BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.1
(614 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana ... 137 3e-030
gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-... 137 3e-030
gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveg... 137 3e-030
gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveg... 137 3e-030
gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots ... 137 3e-030
gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana ... 137 3e-030
gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloarteno... 137 3e-030
gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltrans... 137 3e-030
gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, ... 137 3e-030
gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltrans... 137 3e-030
emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cD... 137 3e-030
emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cD... 137 3e-030
emb|CQ804624.1| Sequence 1035 from Patent WO2004035798 137 3e-030
gb|AF195648.1| Arabidopsis thaliana sterol methyltransferas... 137 3e-030
ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTR... 137 3e-030
gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence 129 6e-028
gb|BP868811.1|BP868811 BP868811 RAFL21 Arabidopsis thaliana... 121 1e-025
gb|AV527723.1|AV527723 AV527723 Arabidopsis thaliana aboveg... 115 9e-024
gb|BP866348.1|BP866348 BP866348 RAFL21 Arabidopsis thaliana... 113 4e-023
dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosom... 74 3e-011
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 74 3e-011
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 74 3e-011
gb|BE527299.1|BE527299 M68G13STM Arabidopsis developing see... 52 1e-004
gb|AV557319.1|AV557319 AV557319 Arabidopsis thaliana green ... 52 1e-004
gb|AV821091.1|AV821091 AV821091 RAFL2 Arabidopsis thaliana ... 42 0.11
gb|CB262826.1|CB262826 46-E8862-008-010-E14-pBl2 MPIZ-ADIS-... 42 0.11
gb|CB264457.1|CB264457 61-E014996-035-003-J16-T7R MPIZ-ADIS... 42 0.11
gb|CF652694.1|CF652694 71-L020166-066-001-N17-SP6P MPIZ-ADI... 42 0.11
gb|BX838992.1|BX838992 BX838992 Arabidopsis thaliana Adult ... 42 0.11
gb|BX841210.1|BX841210 BX841210 Arabidopsis thaliana Flower... 42 0.11
gb|AV551735.1|AV551735 AV551735 Arabidopsis thaliana roots ... 42 0.11
gb|CF774308.1|CF774308 AG_FSL_30G11 Arabidopsis ag-1 35S:AG... 42 0.11
gb|CK118763.1|CK118763 216b06.p1 AtM1 Arabidopsis thaliana ... 42 0.11
gb|CK120373.1|CK120373 218n19.p1 AtM1 Arabidopsis thaliana ... 42 0.11
gb|CB254984.1|CB254984 53-E012998-019-004-I14-T7R MPIZ-ADIS... 42 0.11
gb|BP836692.1|BP836692 BP836692 RAFL19 Arabidopsis thaliana... 42 0.11
emb|X89867.1|ATSTERMET A.thaliana mRNA for sterol-C-methylt... 42 0.11
gb|U71400.1|ATU71400 Arabidopsis thaliana S-adenosyl-methio... 42 0.11
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.11
gb|AF375397.1| Arabidopsis thaliana At1g76090/T23E18_40 mRN... 42 0.11
gb|AY113031.1| Arabidopsis thaliana At1g76090/T23E18_40 mRN... 42 0.11
gb|AY128389.1| Arabidopsis thaliana 24-sterol C-methyltrans... 42 0.11
gb|AF332417.1| Arabidopsis thaliana putative sterol-C-methy... 42 0.11
gb|AY046042.1| Arabidopsis thaliana putative sterol-C-methy... 42 0.11
gb|AY113961.1| Arabidopsis thaliana putative sterol-C-methy... 42 0.11
emb|AX507120.1| Sequence 1815 from Patent WO0216655 42 0.11
emb|AX507161.1| Sequence 1856 from Patent WO0216655 42 0.11
gb|BT000750.1| Arabidopsis thaliana clone RAFL09-74-F07 (R1... 42 0.11
gb|BT002093.1| Arabidopsis thaliana 24-sterol C-methyltrans... 42 0.11
emb|AX573143.1| Sequence 20 from Patent WO02061072 42 0.11
emb|AX573145.1| Sequence 22 from Patent WO02061072 42 0.11
gb|AY086699.1| Arabidopsis thaliana clone 2688 mRNA, comple... 42 0.11
gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis tha... 42 0.11
gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsi... 42 0.11
emb|BX820027.1|CNS0A8GR Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX814372.1|CNS0AARG Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX815399.1|CNS0ACS8 Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX815418.1|CNS0ACX8 Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX815494.1|CNS0ACVZ Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX816701.1|CNS0AD1H Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX817173.1|CNS0AD6W Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX814807.1|CNS0ADN4 Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX815314.1|CNS0AEG7 Arabidopsis thaliana Full-length cD... 42 0.11
emb|BX816099.1|CNS0AEHI Arabidopsis thaliana Full-length cD... 42 0.11
emb|CQ804064.1| Sequence 475 from Patent WO2004035798 42 0.11
emb|Z83321.1|ATZ83321 A.thaliana 16 kb chromosome 1 DNA fra... 42 0.11
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.11
ref|NM_101884.2| Arabidopsis thaliana SMT2 (STEROL METHYLTR... 42 0.11
ref|NM_106258.3| Arabidopsis thaliana SMT3; S-adenosylmethi... 42 0.11
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.11
>gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-G19 5',
mRNA sequence
Length = 660
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 122 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 181
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 182 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 241
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 242 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 301
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 302 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 361
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 362 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 410
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 499 acatgtaactttgtcaaggctgacttcatgaagatgcc 536
>gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767K2117Q 5-PRIME, mRNA sequence
Length = 547
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 42 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 101
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 102 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 161
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 162 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 221
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 222 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 281
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 282 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 330
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 419 acatgtaactttgtcaaggctgacttcatgaagatgcc 456
>gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ10c01R 5', mRNA
sequence
Length = 553
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 122 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 181
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 182 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 241
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 242 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 301
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 302 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 361
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 362 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 410
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 499 acatgtaactttgtcaaggctgacttcatgaagatgcc 536
>gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ17h10R 5', mRNA
sequence
Length = 491
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 122 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 181
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 182 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 241
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 242 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 301
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 302 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 361
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 362 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 410
>gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ152g09F 3', mRNA sequence
Length = 603
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 94 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 153
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 154 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 213
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 214 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 273
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 274 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 333
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 334 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 382
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 471 acatgtaactttgtcaaggctgacttcatgaagatgcc 508
>gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011F11201
5-PRIME, mRNA sequence
Length = 831
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 109 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 168
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 169 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 228
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 229 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 288
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 289 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 348
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 349 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 397
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 486 acatgtaactttgtcaaggctgacttcatgaagatgcc 523
>gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloartenol-C24-methyltransferase (SMT1)
mRNA, complete cds
Length = 1269
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 98 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 157
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 158 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 217
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 218 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 277
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 278 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 337
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 338 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 386
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 475 acatgtaactttgtcaaggctgacttcatgaagatgcc 512
>gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1245
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 123 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 182
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 183 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 242
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 243 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 302
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 303 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 362
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 363 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 411
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 500 acatgtaactttgtcaaggctgacttcatgaagatgcc 537
>gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, complete cds
Length = 1080
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 125 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 184
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 185 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 244
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 245 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 304
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 305 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 364
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 365 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 413
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 502 acatgtaactttgtcaaggctgacttcatgaagatgcc 539
>gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1108
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 56 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 115
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 116 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 175
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 176 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 235
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 236 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 295
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 296 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 344
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 433 acatgtaactttgtcaaggctgacttcatgaagatgcc 470
>emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS13ZC03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1283
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 107 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 166
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 167 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 226
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 227 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 286
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 287 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 346
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 347 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 395
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 484 acatgtaactttgtcaaggctgacttcatgaagatgcc 521
>emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS90ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1198
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 82 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 141
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 142 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 201
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 202 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 261
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 262 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 321
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 322 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 370
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 459 acatgtaactttgtcaaggctgacttcatgaagatgcc 496
>emb|CQ804624.1| Sequence 1035 from Patent WO2004035798
Length = 1011
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 56 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 115
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 116 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 175
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 176 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 235
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 236 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 295
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 296 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 344
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 433 acatgtaactttgtcaaggctgacttcatgaagatgcc 470
>gb|AF195648.1| Arabidopsis thaliana sterol methyltransferase SMT1 (SMT1) mRNA,
complete cds
Length = 1257
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 109 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 168
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 169 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 228
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 229 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 288
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 289 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 348
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 349 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 397
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 486 acatgtaactttgtcaaggctgacttcatgaagatgcc 523
>ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTRANSFERASE 1) AT5G13710
(SMT1) mRNA, complete cds
Length = 1462
Score = 137 bits (69), Expect = 3e-030
Identities = 234/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 154 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 213
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 214 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 273
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 274 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 333
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| |||||
Sbjct: 334 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaaaggtac 393
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 394 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 442
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 531 acatgtaactttgtcaaggctgacttcatgaagatgcc 568
>gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence
Length = 1008
Score = 129 bits (65), Expect = 6e-028
Identities = 233/289 (80%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 53 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 112
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 113 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 172
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 173 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 232
Query: 355 tcaagcgacatgagcattttcttgccctgcaacttggtttgaaaccaggaatgaaggttt 414
| |||||||| ||||| |||||||| || || ||||| | |||||||| | |||
Sbjct: 233 ttaagcgacacgagcactttcttgctcttcagcttggcatccaaccaggacaaacggtac 292
Query: 415 tagatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
| ||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 293 tggatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 341
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 430 acatgtaactttgtcaaggctgacttcatgaagatgcc 467
>gb|BP868811.1|BP868811 BP868811 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-85-K07 5',
mRNA sequence
Length = 383
Score = 121 bits (61), Expect = 1e-025
Identities = 169/205 (82%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 137 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 196
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 197 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 256
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 257 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 316
Query: 355 tcaagcgacatgagcattttcttgc 379
| |||||||| ||||| ||||||||
Sbjct: 317 ttaagcgacacgagcactttcttgc 341
>gb|AV527723.1|AV527723 AV527723 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ43c07R 5', mRNA
sequence
Length = 318
Score = 115 bits (58), Expect = 9e-024
Identities = 139/166 (83%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 122 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 181
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 182 ccaattatactgacatggttaataagtactatgaccttgctactagcttttatgagtacg 241
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatc 340
| ||||| ||||||||||| ||||| || |||||||| ||||||||
Sbjct: 242 gatggggagaatccttccattttgcacaaagatggaaaggagaatc 287
>gb|BP866348.1|BP866348 BP866348 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-77-G19 5',
mRNA sequence
Length = 381
Score = 113 bits (57), Expect = 4e-023
Identities = 168/205 (81%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 137 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 196
Query: 235 ccaactatactgatatggttaataaatactatgatcttgccactagcttctatgagtatg 294
|||| |||| ||| ||||||||||| |||||||| ||||| |||||||| |||||||| |
Sbjct: 197 ccaattatagtgacatggttaataagtactatgaccttgctactagcttttatgagtacg 256
Query: 295 gttggggtgaatccttccactttgctcacagatggaatggagaatccttacgtgaaagca 354
| ||||| ||||||||||| ||||| || |||||||| |||||||| | || || || |
Sbjct: 257 gatggggagaatccttccattttgcacaaagatggaaaggagaatcgcttcgagagagta 316
Query: 355 tcaagcgacatgagcattttcttgc 379
| |||||||| ||||| ||||||||
Sbjct: 317 ttaagcgacacgagcactttcttgc 341
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
Length = 79259
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||||
Sbjct: 69103 ggttaataagtactatgaccttgctactagcttttatgagtacggatggggagaatcctt 69044
Query: 311 ccactttgc 319
||| |||||
Sbjct: 69043 ccattttgc 69035
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 68753 gatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 68707
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||||
Sbjct: 4238873 ggttaataagtactatgaccttgctactagcttttatgagtacggatggggagaatcctt 4238814
Query: 311 ccactttgc 319
||| |||||
Sbjct: 4238813 ccattttgc 4238805
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 4238523 gatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 4238477
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 251 ggttaataaatactatgatcttgccactagcttctatgagtatggttggggtgaatcctt 310
||||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||||
Sbjct: 4425900 ggttaataagtactatgaccttgctactagcttttatgagtacggatggggagaatcctt 4425841
Query: 311 ccactttgc 319
||| |||||
Sbjct: 4425840 ccattttgc 4425832
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 417 gatgtgggctgtggaataggtggaccactgagagaaattgcaagatt 463
||||| || |||||||| |||||||| |||| ||||||||||||||
Sbjct: 4425550 gatgtaggatgtggaattggtggaccgttgagggaaattgcaagatt 4425504
>gb|BE527299.1|BE527299 M68G13STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600036152R1 5', mRNA sequence
Length = 247
Score = 52.0 bits (26), Expect = 1e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 175 ccgtcgatgagtatgagaaatatcatggatactatggagggaaggaggaagcaaggaagt 234
||||||| |||||||| ||||||||| | | ||||||| || ||||||| || ||
Sbjct: 154 ccgtcgaaaagtatgagcaatatcatgtcttccatggaggaaacgaggaagagagaaaag 213
Query: 235 ccaactatactgatatggttaataaatactatga 268
|||| |||||||| ||||||||||| ||||||||
Sbjct: 214 ccaattatactgacatggttaataagtactatga 247
>gb|AV557319.1|AV557319 AV557319 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ065f05F 3', mRNA sequence
Length = 538
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 552 acatgtgattttgtcaaggcggacttcatgaagatgcc 589
|||||| | ||||||||||| |||||||||||||||||
Sbjct: 2 acatgtaactttgtcaaggctgacttcatgaagatgcc 39
>gb|AV821091.1|AV821091 AV821091 RAFL2 Arabidopsis thaliana cDNA clone RAFL02-01-C03 5',
mRNA sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 606 aagatgccgttcgatgaaaacacgtttga 634
>gb|CB262826.1|CB262826 46-E8862-008-010-E14-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767E1410Q 5-PRIME, mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 104 aagatgccgttcgatgaaaacacgtttga 132
>gb|CB264457.1|CB264457 61-E014996-035-003-J16-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000J163Q 5-PRIME, mRNA sequence
Length = 636
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 594 agatgccgttcgatgacaaca 614
>gb|CF652694.1|CF652694 71-L020166-066-001-N17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001N171Q 5-PRIME, mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 571 agatgccgttcgatgacaaca 591
>gb|BX838992.1|BX838992 BX838992 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS54ZA02 5PRIM, mRNA
sequence
Length = 1079
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 659 aagatgccgttcgatgaaaacacgtttga 687
>gb|BX841210.1|BX841210 BX841210 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB25ZA12 5PRIM, mRNA sequence
Length = 1144
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 555 agatgccgttcgatgacaaca 575
>gb|AV551735.1|AV551735 AV551735 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ130a08R 5', mRNA sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 380 agatgccgttcgatgacaaca 400
>gb|CF774308.1|CF774308 AG_FSL_30G11 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 30G11, mRNA sequence
Length = 167
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 81 agatgccgttcgatgacaaca 61
>gb|CK118763.1|CK118763 216b06.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B06216
5-PRIME, mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 307 agatgccgttcgatgacaaca 327
>gb|CK120373.1|CK120373 218n19.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011N19218
5-PRIME, mRNA sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 307 agatgccgttcgatgacaaca 327
>gb|CB254984.1|CB254984 53-E012998-019-004-I14-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768I144Q 5-PRIME, mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 567 agatgccgttcgatgacaaca 587
>gb|BP836692.1|BP836692 BP836692 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-17-E17 5',
mRNA sequence
Length = 258
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 495 aacgaataccagataaccaggggaaagga 523
|||||||||||||||||||| || |||||
Sbjct: 51 aacgaataccagataaccagaggcaagga 79
>emb|X89867.1|ATSTERMET A.thaliana mRNA for sterol-C-methyltransferase
Length = 1421
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 593 agatgccgttcgatgacaaca 613
>gb|U71400.1|ATU71400 Arabidopsis thaliana
S-adenosyl-methionine-sterol-C-methyltransferase mRNA,
complete cds
Length = 1249
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 568 aagatgccgttcgatgaaaacacgtttga 596
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 7039317 agatgccgttcgatgacaaca 7039297
>gb|AF375397.1| Arabidopsis thaliana At1g76090/T23E18_40 mRNA, complete cds
Length = 1302
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 605 aagatgccgttcgatgaaaacacgtttga 633
>gb|AY113031.1| Arabidopsis thaliana At1g76090/T23E18_40 mRNA, complete cds
Length = 1080
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 550 aagatgccgttcgatgaaaacacgtttga 578
>gb|AY128389.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At1g20330)
mRNA, complete cds
Length = 1315
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 641 agatgccgttcgatgacaaca 661
>gb|AF332417.1| Arabidopsis thaliana putative sterol-C-methyltransferase
(At1g20330) mRNA, complete cds
Length = 1086
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 551 agatgccgttcgatgacaaca 571
>gb|AY046042.1| Arabidopsis thaliana putative sterol-C-methyltransferase
(At1g20330) mRNA, complete cds
Length = 1433
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 622 agatgccgttcgatgacaaca 642
>gb|AY113961.1| Arabidopsis thaliana putative sterol-C-methyltransferase
(At1g20330) mRNA, complete cds
Length = 1117
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 551 agatgccgttcgatgacaaca 571
>emb|AX507120.1| Sequence 1815 from Patent WO0216655
Length = 1080
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 550 aagatgccgttcgatgaaaacacgtttga 578
>emb|AX507161.1| Sequence 1856 from Patent WO0216655
Length = 1086
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 551 agatgccgttcgatgacaaca 571
>gb|BT000750.1| Arabidopsis thaliana clone RAFL09-74-F07 (R19368) putative
sterol-C-methyltransferase (At1g20330) mRNA, complete
cds
Length = 1412
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 608 agatgccgttcgatgacaaca 628
>gb|BT002093.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At1g20330)
mRNA, complete cds
Length = 1123
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 583 agatgccgttcgatgacaaca 603
|||||||||||||||||||||
Sbjct: 551 agatgccgttcgatgacaaca 571
>emb|AX573143.1| Sequence 20 from Patent WO02061072
Length = 1249
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 aagatgccgttcgatgacaacacttttga 610
||||||||||||||||| ||||| |||||
Sbjct: 568 aagatgccgttcgatgaaaacacgtttga 596
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259,069
Number of Sequences: 1013581
Number of extensions: 259069
Number of successful extensions: 19010
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18208
Number of HSP's gapped (non-prelim): 787
length of query: 614
length of database: 908,940,872
effective HSP length: 20
effective length of query: 594
effective length of database: 888,669,252
effective search space: 527869535688
effective search space used: 527869535688
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)