BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-... 96 1e-017
gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-... 96 1e-017
gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, compl... 96 1e-017
emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cD... 96 1e-017
dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, cl... 96 1e-017
dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, cl... 96 1e-017
ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2)... 96 1e-017
gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana... 62 2e-007
gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 B... 62 2e-007
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 62 2e-007
gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromoso... 62 2e-007
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 62 2e-007
gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green ... 48 0.003
gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20... 48 0.003
gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20... 48 0.003
gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, compl... 48 0.003
gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G1... 48 0.003
ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1)... 48 0.003
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.003
>gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701668691, mRNA sequence
Length = 551
Score = 95.6 bits (48), Expect = 1e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 408 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 349
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
|||||||||||| | || || ||||| | |||||||||||||| ||||| ||||||
Sbjct: 348 acacttcagactgaccatggagaagaagagttatgtagtgtgtatgtaccaacgaatcat 289
Query: 124 ctgtacatcggtgatatatttctggtga 151
|||||||| || ||| | ||||||||||
Sbjct: 288 ctgtacataggagatgtgtttctggtga 261
>gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767P0818Q 5-PRIME, mRNA sequence
Length = 664
Score = 95.6 bits (48), Expect = 1e-017
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 203 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 262
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
|||||||||||| | || || ||||| | |||||||||||||| ||||| ||||||
Sbjct: 263 acacttcagactgaccatggagaagaagagttatgtagtgtgtatgtaccaacgaatcat 322
Query: 124 ctgtacatcggtgatatatttctggtga 151
|||||||| || ||| | ||||||||||
Sbjct: 323 ctgtacataggagatgtgtttctggtga 350
>gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, complete sequence
Length = 995
Score = 95.6 bits (48), Expect = 1e-017
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 543 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 602
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
|||||||||||| | || || ||||| | |||||||||||||| ||||| ||||||
Sbjct: 603 acacttcagactgaccatggagaagaagagttatgtagtgtgtatgtaccaacgaatcat 662
Query: 124 ctgtacatcggtgatatatttctggtga 151
|||||||| || ||| | ||||||||||
Sbjct: 663 ctgtacataggagatgtgtttctggtga 690
>emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB41ZB12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1277
Score = 95.6 bits (48), Expect = 1e-017
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 514 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 573
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
|||||||||||| | || || ||||| | |||||||||||||| ||||| ||||||
Sbjct: 574 acacttcagactgaccatggagaagaagagttatgtagtgtgtatgtaccaacgaatcat 633
Query: 124 ctgtacatcggtgatatatttctggtga 151
|||||||| || ||| | ||||||||||
Sbjct: 634 ctgtacataggagatgtgtttctggtga 661
>dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-23-L15
Length = 999
Score = 95.6 bits (48), Expect = 1e-017
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 553 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 612
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
|||||||||||| | || || ||||| | |||||||||||||| ||||| ||||||
Sbjct: 613 acacttcagactgaccatggagaagaagagttatgtagtgtgtatgtaccaacgaatcat 672
Query: 124 ctgtacatcggtgatatatttctggtga 151
|||||||| || ||| | ||||||||||
Sbjct: 673 ctgtacataggagatgtgtttctggtga 700
>dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-30-F01
Length = 995
Score = 95.6 bits (48), Expect = 1e-017
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 553 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 612
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
|||||||||||| | || || ||||| | |||||||||||||| ||||| ||||||
Sbjct: 613 acacttcagactgaccatggagaagaagagttatgtagtgtgtatgtaccaacgaatcat 672
Query: 124 ctgtacatcggtgatatatttctggtga 151
|||||||| || ||| | ||||||||||
Sbjct: 673 ctgtacataggagatgtgtttctggtga 700
>ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2) mRNA, complete cds
Length = 1304
Score = 95.6 bits (48), Expect = 1e-017
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 543 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 602
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
|||||||||||| | || || ||||| | |||||||||||||| ||||| ||||||
Sbjct: 603 acacttcagactgaccatggagaagaagagttatgtagtgtgtatgtaccaacgaatcat 662
Query: 124 ctgtacatcggtgatatatttctggtga 151
|||||||| || ||| | ||||||||||
Sbjct: 663 ctgtacataggagatgtgtttctggtga 690
>gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 1132
Score = 61.9 bits (31), Expect = 2e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 97 tgtagtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggtga 151
|||||||||||||| ||||| |||||||||||||| || ||| | ||||||||||
Sbjct: 663 tgtagtgtgtatgtaccaacgaatcatctgtacataggagatgtgtttctggtga 609
>gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 BAC F2H10 genomic sequence, complete
sequence
Length = 95870
Score = 61.9 bits (31), Expect = 2e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 97 tgtagtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggtga 151
|||||||||||||| ||||| |||||||||||||| || ||| | ||||||||||
Sbjct: 91841 tgtagtgtgtatgtaccaacgaatcatctgtacataggagatgtgtttctggtga 91787
Score = 48.1 bits (24), Expect = 0.003
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 92017 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 91958
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 61.9 bits (31), Expect = 2e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 97 tgtagtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggtga 151
|||||||||||||| ||||| |||||||||||||| || ||| | ||||||||||
Sbjct: 715295 tgtagtgtgtatgtaccaacgaatcatctgtacataggagatgtgtttctggtga 715241
Score = 48.1 bits (24), Expect = 0.003
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 715471 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 715412
>gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromosome 1, near 59 cM,
complete sequence
Length = 129271
Score = 61.9 bits (31), Expect = 2e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 97 tgtagtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggtga 151
|||||||||||||| ||||| |||||||||||||| || ||| | ||||||||||
Sbjct: 971 tgtagtgtgtatgtaccaacgaatcatctgtacataggagatgtgtttctggtga 917
Score = 48.1 bits (24), Expect = 0.003
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 1147 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 1088
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 61.9 bits (31), Expect = 2e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 97 tgtagtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggtga 151
|||||||||||||| ||||| |||||||||||||| || ||| | ||||||||||
Sbjct: 16231405 tgtagtgtgtatgtaccaacgaatcatctgtacataggagatgtgtttctggtga 16231351
Score = 48.1 bits (24), Expect = 0.003
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||| || ||||| || || ||||||||||| ||||||||||| || |||||| |||||
Sbjct: 16231581 gcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattacatcatcggtg 16231522
>gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ109h08F 3', mRNA sequence
Length = 583
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 28 ggtgaatatgcatttggattcataacatcaac 59
||||||||||||||||| ||||| ||||||||
Sbjct: 460 ggtgaatatgcatttggcttcattacatcaac 429
>gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 1084
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 28 ggtgaatatgcatttggattcataacatcaac 59
||||||||||||||||| ||||| ||||||||
Sbjct: 653 ggtgaatatgcatttggcttcattacatcaac 684
>gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 850
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 28 ggtgaatatgcatttggattcataacatcaac 59
||||||||||||||||| ||||| ||||||||
Sbjct: 514 ggtgaatatgcatttggcttcattacatcaac 545
>gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, complete sequence
Length = 1111
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 28 ggtgaatatgcatttggattcataacatcaac 59
||||||||||||||||| ||||| ||||||||
Sbjct: 700 ggtgaatatgcatttggcttcattacatcaac 731
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete
sequence
Length = 97814
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 28 ggtgaatatgcatttggattcataacatcaac 59
||||||||||||||||| ||||| ||||||||
Sbjct: 27606 ggtgaatatgcatttggcttcattacatcaac 27637
>ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1) mRNA, complete cds
Length = 1203
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 28 ggtgaatatgcatttggattcataacatcaac 59
||||||||||||||||| ||||| ||||||||
Sbjct: 700 ggtgaatatgcatttggcttcattacatcaac 731
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 28 ggtgaatatgcatttggattcataacatcaac 59
||||||||||||||||| ||||| ||||||||
Sbjct: 8698207 ggtgaatatgcatttggcttcattacatcaac 8698176
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 765,414
Number of Sequences: 1013581
Number of extensions: 765414
Number of successful extensions: 71206
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69426
Number of HSP's gapped (non-prelim): 1780
length of query: 1041
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1021
effective length of database: 888,669,252
effective search space: 907331306292
effective search space used: 907331306292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)