BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY035019.1| Arabidopsis thaliana unknown protein (At2g20... 48 0.001
gb|AY059085.1| Arabidopsis thaliana unknown protein (At2g20... 48 0.001
gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H1... 48 0.001
dbj|AK176863.1| Arabidopsis thaliana mRNA, complete cds, cl... 48 0.001
ref|NM_127647.2| Arabidopsis thaliana transferase, transfer... 48 0.001
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.001
>gb|AY035019.1| Arabidopsis thaliana unknown protein (At2g20810) mRNA, complete cds
Length = 1909
Score = 48.1 bits (24), Expect = 0.001
Identities = 123/156 (78%)
Strand = Plus / Minus
Query: 177 aaccatgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttg 236
||||| |||||||| | ||||||||| | ||||| |||||| | ||||| ||||| ||
Sbjct: 961 aaccaagccttcattgcagcatagttgatctcattagtcacaagatgaaacacaactttc 902
Query: 237 tcagggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttg 296
|||||| | | || || | ||| ||||||||||| ||||| ||| ||||| |||||
Sbjct: 901 tcaggggccttggaattgagagcagtagaattaaccacaacagaagtagcaataatgtta 842
Query: 297 tctgagaagacacaaaaatgatagaggctgttatcc 332
|| || || ||||| ||||| ||||| |||||||||
Sbjct: 841 tcggaaaacacacagaaatggtagagactgttatcc 806
>gb|AY059085.1| Arabidopsis thaliana unknown protein (At2g20810) mRNA, complete cds
Length = 1642
Score = 48.1 bits (24), Expect = 0.001
Identities = 123/156 (78%)
Strand = Plus / Minus
Query: 177 aaccatgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttg 236
||||| |||||||| | ||||||||| | ||||| |||||| | ||||| ||||| ||
Sbjct: 827 aaccaagccttcattgcagcatagttgatctcattagtcacaagatgaaacacaactttc 768
Query: 237 tcagggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttg 296
|||||| | | || || | ||| ||||||||||| ||||| ||| ||||| |||||
Sbjct: 767 tcaggggccttggaattgagagcagtagaattaaccacaacagaagtagcaataatgtta 708
Query: 297 tctgagaagacacaaaaatgatagaggctgttatcc 332
|| || || ||||| ||||| ||||| |||||||||
Sbjct: 707 tcggaaaacacacagaaatggtagagactgttatcc 672
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete
sequence
Length = 129667
Score = 48.1 bits (24), Expect = 0.001
Identities = 123/156 (78%)
Strand = Plus / Plus
Query: 177 aaccatgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttg 236
||||| |||||||| | ||||||||| | ||||| |||||| | ||||| ||||| ||
Sbjct: 72872 aaccaagccttcattgcagcatagttgatctcattagtcacaagatgaaacacaactttc 72931
Query: 237 tcagggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttg 296
|||||| | | || || | ||| ||||||||||| ||||| ||| ||||| |||||
Sbjct: 72932 tcaggggccttggaattgagagcagtagaattaaccacaacagaagtagcaataatgtta 72991
Query: 297 tctgagaagacacaaaaatgatagaggctgttatcc 332
|| || || ||||| ||||| ||||| |||||||||
Sbjct: 72992 tcggaaaacacacagaaatggtagagactgttatcc 73027
>dbj|AK176863.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-42-C07
Length = 1945
Score = 48.1 bits (24), Expect = 0.001
Identities = 123/156 (78%)
Strand = Plus / Minus
Query: 177 aaccatgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttg 236
||||| |||||||| | ||||||||| | ||||| |||||| | ||||| ||||| ||
Sbjct: 983 aaccaagccttcattgcagcatagttgatctcattagtcacaagatgaaacacaactttc 924
Query: 237 tcagggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttg 296
|||||| | | || || | ||| ||||||||||| ||||| ||| ||||| |||||
Sbjct: 923 tcaggggccttggaattgagagcagtagaattaaccacaacagaagtagcaataatgtta 864
Query: 297 tctgagaagacacaaaaatgatagaggctgttatcc 332
|| || || ||||| ||||| ||||| |||||||||
Sbjct: 863 tcggaaaacacacagaaatggtagagactgttatcc 828
>ref|NM_127647.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT2G20810 mRNA,
complete cds
Length = 1915
Score = 48.1 bits (24), Expect = 0.001
Identities = 123/156 (78%)
Strand = Plus / Minus
Query: 177 aaccatgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttg 236
||||| |||||||| | ||||||||| | ||||| |||||| | ||||| ||||| ||
Sbjct: 961 aaccaagccttcattgcagcatagttgatctcattagtcacaagatgaaacacaactttc 902
Query: 237 tcagggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttg 296
|||||| | | || || | ||| ||||||||||| ||||| ||| ||||| |||||
Sbjct: 901 tcaggggccttggaattgagagcagtagaattaaccacaacagaagtagcaataatgtta 842
Query: 297 tctgagaagacacaaaaatgatagaggctgttatcc 332
|| || || ||||| ||||| ||||| |||||||||
Sbjct: 841 tcggaaaacacacagaaatggtagagactgttatcc 806
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.001
Identities = 123/156 (78%)
Strand = Plus / Minus
Query: 177 aaccatgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttg 236
||||| |||||||| | ||||||||| | ||||| |||||| | ||||| ||||| ||
Sbjct: 8965907 aaccaagccttcattgcagcatagttgatctcattagtcacaagatgaaacacaactttc 8965848
Query: 237 tcagggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttg 296
|||||| | | || || | ||| ||||||||||| ||||| ||| ||||| |||||
Sbjct: 8965847 tcaggggccttggaattgagagcagtagaattaaccacaacagaagtagcaataatgtta 8965788
Query: 297 tctgagaagacacaaaaatgatagaggctgttatcc 332
|| || || ||||| ||||| ||||| |||||||||
Sbjct: 8965787 tcggaaaacacacagaaatggtagagactgttatcc 8965752
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 208,023
Number of Sequences: 1013581
Number of extensions: 208023
Number of successful extensions: 13817
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13705
Number of HSP's gapped (non-prelim): 112
length of query: 515
length of database: 908,940,872
effective HSP length: 20
effective length of query: 495
effective length of database: 888,669,252
effective search space: 439891279740
effective search space used: 439891279740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)