BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.1
(1264 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-... 123 8e-026
gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, compl... 115 2e-023
emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cD... 115 2e-023
dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, cl... 115 2e-023
dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, cl... 115 2e-023
ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2)... 115 2e-023
gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-... 109 1e-021
gb|T04678.1|T04678 725 Lambda-PRL1 Arabidopsis thaliana cDN... 78 4e-012
gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, compl... 76 2e-011
gb|AV824257.1|AV824257 AV824257 RAFL6 Arabidopsis thaliana ... 72 3e-010
gb|AV831711.1|AV831711 AV831711 RAFL9 Arabidopsis thaliana ... 72 3e-010
gb|AV550281.1|AV550281 AV550281 Arabidopsis thaliana roots ... 72 3e-010
gb|AV550571.1|AV550571 AV550571 Arabidopsis thaliana roots ... 72 3e-010
gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green ... 72 3e-010
gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17... 72 3e-010
gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20... 72 3e-010
gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA,... 72 3e-010
gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20... 72 3e-010
gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, comp... 72 3e-010
gb|AY170845.1| Arabidopsis thaliana putative membrane prote... 72 3e-010
emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cD... 72 3e-010
ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASC... 72 3e-010
ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1)... 72 3e-010
gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana ... 64 6e-008
gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower... 64 6e-008
gb|BP854569.1|BP854569 BP854569 RAFL21 Arabidopsis thaliana... 64 6e-008
gb|BP856517.1|BP856517 BP856517 RAFL21 Arabidopsis thaliana... 62 2e-007
gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G1... 62 2e-007
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 62 2e-007
emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cD... 58 4e-006
gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 B... 56 2e-005
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 56 2e-005
gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromoso... 56 2e-005
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 56 2e-005
emb|AL091316.1|CNS00UQE Arabidopsis thaliana genome survey ... 54 6e-005
emb|BX002464.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 6e-005
gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots ... 52 2e-004
gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green ... 52 2e-004
gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana... 50 0.001
emb|BX820909.1|CNS0A9PK Arabidopsis thaliana Full-length cD... 48 0.004
gb|AV786450.1|AV786450 AV786450 RAFL6 Arabidopsis thaliana ... 46 0.015
gb|AV790003.1|AV790003 AV790003 RAFL6 Arabidopsis thaliana ... 46 0.015
gb|AV538132.1|AV538132 AV538132 Arabidopsis thaliana roots ... 46 0.015
>gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767P0818Q 5-PRIME, mRNA sequence
Length = 664
Score = 123 bits (62), Expect = 8e-026
Identities = 215/266 (80%)
Strand = Plus / Minus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || ||| |||||||||| |
Sbjct: 396 attccttctcggatcgataaatttggccttatgatttcttcactactcaccagaaacaca 337
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
|| || ||||| |||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct: 336 tctcctatgtacagatgattcgttggtacatacacactacataactcttcttctccatgg 277
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
||||||||||| ||| | |||||| || ||||||||||| ||||||||||| || ||
Sbjct: 276 tcagtctgaagtgtcaccgatgatgtaataaatccaaatgcgtattcaccaatacgaggg 217
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||
Sbjct: 216 tgacggatgattgctacctctttaaaggcagtagtgttttggtctggagaaatagcagtg 157
Query: 903 ctgacttgctttgatgctgaatatat 928
|| | |||||| || |||||||||||
Sbjct: 156 ctaatttgcttagaagctgaatatat 131
>gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, complete sequence
Length = 995
Score = 115 bits (58), Expect = 2e-023
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 736 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 677
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
|| || ||||| |||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct: 676 tctcctatgtacagatgattcgttggtacatacacactacataactcttcttctccatgg 617
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
||||||||||| ||| | |||||| || ||||||||||| ||||||||||| || ||
Sbjct: 616 tcagtctgaagtgtcaccgatgatgtaataaatccaaatgcgtattcaccaatacgaggg 557
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||
Sbjct: 556 tgacggatgattgctacctctttaaaggcagtagtgttttggtctggagaaatagcagtg 497
Query: 903 ctgacttgctttgatgctgaatatat 928
|| | |||||| || |||||||||||
Sbjct: 496 ctaatttgcttagaagctgaatatat 471
Score = 77.8 bits (39), Expect = 4e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 313 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 254
Query: 1146 acaggaaaaaggactacacatccagtcataaactt 1180
|||||||| || || ||| ||||||||||||||||
Sbjct: 253 acaggaaagagtacgacaaatccagtcataaactt 219
>emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB41ZB12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1277
Score = 115 bits (58), Expect = 2e-023
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 707 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 648
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
|| || ||||| |||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct: 647 tctcctatgtacagatgattcgttggtacatacacactacataactcttcttctccatgg 588
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
||||||||||| ||| | |||||| || ||||||||||| ||||||||||| || ||
Sbjct: 587 tcagtctgaagtgtcaccgatgatgtaataaatccaaatgcgtattcaccaatacgaggg 528
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||
Sbjct: 527 tgacggatgattgctacctctttaaaggcagtagtgttttggtctggagaaatagcagtg 468
Query: 903 ctgacttgctttgatgctgaatatat 928
|| | |||||| || |||||||||||
Sbjct: 467 ctaatttgcttagaagctgaatatat 442
Score = 77.8 bits (39), Expect = 4e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 284 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 225
Query: 1146 acaggaaaaaggactacacatccagtcataaactt 1180
|||||||| || || ||| ||||||||||||||||
Sbjct: 224 acaggaaagagtacgacaaatccagtcataaactt 190
>dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-23-L15
Length = 999
Score = 115 bits (58), Expect = 2e-023
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 746 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 687
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
|| || ||||| |||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct: 686 tctcctatgtacagatgattcgttggtacatacacactacataactcttcttctccatgg 627
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
||||||||||| ||| | |||||| || ||||||||||| ||||||||||| || ||
Sbjct: 626 tcagtctgaagtgtcaccgatgatgtaataaatccaaatgcgtattcaccaatacgaggg 567
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||
Sbjct: 566 tgacggatgattgctacctctttaaaggcagtagtgttttggtctggagaaatagcagtg 507
Query: 903 ctgacttgctttgatgctgaatatat 928
|| | |||||| || |||||||||||
Sbjct: 506 ctaatttgcttagaagctgaatatat 481
Score = 77.8 bits (39), Expect = 4e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 323 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 264
Query: 1146 acaggaaaaaggactacacatccagtcataaactt 1180
|||||||| || || ||| ||||||||||||||||
Sbjct: 263 acaggaaagagtacgacaaatccagtcataaactt 229
>dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-30-F01
Length = 995
Score = 115 bits (58), Expect = 2e-023
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 746 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 687
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
|| || ||||| |||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct: 686 tctcctatgtacagatgattcgttggtacatacacactacataactcttcttctccatgg 627
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
||||||||||| ||| | |||||| || ||||||||||| ||||||||||| || ||
Sbjct: 626 tcagtctgaagtgtcaccgatgatgtaataaatccaaatgcgtattcaccaatacgaggg 567
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||
Sbjct: 566 tgacggatgattgctacctctttaaaggcagtagtgttttggtctggagaaatagcagtg 507
Query: 903 ctgacttgctttgatgctgaatatat 928
|| | |||||| || |||||||||||
Sbjct: 506 ctaatttgcttagaagctgaatatat 481
Score = 77.8 bits (39), Expect = 4e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 323 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 264
Query: 1146 acaggaaaaaggactacacatccagtcataaactt 1180
|||||||| || || ||| ||||||||||||||||
Sbjct: 263 acaggaaagagtacgacaaatccagtcataaactt 229
>ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2) mRNA, complete cds
Length = 1304
Score = 115 bits (58), Expect = 2e-023
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 736 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 677
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
|| || ||||| |||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct: 676 tctcctatgtacagatgattcgttggtacatacacactacataactcttcttctccatgg 617
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
||||||||||| ||| | |||||| || ||||||||||| ||||||||||| || ||
Sbjct: 616 tcagtctgaagtgtcaccgatgatgtaataaatccaaatgcgtattcaccaatacgaggg 557
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||
Sbjct: 556 tgacggatgattgctacctctttaaaggcagtagtgttttggtctggagaaatagcagtg 497
Query: 903 ctgacttgctttgatgctgaatatat 928
|| | |||||| || |||||||||||
Sbjct: 496 ctaatttgcttagaagctgaatatat 471
Score = 77.8 bits (39), Expect = 4e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 313 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 254
Query: 1146 acaggaaaaaggactacacatccagtcataaactt 1180
|||||||| || || ||| ||||||||||||||||
Sbjct: 253 acaggaaagagtacgacaaatccagtcataaactt 219
>gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701668691, mRNA sequence
Length = 551
Score = 109 bits (55), Expect = 1e-021
Identities = 213/266 (80%)
Strand = Plus / Plus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 215 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 274
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactacacagttcttcatcgcctttg 782
|| || ||||| |||||||| ||||| |||||||||||||| | ||||| || || | |
Sbjct: 275 tctcctatgtacagatgattcgttggtacatacacactacataactcttcttctccatgg 334
Query: 783 tcagtctgaaggaccacagttgatgttatgaatccaaatgcatattcaccaattcgtgga 842
||||||||||| ||| | |||||| || ||||||||||| ||||||||||| || ||
Sbjct: 335 tcagtctgaagtgtcaccgatgatgtaataaatccaaatgcgtattcaccaatacgaggg 394
Query: 843 tgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaattgcagtg 902
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||
Sbjct: 395 tgacggatgattgctacctctttaaaggcagtagtgttttggtctggagaaatagcagtg 454
Query: 903 ctgacttgctttgatgctgaatatat 928
|| | |||||| || ||| |||||||
Sbjct: 455 ctaatttgcttagaagctnaatatat 480
>gb|T04678.1|T04678 725 Lambda-PRL1 Arabidopsis thaliana cDNA clone SCA3T7P, mRNA
sequence
Length = 435
Score = 77.8 bits (39), Expect = 4e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 284 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 225
Query: 1146 acaggaaaaaggactacacatccagtcataaactt 1180
|||||||| || || ||| ||||||||||||||||
Sbjct: 224 acaggaaagagtacgacaaatccagtcataaactt 190
>gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, complete sequence
Length = 1111
Score = 75.8 bits (38), Expect = 2e-011
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | ||||||||||| |||||||| | |||||||| ||| |||
Sbjct: 497 gaagtcaaaaaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaag 438
Query: 1095 aaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaa 1152
|| ||||| ||||| ||||||||||||||||| | |||| |||||||||| |||||
Sbjct: 437 aatccatcgacaaagtgaataaaccaccatgttgtatagaaagtgactgcaataggaa 380
Score = 71.9 bits (36), Expect = 3e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| ||||||||||||||||| | || ||||| | || ||||||
Sbjct: 734 acagttgatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgca 675
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 674 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 619
>gb|AV824257.1|AV824257 AV824257 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-K21 5', mRNA
sequence
Length = 671
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 492 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 433
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 432 aatccatcgacaaagtgaataaaccaccatgt 401
>gb|AV831711.1|AV831711 AV831711 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-94-N13 5', mRNA
sequence
Length = 578
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | ||||||||||| |||||||| | |||||||| ||| |||
Sbjct: 451 gaagtcaaaaaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaag 392
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 391 aatccatcgacaaagtgaataaaccaccatgt 360
>gb|AV550281.1|AV550281 AV550281 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ110c07R 5', mRNA sequence
Length = 510
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 459 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 400
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 399 aatccatcgacaaagtgaataaaccaccatgt 368
>gb|AV550571.1|AV550571 AV550571 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ114d02R 5', mRNA sequence
Length = 500
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 338 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 279
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 278 aatccatcgacaaagtgaataaaccaccatgt 247
>gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ109h08F 3', mRNA sequence
Length = 583
Score = 71.9 bits (36), Expect = 3e-010
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| ||||||||||||||||| | || ||||| | || ||||||
Sbjct: 426 acagttgatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgca 485
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 486 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 541
>gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 1069
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 491 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 432
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 431 aatccatcgacaaagtgaataaaccaccatgt 400
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 728 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 669
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 668 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 613
>gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 1084
Score = 71.9 bits (36), Expect = 3e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| ||||||||||||||||| | || ||||| | || ||||||
Sbjct: 687 acagttgatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgca 628
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 627 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 572
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | ||||||||||| |||||||| | |||||||| ||| |||
Sbjct: 450 gaagtcaaaaaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaag 391
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 390 aatccatcgacaaagtgaataaaccaccatgt 359
>gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 807
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 341 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 282
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 281 aatccatcgacaaagtgaataaaccaccatgt 250
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 578 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 519
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 518 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 463
>gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 850
Score = 71.9 bits (36), Expect = 3e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| ||||||||||||||||| | || ||||| | || ||||||
Sbjct: 548 acagttgatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgca 489
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 488 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 433
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | ||||||||||| |||||||| | |||||||| ||| |||
Sbjct: 311 gaagtcaaaaaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaag 252
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 251 aatccatcgacaaagtgaataaaccaccatgt 220
>gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, complete sequence
Length = 1165
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 490 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 431
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 430 aatccatcgacaaagtgaataaaccaccatgt 399
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 727 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 668
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 667 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 612
>gb|AY170845.1| Arabidopsis thaliana putative membrane protein COV (COV) mRNA,
complete cds
Length = 1127
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 469 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 410
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 409 aatccatcgacaaagtgaataaaccaccatgt 378
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 706 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 647
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 646 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 591
>emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZH10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1014
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 407 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 348
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 347 aatccatcgacaaagtgaataaaccaccatgt 316
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 644 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 585
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 584 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 529
>ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASCULAR RING) AT2G20120 (COV1)
mRNA, complete cds
Length = 1170
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 490 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 431
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 430 aatccatcgacaaagtgaataaaccaccatgt 399
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 727 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 668
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 667 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 612
>ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1) mRNA, complete cds
Length = 1203
Score = 71.9 bits (36), Expect = 3e-010
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| ||||||||||||||||| | || ||||| | || ||||||
Sbjct: 734 acagttgatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgca 675
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 674 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 619
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | ||||||||||| |||||||| | |||||||| ||| |||
Sbjct: 497 gaagtcaaaaaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaag 438
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 437 aatccatcgacaaagtgaataaaccaccatgt 406
>gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-K21 3', mRNA
sequence
Length = 702
Score = 63.9 bits (32), Expect = 6e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
|||||||||||||| | |||||||| || |||||||| || |||||||| ||| |||
Sbjct: 579 gaagtcaaaaaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaag 638
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| || || |||||||||||||||||
Sbjct: 639 aatccatcgaccaagtgaataaaccaccatgt 670
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 342 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 401
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 402 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 457
>gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB025g07F 3', mRNA sequence
Length = 602
Score = 63.9 bits (32), Expect = 6e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 444 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 503
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctt 913
||||| |||||||| ||||||||||| || || || |||||||||| ||||||
Sbjct: 504 acttccttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgctt 559
>gb|BP854569.1|BP854569 BP854569 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-23-L15 5',
mRNA sequence
Length = 374
Score = 63.9 bits (32), Expect = 6e-008
Identities = 78/92 (84%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| ||||||||||| || || ||||||||||| |||||| |||| || || || |||
Sbjct: 318 ctgaagaaaccatcaacgaactggataaaccaccaagtgatg-agaatgtaacagctaca 260
Query: 1149 ggaaaaaggactacacatccagtcataaactt 1180
||||| || || ||| ||||||||||||||||
Sbjct: 259 ggaaagagtacgacaaatccagtcataaactt 228
>gb|BP856517.1|BP856517 BP856517 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-30-F01 5',
mRNA sequence
Length = 417
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || | ||||||||||| ||||||| ||| | || ||
Sbjct: 322 ggactgaagaaaccatcaacgaacttgataaaccaccaagtgatgaggaatttaacagct 263
Query: 1146 acaggaaaaaggactacacatccagtcataaactt 1180
|||||||| || || ||| ||||||||||||||||
Sbjct: 262 acaggaaagagtacgacaaatccagtcataaactt 228
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete
sequence
Length = 97814
Score = 61.9 bits (31), Expect = 2e-007
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| ||||||||||||||||| | || ||||| | || ||||||
Sbjct: 27640 acagttgatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgca 27581
Query: 858 acttctttgaaagcagtcgtattttgatctg 888
||||| |||||||| |||||||||||||
Sbjct: 27580 acttccttgaaagcttgtgtattttgatctg 27550
Score = 54.0 bits (27), Expect = 6e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 30695 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 30636
Query: 858 acttctttgaaagcagtcgtattttgatctg 888
||||| |||||||| |||||||||||||
Sbjct: 30635 acttccttgaaagcttgtgtattttgatctg 30605
Score = 54.0 bits (27), Expect = 6e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1052 accaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattg 1111
|||||||| || |||||||| || |||||||| ||| ||| || ||||| ||||| ||
Sbjct: 30264 accaaatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtg 30205
Query: 1112 aataaaccaccatgt 1126
|||||||||||||||
Sbjct: 30204 aataaaccaccatgt 30190
Score = 54.0 bits (27), Expect = 6e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1052 accaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattg 1111
||||||||||| |||||||| | |||||||| ||| ||| || ||||| ||||| ||
Sbjct: 27215 accaaatatgttgattccaagtagtgcatatattggagagaagaatccatcgacaaagtg 27156
Query: 1112 aataaaccaccatgt 1126
|||||||||||||||
Sbjct: 27155 aataaaccaccatgt 27141
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 61.9 bits (31), Expect = 2e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| ||||||||||||||||| | || ||||| | || ||||||
Sbjct: 8698173 acagttgatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgca 8698232
Query: 858 acttctttgaaagcagtcgtattttgatctg 888
||||| |||||||| |||||||||||||
Sbjct: 8698233 acttccttgaaagcttgtgtattttgatctg 8698263
Score = 54.0 bits (27), Expect = 6e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 1052 accaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattg 1111
||||||||||| |||||||| | |||||||| ||| ||| || ||||| ||||| ||
Sbjct: 8698598 accaaatatgttgattccaagtagtgcatatattggagagaagaatccatcgacaaagtg 8698657
Query: 1112 aataaaccaccatgt 1126
|||||||||||||||
Sbjct: 8698658 aataaaccaccatgt 8698672
Score = 54.0 bits (27), Expect = 6e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 1052 accaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattg 1111
|||||||| || |||||||| || |||||||| ||| ||| || ||||| ||||| ||
Sbjct: 8695549 accaaatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtg 8695608
Query: 1112 aataaaccaccatgt 1126
|||||||||||||||
Sbjct: 8695609 aataaaccaccatgt 8695623
Score = 54.0 bits (27), Expect = 6e-005
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 8695118 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 8695177
Query: 858 acttctttgaaagcagtcgtattttgatctg 888
||||| |||||||| |||||||||||||
Sbjct: 8695178 acttccttgaaagcttgtgtattttgatctg 8695208
>emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZG10 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1445
Score = 58.0 bits (29), Expect = 4e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1052 accaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattg 1111
|||||||| || |||||||| || |||||||| ||| ||| || ||||| ||||| ||
Sbjct: 540 accaaatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtg 481
Query: 1112 aataaaccaccatgtgatgaagaacgtgactgcaacaggaa 1152
||||||||||||||| || |||| |||| ||||| |||||
Sbjct: 480 aataaaccaccatgttatatagaaagtgattgcaataggaa 440
Score = 54.0 bits (27), Expect = 6e-005
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 971 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 912
Query: 858 acttctttgaaagcagtcgtattttgatctg 888
||||| |||||||| |||||||||||||
Sbjct: 911 acttccttgaaagcttgtgtattttgatctg 881
>gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 BAC F2H10 genomic sequence, complete
sequence
Length = 95870
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 92885 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 92944
Query: 1146 acaggaaa 1153
||||||||
Sbjct: 92945 acaggaaa 92952
Score = 52.0 bits (26), Expect = 2e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 803 tgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttc 862
|||||| || ||||||||||| ||||||||||| || || ||||| || ||||| || ||
Sbjct: 91964 tgatgtaataaatccaaatgcgtattcaccaatacgagggtgacggatgattgctacctc 92023
Query: 863 tttgaaagcagtcgtattttgatctg 888
||| || ||||| || ||||| ||||
Sbjct: 92024 tttaaaggcagtagtgttttggtctg 92049
Score = 50.1 bits (25), Expect = 0.001
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 91741 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 91800
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactaca 763
|| || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 91801 tctcctatgtacagatgattcgttggtacatacacactaca 91841
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 716339 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 716398
Query: 1146 acaggaaa 1153
||||||||
Sbjct: 716399 acaggaaa 716406
Score = 52.0 bits (26), Expect = 2e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 803 tgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttc 862
|||||| || ||||||||||| ||||||||||| || || ||||| || ||||| || ||
Sbjct: 715418 tgatgtaataaatccaaatgcgtattcaccaatacgagggtgacggatgattgctacctc 715477
Query: 863 tttgaaagcagtcgtattttgatctg 888
||| || ||||| || ||||| ||||
Sbjct: 715478 tttaaaggcagtagtgttttggtctg 715503
Score = 50.1 bits (25), Expect = 0.001
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 715195 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 715254
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactaca 763
|| || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 715255 tctcctatgtacagatgattcgttggtacatacacactaca 715295
>gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromosome 1, near 59 cM,
complete sequence
Length = 129271
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 2015 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 2074
Query: 1146 acaggaaa 1153
||||||||
Sbjct: 2075 acaggaaa 2082
Score = 52.0 bits (26), Expect = 2e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 803 tgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttc 862
|||||| || ||||||||||| ||||||||||| || || ||||| || ||||| || ||
Sbjct: 1094 tgatgtaataaatccaaatgcgtattcaccaatacgagggtgacggatgattgctacctc 1153
Query: 863 tttgaaagcagtcgtattttgatctg 888
||| || ||||| || ||||| ||||
Sbjct: 1154 tttaaaggcagtagtgttttggtctg 1179
Score = 50.1 bits (25), Expect = 0.001
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 871 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 930
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactaca 763
|| || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 931 tctcctatgtacagatgattcgttggtacatacacactaca 971
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1086 ggactgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgca 1145
|||||||| ||||||||||| || || ||||||||||| ||||||| ||| || || ||
Sbjct: 16232449 ggactgaagaaaccatcaacgaactggataaaccaccaagtgatgaggaatgtaacagct 16232508
Query: 1146 acaggaaa 1153
||||||||
Sbjct: 16232509 acaggaaa 16232516
Score = 52.0 bits (26), Expect = 2e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 803 tgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgcaacttc 862
|||||| || ||||||||||| ||||||||||| || || ||||| || ||||| || ||
Sbjct: 16231528 tgatgtaataaatccaaatgcgtattcaccaatacgagggtgacggatgattgctacctc 16231587
Query: 863 tttgaaagcagtcgtattttgatctg 888
||| || ||||| || ||||| ||||
Sbjct: 16231588 tttaaaggcagtagtgttttggtctg 16231613
Score = 50.1 bits (25), Expect = 0.001
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 16231305 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 16231364
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactaca 763
|| || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 16231365 tctcctatgtacagatgattcgttggtacatacacactaca 16231405
>emb|AL091316.1|CNS00UQE Arabidopsis thaliana genome survey sequence SP6 end of BAC T7K15 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 330
Score = 54.0 bits (27), Expect = 6e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1052 accaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattg 1111
||||||||||| |||||||| | |||||||| ||| ||| || ||||| ||||| ||
Sbjct: 230 accaaatatgttgattccaagtagtgcatatattggagagaagaatccatcgacaaagtg 171
Query: 1112 aataaaccaccatgt 1126
|||||||||||||||
Sbjct: 170 aataaaccaccatgt 156
>emb|BX002464.1| Arabidopsis thaliana T-DNA flanking sequence GK-364E07-016996,
genomic survey sequence
Length = 687
Score = 54.0 bits (27), Expect = 6e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 1052 accaaatatgtcgattccaatttttgcatataggggactgaaaaaaccatcaacaaattg 1111
|||||||| || |||||||| || |||||||| ||| ||| || ||||| ||||| ||
Sbjct: 176 accaaatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtg 235
Query: 1112 aataaaccaccatgt 1126
|||||||||||||||
Sbjct: 236 aataaaccaccatgt 250
>gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ42a07F 3', mRNA sequence
Length = 447
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 372 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 431
Query: 858 acttctttgaaagc 871
||||| ||||||||
Sbjct: 432 acttccttgaaagc 445
>gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ112h04F 3', mRNA sequence
Length = 486
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
||||||||||| ||||| |||||||| |||||||| | || ||||| | || ||||||
Sbjct: 412 acagttgatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgca 471
Query: 858 acttctttgaaagc 871
||||| ||||||||
Sbjct: 472 acttccttgaaagc 485
>gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 1132
Score = 50.1 bits (25), Expect = 0.001
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 663 attccttctcgaatggataaattaggtcttatgatctcctcagagttcaccagaaatatg 722
||||||||||| || |||||||| || |||||||| || || |||||||||| |
Sbjct: 563 attccttctcggatcgataaatttggccttatgatttcttcgctactcaccagaaacaca 622
Query: 723 tcaccgatgtatagatgatttgttggcacatacacactaca 763
|| || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 623 tctcctatgtacagatgattcgttggtacatacacactaca 663
>emb|BX820909.1|CNS0A9PK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH80ZE08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1333
Score = 48.1 bits (24), Expect = 0.004
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1035 gaagtcaaaaaaccaagaccaaatatgtcgattccaatttttgcatataggggactgaaa 1094
||||| |||||||| | || ||||| || |||||||| || || ||||| ||| |||
Sbjct: 472 gaagtaaaaaaaccgaaacaaaatacgttgattccaagttgtgaatatattggagagaag 413
Query: 1095 aaaccatcaacaaattgaataaaccaccatgt 1126
|| ||||| ||||| |||||||||||||||||
Sbjct: 412 aatccatcgacaaagtgaataaaccaccatgt 381
>gb|AV786450.1|AV786450 AV786450 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-71-H23 3',
mRNA sequence
Length = 456
Score = 46.1 bits (23), Expect = 0.015
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcacc 832
||||||||||| ||||| |||||||| ||||||||
Sbjct: 412 acagttgatgtaatgaagccaaatgcgtattcacc 446
>gb|AV790003.1|AV790003 AV790003 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-86-L17 3',
mRNA sequence
Length = 428
Score = 46.1 bits (23), Expect = 0.015
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcacc 832
||||||||||| ||||| |||||||| ||||||||
Sbjct: 392 acagttgatgtaatgaagccaaatgcgtattcacc 426
>gb|AV538132.1|AV538132 AV538132 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ110c07F 3', mRNA sequence
Length = 464
Score = 46.1 bits (23), Expect = 0.015
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 798 acagttgatgttatgaatccaaatgcatattcacc 832
||||||||||| ||||| |||||||| ||||||||
Sbjct: 422 acagttgatgtaatgaagccaaatgcgtattcacc 456
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 786,174
Number of Sequences: 1013581
Number of extensions: 786174
Number of successful extensions: 59788
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58375
Number of HSP's gapped (non-prelim): 1373
length of query: 1264
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1244
effective length of database: 888,669,252
effective search space: 1105504549488
effective search space used: 1105504549488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)