BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419417.2.5
(733 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH212187.1|BH212187 SALK_007241 Arabidopsis thaliana TDN... 42 0.13
gb|AV782131.1|AV782131 AV782131 RAFL4 Arabidopsis thaliana ... 42 0.13
gb|AV565991.1|AV565991 AV565991 Arabidopsis thaliana green ... 42 0.13
gb|CF774184.1|CF774184 AG_FSL_28F06 Arabidopsis ag-1 35S:AG... 42 0.13
gb|BP588399.1|BP588399 BP588399 RAFL15 Arabidopsis thaliana... 42 0.13
gb|BP627218.1|BP627218 BP627218 RAFL17 Arabidopsis thaliana... 42 0.13
gb|BP785122.1|BP785122 BP785122 RAFL7 Arabidopsis thaliana ... 42 0.13
gb|BP825127.1|BP825127 BP825127 RAFL19 Arabidopsis thaliana... 42 0.13
gb|BP835910.1|BP835910 BP835910 RAFL19 Arabidopsis thaliana... 42 0.13
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.13
gb|AY045927.1| Arabidopsis thaliana putative beta-glucosida... 42 0.13
gb|AY142610.1| Arabidopsis thaliana putative beta-glucosida... 42 0.13
gb|AY085043.1| Arabidopsis thaliana clone 125606 mRNA, comp... 42 0.13
gb|AC013427.3|T1K7 Sequence of BAC T1K7 from Arabidopsis th... 42 0.13
emb|BX814106.1|CNS0AC9Y Arabidopsis thaliana Full-length cD... 42 0.13
dbj|AK221011.1| Arabidopsis thaliana mRNA for beta-glucosid... 42 0.13
ref|NM_102418.2| Arabidopsis thaliana hydrolase, hydrolyzin... 42 0.13
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.13
>gb|BH212187.1|BH212187 SALK_007241 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_007241, DNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 426 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 367
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 366 tttggtctctacttcgttgattacagagacaacctcaagag 326
>gb|AV782131.1|AV782131 AV782131 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-14-G14 3',
mRNA sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 391 catcactgaaaatggaatggacgac 367
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 246 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 187
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 186 tttggtctctacttcgttgattacagagacaacctcaagag 146
>gb|AV565991.1|AV565991 AV565991 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ234e10F 3', mRNA sequence
Length = 354
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 264 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 205
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 204 tttggtctctacttcgttgattacagagacaacctcaagag 164
>gb|CF774184.1|CF774184 AG_FSL_28F06 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 28F06, mRNA sequence
Length = 219
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 149 catcactgaaaatggaatggacgac 125
>gb|BP588399.1|BP588399 BP588399 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-46-C06 3',
mRNA sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 264 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 205
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 204 tttggtctctacttcgttgattacagagacaacctcaagag 164
>gb|BP627218.1|BP627218 BP627218 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-50-F02 3',
mRNA sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 399 catcactgaaaatggaatggacgac 375
>gb|BP785122.1|BP785122 BP785122 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-93-J01 3',
mRNA sequence
Length = 424
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 377 catcactgaaaatggaatggacgac 353
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 232 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 173
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 172 tttggtctctacttcgttgattacagagacaacctcaagag 132
>gb|BP825127.1|BP825127 BP825127 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-67-I10 5',
mRNA sequence
Length = 365
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 186 catcactgaaaatggaatggacgac 210
>gb|BP835910.1|BP835910 BP835910 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-14-N19 5',
mRNA sequence
Length = 382
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 185 catcactgaaaatggaatggacgac 209
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 9190178 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 9190237
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 9190238 tttggtctctacttcgttgattacagagacaacctcaagag 9190278
>gb|AY045927.1| Arabidopsis thaliana putative beta-glucosidase (At1g26560) mRNA,
complete cds
Length = 1779
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 1513 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 1572
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 1573 tttggtctctacttcgttgattacagagacaacctcaagag 1613
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 1368 catcactgaaaatggaatggacgac 1392
>gb|AY142610.1| Arabidopsis thaliana putative beta-glucosidase (At1g26560) mRNA,
complete cds
Length = 1562
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 1378 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 1437
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 1438 tttggtctctacttcgttgattacagagacaacctcaagag 1478
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 1233 catcactgaaaatggaatggacgac 1257
>gb|AY085043.1| Arabidopsis thaliana clone 125606 mRNA, complete sequence
Length = 1767
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 1507 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 1566
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 1567 tttggtctctacttcgttgattacagagacaacctcaagag 1607
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 1362 catcactgaaaatggaatggacgac 1386
>gb|AC013427.3|T1K7 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 89473
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 18872 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 18813
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 18812 tttggtctctacttcgttgattacagagacaacctcaagag 18772
>emb|BX814106.1|CNS0AC9Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB57ZF10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1445
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 1215 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 1274
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 1275 tttggtctctacttcgttgattacagagacaacctcaagag 1315
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 1070 catcactgaaaatggaatggacgac 1094
>dbj|AK221011.1| Arabidopsis thaliana mRNA for beta-glucosidase like protein,
partial cds, clone: RAFL22-67-I10
Length = 568
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 330 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 389
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 390 tttggtctctacttcgttgattacagagacaacctcaagag 430
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 185 catcactgaaaatggaatggacgac 209
>ref|NM_102418.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT1G26560 mRNA, complete cds
Length = 1776
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 1513 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 1572
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 1573 tttggtctctacttcgttgattacagagacaacctcaagag 1613
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catcactgaaaatgggatggacgac 79
||||||||||||||| |||||||||
Sbjct: 1368 catcactgaaaatggaatggacgac 1392
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.13
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 200 gggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtacacctccaga 259
|||||||||| |||||| | ||||||| ||||||||||| || || || | || |||
Sbjct: 9181558 gggtacttcgtatggtcgctattggacaattgggaatgggcagcaggttatagttcaaga 9181617
Query: 260 ttcgggctctacttcgtggactacaaggataacctcaagag 300
|| || ||||||||||| || |||| || |||||||||||
Sbjct: 9181618 tttggtctctacttcgttgattacagagacaacctcaagag 9181658
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,127
Number of Sequences: 1013581
Number of extensions: 228127
Number of successful extensions: 15631
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15427
Number of HSP's gapped (non-prelim): 196
length of query: 733
length of database: 908,940,872
effective HSP length: 20
effective length of query: 713
effective length of database: 888,669,252
effective search space: 633621176676
effective search space used: 633621176676
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)