acctgccatagtttagcttcaacaccttcaaca 166
>gb|BP862932.1|BP862932 BP862932 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-64-O13 5',
mRNA sequence
Length = 378
Score = 50.1 bits (25), Expect = 7e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaaca 750
||||||||| ||||||||||||||||||||||
Sbjct: 236 acctgccatagtttagcttcaacaccttcaaca 204
>gb|R65249.1|R65249 13753 Lambda-PRL2 Arabidopsis thaliana cDNA clone 168D12T7, mRNA
sequence
Length = 211
Score = 48.1 bits (24), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacaga 752
||||||||| |||||||||||||||||||| |||
Sbjct: 42 acctgccatagtttagcttcaacaccttcaanaga 8
>gb|BP797523.1|BP797523 BP797523 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-03-K22 5',
mRNA sequence
Length = 394
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 729 tttagcttcaacaccttcaacaga 752
||||||||||||||||||||||||
Sbjct: 195 tttagcttcaacaccttcaacaga 172
>gb|BP800007.1|BP800007 BP800007 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-13-G19 5',
mRNA sequence
Length = 386
Score = 48.1 bits (24), Expect = 0.003
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||||||||||||||||| ||||| | || |||||| || ||||||
Sbjct: 207 acctgccatagtttagcttcaacaccttccacagaagcagctcctttccttatttcttca 148
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| ||| ||||||| |||||||| || ||||||||||
Sbjct: 147 gcccatttctcaacatgaccatacatagagtagtacacga 108
>gb|BP823749.1|BP823749 BP823749 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-G20 5',
mRNA sequence
Length = 369
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 729 tttagcttcaacaccttcaacaga 752
||||||||||||||||||||||||
Sbjct: 194 tttagcttcaacaccttcaacaga 171
>gb|BP866904.1|BP866904 BP866904 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-79-E08 5',
mRNA sequence
Length = 359
Score = 48.1 bits (24), Expect = 0.003
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| ||||||||| |||||||||||||| | || |||||| || ||||||
Sbjct: 205 acctgccatagtttagcttccacaccttcaacagaagcagctcctttccttatttcttca 146
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacga 817
|| ||| ||||||| |||||||| || ||||||||||
Sbjct: 145 gcccatttctcaacatgaccatacatagagtagtacacga 106
>gb|BP868173.1|BP868173 BP868173 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-83-H11 5',
mRNA sequence
Length = 334
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 729 tttagcttcaacaccttcaacaga 752
||||||||||||||||||||||||
Sbjct: 194 tttagcttcaacaccttcaacaga 171
>gb|AV553406.1|AV553406 AV553406 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ61h07R 5', mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.011
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 103 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 44
Query: 793 tgtccatacatggaatagtacac 815
|| |||||||| || ||||||||
Sbjct: 43 tgaccatacattgagtagtacac 21
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 256 gccatcataccaaacctcgttgggaagccgaaga 223
>gb|BP801145.1|BP801145 BP801145 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-18-J04 5',
mRNA sequence
Length = 386
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacaga 752
||||||||| |||||||||||||||||| |||||
Sbjct: 208 acctgccatagtttagcttcaacaccttccacaga 174
>gb|BP806303.1|BP806303 BP806303 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-09-F07 5',
mRNA sequence
Length = 380
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacaga 752
||||||||| |||||||||||||||||| |||||
Sbjct: 200 acctgccatagtttagcttcaacaccttccacaga 166
>gb|BP813450.1|BP813450 BP813450 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-06-H15 5',
mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacaga 752
||||||||| ||||||||| ||||||||||||||
Sbjct: 202 acctgccatagtttagcttccacaccttcaacaga 168
>gb|BT010514.1| Arabidopsis thaliana At4g27270 gene, complete cds
Length = 618
Score = 46.1 bits (23), Expect = 0.011
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 104 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 45
Query: 793 tgtccatacatggaatagtacac 815
|| |||||||| || ||||||||
Sbjct: 44 tgaccatacattgagtagtacac 22
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 257 gccatcataccaaacctcgttgggaagccgaaga 224
>dbj|AK221196.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
clone: RAFL23-01-P13
Length = 808
Score = 46.1 bits (23), Expect = 0.011
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 156 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 97
Query: 793 tgtccatacatggaatagtacac 815
|| |||||||| || ||||||||
Sbjct: 96 tgaccatacattgagtagtacac 74
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 309 gccatcataccaaacctcgttgggaagccgaaga 276
>ref|NM_118861.3| Arabidopsis thaliana FMN binding / oxidoreductase AT4G27270 mRNA,
complete cds
Length = 722
Score = 46.1 bits (23), Expect = 0.011
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 104 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 45
Query: 793 tgtccatacatggaatagtacac 815
|| |||||||| || ||||||||
Sbjct: 44 tgaccatacattgagtagtacac 22
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 257 gccatcataccaaacctcgttgggaagccgaaga 224
>gb|AV544869.1|AV544869 AV544869 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ61h07F 3', mRNA sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 466 gccatcataccaaacctcgttgggaagccgaaga 499
>gb|CF773233.1|CF773233 AG_FSL_14E12 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 14E12, mRNA sequence
Length = 371
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 138 gccatcataccaaacctcgttgggaagccgaaga 105
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 9574674 gccatcataccaaacctcgttgggaagccgaaga 9574707
Score = 42.1 bits (21), Expect = 0.17
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 9575589 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 9575648
Query: 793 tgtccatacatggaatagtac 813
|| |||||||| || ||||||
Sbjct: 9575649 tgaccatacattgagtagtac 9575669
>emb|AL030978.1|ATM4I22 Arabidopsis thaliana DNA chromosome 4, P1 clone M4I22 (ESSA project)
Length = 83371
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 37909 gccatcataccaaacctcgttgggaagccgaaga 37942
Score = 42.1 bits (21), Expect = 0.17
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 38824 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 38883
Query: 793 tgtccatacatggaatagtac 813
|| |||||||| || ||||||
Sbjct: 38884 tgaccatacattgagtagtac 38904
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66
Length = 198372
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 165755 gccatcataccaaacctcgttgggaagccgaaga 165788
Score = 42.1 bits (21), Expect = 0.17
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 166670 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 166729
Query: 793 tgtccatacatggaatagtac 813
|| |||||||| || ||||||
Sbjct: 166730 tgaccatacattgagtagtac 166750
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 580 gccatcattccgaacctcgttgggaacccgaaga 613
|||||||| || |||||||||||||| |||||||
Sbjct: 13661906 gccatcataccaaacctcgttgggaagccgaaga 13661939
Score = 42.1 bits (21), Expect = 0.17
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 13662821 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 13662880
Query: 793 tgtccatacatggaatagtac 813
|| |||||||| || ||||||
Sbjct: 13662881 tgaccatacattgagtagtac 13662901
>gb|CF652841.1|CF652841 80-L020164-066-001-O20-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001O201Q 5-PRIME, mRNA sequence
Length = 385
Score = 42.1 bits (21), Expect = 0.17
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 733 gcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaaca 792
||||||||||| |||||||| | ||||||||| ||||||| ||||| ||| | |||
Sbjct: 81 gcttcaacaccatcaacagaagcagcacctttcctaatctcttgagctaatttctccaca 22
Query: 793 tgtccatacatggaatagtac 813
|| |||||||| || ||||||
Sbjct: 21 tgaccatacattgagtagtac 1
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 331,649
Number of Sequences: 1013581
Number of extensions: 331649
Number of successful extensions: 23636
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23123
Number of HSP's gapped (non-prelim): 513
length of query: 962
length of database: 908,940,872
effective HSP length: 20
effective length of query: 942
effective length of database: 888,669,252
effective search space: 837126435384
effective search space used: 837126435384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)