BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF001535.1|ATAF001535 Arabidopsis thaliana chromosome IV... 40 0.46
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 40 0.46
emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome... 40 0.46
gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 fr... 40 0.46
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.46
>gb|AF001535.1|ATAF001535 Arabidopsis thaliana chromosome IV cosmid AGAA, complete sequence
Length = 27502
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 486 aacacaaacgaagttttgtt 505
||||||||||||||||||||
Sbjct: 26039 aacacaaacgaagttttgtt 26020
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 486 aacacaaacgaagttttgtt 505
||||||||||||||||||||
Sbjct: 924078 aacacaaacgaagttttgtt 924059
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5
Length = 198220
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 486 aacacaaacgaagttttgtt 505
||||||||||||||||||||
Sbjct: 154138 aacacaaacgaagttttgtt 154119
>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to
11.6 cM, complete sequence
Length = 105654
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 486 aacacaaacgaagttttgtt 505
||||||||||||||||||||
Sbjct: 51534 aacacaaacgaagttttgtt 51515
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 486 aacacaaacgaagttttgtt 505
||||||||||||||||||||
Sbjct: 925269 aacacaaacgaagttttgtt 925250
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318,811
Number of Sequences: 1013581
Number of extensions: 318811
Number of successful extensions: 26260
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25959
Number of HSP's gapped (non-prelim): 301
length of query: 646
length of database: 908,940,872
effective HSP length: 20
effective length of query: 626
effective length of database: 888,669,252
effective search space: 556306951752
effective search space used: 556306951752
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)