BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.1
(964 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX832658.1|CNS0A1X5 Arabidopsis thaliana Full-length cD... 48 0.003
dbj|AB026634.1| Arabidopsis thaliana genomic DNA, chromosom... 48 0.003
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 48 0.003
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 48 0.003
gb|AA042324.1|AA042324 24661 CD4-13 Arabidopsis thaliana cD... 46 0.011
gb|T22183.1|T22183 4191 Lambda-PRL2 Arabidopsis thaliana cD... 46 0.011
gb|N96152.1|N96152 21848 Lambda-PRL1 Arabidopsis thaliana c... 46 0.011
gb|BE037951.1|BE037951 AA06H06 AA Arabidopsis thaliana cDNA... 46 0.011
gb|AV832232.1|AV832232 AV832232 RAFL11 Arabidopsis thaliana... 46 0.011
gb|CB258492.1|CB258492 04-E012733-014-002-G10-T7R MPIZ-ADIS... 46 0.011
gb|CD529157.1|CD529157 01O13 Arabidopsis Leaf Senescence Li... 46 0.011
gb|CD530666.1|CD530666 07F01 Arabidopsis Leaf Senescence Li... 46 0.011
gb|CD532604.1|CD532604 28B11 Arabidopsis Leaf Senescence Li... 46 0.011
gb|CB253667.1|CB253667 91-E018429-019-008-F23-T7R MPIZ-ADIS... 46 0.011
gb|BP797644.1|BP797644 BP797644 RAFL14 Arabidopsis thaliana... 46 0.011
gb|BP821475.1|BP821475 BP821475 RAFL19 Arabidopsis thaliana... 46 0.011
gb|BP824131.1|BP824131 BP824131 RAFL19 Arabidopsis thaliana... 46 0.011
gb|BP833347.1|BP833347 BP833347 RAFL19 Arabidopsis thaliana... 46 0.011
gb|BP844692.1|BP844692 BP844692 RAFL21 Arabidopsis thaliana... 46 0.011
gb|BP857659.1|BP857659 BP857659 RAFL21 Arabidopsis thaliana... 46 0.011
gb|AY120735.1| Arabidopsis thaliana 1,4-benzoquinone reduct... 46 0.011
gb|BT002194.1| Arabidopsis thaliana 1,4-benzoquinone reduct... 46 0.011
ref|NM_124830.3| Arabidopsis thaliana FQR1 (FLAVODOXIN-LIKE... 46 0.011
gb|BP848283.1|BP848283 BP848283 RAFL21 Arabidopsis thaliana... 42 0.18
gb|BP862932.1|BP862932 BP862932 RAFL21 Arabidopsis thaliana... 42 0.18
>emb|BX832658.1|CNS0A1X5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH87ZD12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1243
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggtc 240
||||||||||||||||| ||||| |||||||||||
Sbjct: 87 tctgttgaaggtgttgaagctaaactatggcaggtc 122
>dbj|AB026634.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F24B18
Length = 50524
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggtc 240
||||||||||||||||| ||||| |||||||||||
Sbjct: 41562 tctgttgaaggtgttgaagctaaactatggcaggtc 41597
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggtc 240
||||||||||||||||| ||||| |||||||||||
Sbjct: 19786510 tctgttgaaggtgttgaagctaaactatggcaggtc 19786545
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggtc 240
||||||||||||||||| ||||| |||||||||||
Sbjct: 22142339 tctgttgaaggtgttgaagctaaactatggcaggtc 22142374
>gb|AA042324.1|AA042324 24661 CD4-13 Arabidopsis thaliana cDNA clone E6D6T7, mRNA sequence
Length = 526
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 142 tctgttgaaggtgttgaagctaaactatggcaggt 176
>gb|T22183.1|T22183 4191 Lambda-PRL2 Arabidopsis thaliana cDNA clone 98J23T7, mRNA
sequence
Length = 501
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 139 tctgttgaaggtgttgaagctaaactatggcaggt 173
>gb|N96152.1|N96152 21848 Lambda-PRL1 Arabidopsis thaliana cDNA clone G7B11T7, mRNA
sequence
Length = 503
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 108 tctgttgaaggtgttgaagctaaactatggcaggt 142
>gb|BE037951.1|BE037951 AA06H06 AA Arabidopsis thaliana cDNA 5', mRNA sequence
Length = 691
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 139 tctgttgaaggtgttgaagctaaactatggcaggt 173
>gb|AV832232.1|AV832232 AV832232 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-06-N14 5',
mRNA sequence
Length = 614
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 174 tctgttgaaggtgttgaagctaaactatggcaggt 208
>gb|CB258492.1|CB258492 04-E012733-014-002-G10-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771G102Q 5-PRIME, mRNA sequence
Length = 655
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 131 tctgttgaaggtgttgaagctaaactatggcaggt 165
>gb|CD529157.1|CD529157 01O13 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 360
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 81 tctgttgaaggtgttgaagctaaactatggcaggt 115
>gb|CD530666.1|CD530666 07F01 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 329
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 146 tctgttgaaggtgttgaagctaaactatggcaggt 180
>gb|CD532604.1|CD532604 28B11 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 465
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 136 tctgttgaaggtgttgaagctaaactatggcaggt 170
>gb|CB253667.1|CB253667 91-E018429-019-008-F23-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768F238Q 5-PRIME, mRNA sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 126 tctgttgaaggtgttgaagctaaactatggcaggt 160
>gb|BP797644.1|BP797644 BP797644 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-04-C13 5',
mRNA sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 94 tctgttgaaggtgttgaagctaaactatggcaggt 128
>gb|BP821475.1|BP821475 BP821475 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-58-D03 5',
mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 164 tctgttgaaggtgttgaagctaaactatggcaggt 198
>gb|BP824131.1|BP824131 BP824131 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-08-J22 5',
mRNA sequence
Length = 379
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 171 tctgttgaaggtgttgaagctaaactatggcaggt 205
>gb|BP833347.1|BP833347 BP833347 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-95-M19 5',
mRNA sequence
Length = 381
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 164 tctgttgaaggtgttgaagctaaactatggcaggt 198
>gb|BP844692.1|BP844692 BP844692 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-91-D18 5',
mRNA sequence
Length = 404
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 171 tctgttgaaggtgttgaagctaaactatggcaggt 205
>gb|BP857659.1|BP857659 BP857659 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-34-F10 5',
mRNA sequence
Length = 365
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 165 tctgttgaaggtgttgaagctaaactatggcaggt 199
>gb|AY120735.1| Arabidopsis thaliana 1,4-benzoquinone reductase-like protein
(At5g54500) mRNA, complete cds
Length = 913
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 174 tctgttgaaggtgttgaagctaaactatggcaggt 208
>gb|BT002194.1| Arabidopsis thaliana 1,4-benzoquinone reductase-like protein
(At5g54500) mRNA, complete cds
Length = 726
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 85 tctgttgaaggtgttgaagctaaactatggcaggt 119
>ref|NM_124830.3| Arabidopsis thaliana FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)
AT5G54500 (FQR1) mRNA, complete cds
Length = 952
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 205 tctgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||||| ||||| ||||||||||
Sbjct: 174 tctgttgaaggtgttgaagctaaactatggcaggt 208
>gb|BP848283.1|BP848283 BP848283 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-04-N11 5',
mRNA sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 207 tgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||| ||||| ||||||||||
Sbjct: 166 tgttgaaggtgttgaagctaaactatggcaggt 198
>gb|BP862932.1|BP862932 BP862932 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-64-O13 5',
mRNA sequence
Length = 378
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 207 tgttgaaggtgttgaggctaagatatggcaggt 239
||||||||||||||| ||||| ||||||||||
Sbjct: 204 tgttgaaggtgttgaagctaaactatggcaggt 236
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 321,571
Number of Sequences: 1013581
Number of extensions: 321571
Number of successful extensions: 22749
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22494
Number of HSP's gapped (non-prelim): 255
length of query: 964
length of database: 908,940,872
effective HSP length: 20
effective length of query: 944
effective length of database: 888,669,252
effective search space: 838903773888
effective search space used: 838903773888
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)