BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405341.2.2
(1164 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX815242.1|CNS0ADXD Arabidopsis thaliana Full-length cD... 165 2e-038
ref|NM_102881.3| Arabidopsis thaliana ATP binding / protein... 165 2e-038
ref|NM_129116.3| Arabidopsis thaliana kinase AT2G35620 mRNA... 145 2e-032
gb|BX834116.1|BX834116 BX834116 Arabidopsis thaliana Adult ... 133 8e-029
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 121 3e-025
gb|AC027135.6|AC027135 Arabidopsis thaliana chromosome 1 BA... 121 3e-025
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 121 3e-025
gb|AC006068.4| Arabidopsis thaliana chromosome 2 clone T20F... 119 1e-024
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 119 1e-024
gb|T76718.1|T76718 11496 Lambda-PRL2 Arabidopsis thaliana c... 94 6e-017
gb|AI994419.1|AI994419 701496286 A. thaliana, Ohio State cl... 84 6e-014
gb|AQ964178.1|AQ964178 LERGT72TF LERG Arabidopsis thaliana ... 54 6e-005
gb|AQ964179.1|AQ964179 LERGT72TR LERG Arabidopsis thaliana ... 54 6e-005
gb|CW844503.1|CW844503 GT11066.Ds3.11.04.2002.jw57.679 Arab... 54 6e-005
gb|BP827144.1|BP827144 BP827144 RAFL19 Arabidopsis thaliana... 54 6e-005
gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis tha... 54 6e-005
gb|AC004133.3|AC004133 Genomic sequence for Arabidopsis tha... 54 6e-005
ref|NM_102307.1| Arabidopsis thaliana ATP binding / protein... 54 6e-005
gb|CL470865.1|CL470865 SAIL_150_A08.v1 SAIL Collection Arab... 50 9e-004
gb|CB265059.1|CB265059 10-E014995-035-003-D03-T7R MPIZ-ADIS... 50 9e-004
ref|NM_104492.2| Arabidopsis thaliana ATP binding / protein... 48 0.003
gb|AY203216.1|AY203216 AY203216 Arabidopsis thaliana Landsb... 44 0.054
gb|BP599856.1|BP599856 BP599856 RAFL16 Arabidopsis thaliana... 44 0.054
gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24 44 0.054
emb|AX412369.1| Sequence 133 from Patent WO0222675 44 0.054
gb|AY059761.1| Arabidopsis thaliana At1g67720 mRNA sequence 44 0.054
emb|AX505974.1| Sequence 669 from Patent WO0216655 44 0.054
gb|BT004058.1| Arabidopsis thaliana clone RAFL15-09-P09 (R2... 44 0.054
emb|AX651677.1| Sequence 500 from Patent WO03000898 44 0.054
gb|AC005405.1|AC005405 BAC F18A17 from chromosome V contain... 44 0.054
gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis tha... 44 0.054
emb|BX831513.1|CNS0A1ME Arabidopsis thaliana Full-length cD... 44 0.054
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.054
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 44 0.054
ref|NM_105440.1| Arabidopsis thaliana kinase/ protein bindi... 44 0.054
ref|NM_122494.2| Arabidopsis thaliana kinase AT5G25930 mRNA... 44 0.054
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.054
gb|CC455272.1|CC455272 SALK_080073.23.70.n Arabidopsis thal... 42 0.21
gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 ... 42 0.21
ref|NM_100815.2| Arabidopsis thaliana ATP binding / kinase/... 42 0.21
>emb|BX815242.1|CNS0ADXD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS45ZG11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2407
Score = 165 bits (83), Expect = 2e-038
Identities = 221/267 (82%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgt 406
|||||||| ||||| || || || |||||||| |||||||| ||||| || |||||||||
Sbjct: 1522 ggagctgcgaaagggttatcatatttgcatcatgattgttctcctcggattatacatcgt 1581
Query: 407 gatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgtatcagacttt 466
||||| |||||||||||||| |||||||| |||| | | ||||| || ||||| || |||
Sbjct: 1582 gatataaagtcgagcaacattttgcttgatggcaatctcgaggcacgggtatcggatttt 1641
Query: 467 ggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagttgcaggaaca 526
|| || || ||| | || || ||||||||||| |||||||| || || |||||||| |||
Sbjct: 1642 ggtctagccaagttgttggaagacgaagaatctcatatcacaaccattgttgcaggcaca 1701
Query: 527 tttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaagaccgatgtc 586
||||| || || || ||||| |||||||| ||| ||||| || ||||| ||||||||
Sbjct: 1702 tttgggtacctagctccagaatatatgcaaagtggtagagcaactgagaaaaccgatgta 1761
Query: 587 tacagttttggggttctggtacttgaa 613
||||||||||||||| |||| ||||||
Sbjct: 1762 tacagttttggggttttggttcttgaa 1788
Score = 42.1 bits (21), Expect = 0.21
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 64 ggaggcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaa 123
|||||||| ||||| || ||||| ||| |||||||||||||| ||| |||| |||||
Sbjct: 1237 ggaggctttggaacggtgtataagctggccatggatgatggcaaagtctttgcattgaag 1296
Query: 124 agaat 128
|||||
Sbjct: 1297 agaat 1301
>ref|NM_102881.3| Arabidopsis thaliana ATP binding / protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT1G31420 mRNA, complete cds
Length = 2434
Score = 165 bits (83), Expect = 2e-038
Identities = 221/267 (82%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgt 406
|||||||| ||||| || || || |||||||| |||||||| ||||| || |||||||||
Sbjct: 1520 ggagctgcgaaagggttatcatatttgcatcatgattgttctcctcggattatacatcgt 1579
Query: 407 gatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgtatcagacttt 466
||||| |||||||||||||| |||||||| |||| | | ||||| || ||||| || |||
Sbjct: 1580 gatataaagtcgagcaacattttgcttgatggcaatctcgaggcacgggtatcggatttt 1639
Query: 467 ggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagttgcaggaaca 526
|| || || ||| | || || ||||||||||| |||||||| || || |||||||| |||
Sbjct: 1640 ggtctagccaagttgttggaagacgaagaatctcatatcacaaccattgttgcaggcaca 1699
Query: 527 tttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaagaccgatgtc 586
||||| || || || ||||| |||||||| ||| ||||| || ||||| ||||||||
Sbjct: 1700 tttgggtacctagctccagaatatatgcaaagtggtagagcaactgagaaaaccgatgta 1759
Query: 587 tacagttttggggttctggtacttgaa 613
||||||||||||||| |||| ||||||
Sbjct: 1760 tacagttttggggttttggttcttgaa 1786
Score = 42.1 bits (21), Expect = 0.21
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 64 ggaggcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaa 123
|||||||| ||||| || ||||| ||| |||||||||||||| ||| |||| |||||
Sbjct: 1235 ggaggctttggaacggtgtataagctggccatggatgatggcaaagtctttgcattgaag 1294
Query: 124 agaat 128
|||||
Sbjct: 1295 agaat 1299
>ref|NM_129116.3| Arabidopsis thaliana kinase AT2G35620 mRNA, complete cds
Length = 2010
Score = 145 bits (73), Expect = 2e-032
Identities = 412/521 (79%), Gaps = 3/521 (0%)
Strand = Plus / Plus
Query: 94 atggatgatggcaatgtccttgctttgaaaagaatagtgaaaacaaatgaagggtctaga 153
||||| ||||||||||| |||| |||||||||| || || ||||||| ||| | ||
Sbjct: 967 atggacgatggcaatgtttttgcgctgaaaagaattgttaagttaaatgaa-ggttttga 1025
Query: 154 tcggttctttgatagagaacttgagatattgggaagtgttaaacatcgttacttggtcaa 213
|||||| ||||| || || |||||||| | || || | |||||||||||| | || ||
Sbjct: 1026 tcggttttttgaaagggagcttgagattcttgggagcatcaaacatcgttaccttgtgaa 1085
Query: 214 tcttcgtggttattgcaactctccttcatcaaaacttttgatatatgattatcttcaagg 273
||| ||||| || ||||| || || ||||||| ||| || |||||||||| |||| ||
Sbjct: 1086 tctacgtggatactgcaattcacccacatcaaagcttctgctatatgattaccttcctgg 1145
Query: 274 tggaagcctggatgaagtgctgcatga-aaagtctgaacagttggattgggatgcacgta 332
||| ||||| ||||||| || ||| | | || | || ||| ||||||||||| | ||
Sbjct: 1146 tggtagccttgatgaagctctacataagagaggc-gagcagctggattgggattcgcgag 1204
Query: 333 ttaacatcatacttggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcctc 392
|||| |||||| | ||||| |||||||| ||| | ||||||||||| |||||||| |||
Sbjct: 1205 ttaatatcataataggagcggcaaaagggttggcatacttgcatcatgattgttctccta 1264
Query: 393 gaataatacatcgtgatatcaagtcgagcaacatcttgcttgacggcagttttgaggccc 452
| || ||||| |||||||| || || ||||||||||| || || || | | | ||||| |
Sbjct: 1265 ggattatacaccgtgatataaaatcaagcaacatcttactggatggaaatctggaggctc 1324
Query: 453 gcgtatcagactttggacttgcaaagcttttagaggacgaagaatcccatatcactacaa 512
| |||||||||||||| ||||| ||| | ||||||||||||||||| ||||| || || |
Sbjct: 1325 gggtatcagactttgggcttgccaagttgttagaggacgaagaatctcatattacaacca 1384
Query: 513 tagttgcaggaacatttggttatcttgcgccagagtatatgcagtttggcagagccaccg 572
| |||||||| ||||| ||||| | || |||||||||||||| || ||||| || |
Sbjct: 1385 ttgttgcaggcacattcggttacttggctccagagtatatgcaaagcggtagagcgactg 1444
Query: 573 agaagaccgatgtctacagttttggggttctggtacttgaa 613
|||| |||||||| ||||| || |||||| |||| ||||||
Sbjct: 1445 agaaaaccgatgtttacagcttcggggttttggttcttgaa 1485
>gb|BX834116.1|BX834116 BX834116 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS10ZB10 3PRIM, mRNA
sequence
Length = 889
Score = 133 bits (67), Expect = 8e-029
Identities = 199/243 (81%)
Strand = Plus / Minus
Query: 371 ttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatcttg 430
|||||||| ||||||| ||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 842 ttgcatcattattgttctcctcggattatacatcgtgatataaagtcgagcaacattttg 783
Query: 431 cttgacggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagaggac 490
||||| |||| | | ||||| || ||||| || |||| || || ||| | || || |||
Sbjct: 782 cttgatggcaatctcgaggcacgggtatcggatcttggtctagccaagttgttggaagac 723
Query: 491 gaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccagagtat 550
|||||||| |||||||| || || |||||||| |||||||| || || || ||||| |||
Sbjct: 722 gaagaatctcatatcacaaccattgttgcaggcacatttgggtacctagctccagaatat 663
Query: 551 atgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttctggtactt 610
||||| ||| ||||| || ||||| |||||||| ||||| ||||||||| |||| |||
Sbjct: 662 atgcaaagtggtagagcaactgagaaaaccgatgtatacagctttggggttttggttctt 603
Query: 611 gaa 613
|||
Sbjct: 602 gaa 600
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 121 bits (61), Expect = 3e-025
Identities = 154/185 (83%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgt 406
|||||||| ||||| || || || |||||||| |||||||| ||||| || |||||||||
Sbjct: 11261587 ggagctgcgaaagggttatcatatttgcatcatgattgttctcctcggattatacatcgt 11261646
Query: 407 gatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgtatcagacttt 466
||||| |||||||||||||| |||||||| |||| | | ||||| || ||||| || |||
Sbjct: 11261647 gatataaagtcgagcaacattttgcttgatggcaatctcgaggcacgggtatcggatttt 11261706
Query: 467 ggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagttgcaggaaca 526
|| || || ||| | || || ||||||||||| |||||||| || || |||||||| |||
Sbjct: 11261707 ggtctagccaagttgttggaagacgaagaatctcatatcacaaccattgttgcaggcaca 11261766
Query: 527 tttgg 531
|||||
Sbjct: 11261767 tttgg 11261771
Score = 54.0 bits (27), Expect = 6e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 563 agagccaccgagaagaccgatgtctacagttttggggttctggtacttgaa 613
||||| || ||||| |||||||| ||||||||||||||| |||| ||||||
Sbjct: 11261879 agagcaactgagaaaaccgatgtatacagttttggggttttggttcttgaa 11261929
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 8736467 ttgctggaacatttggttatcttgcaccagagtat 8736501
Score = 42.1 bits (21), Expect = 0.21
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 64 ggaggcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaa 123
|||||||| ||||| || ||||| ||| |||||||||||||| ||| |||| |||||
Sbjct: 11261227 ggaggctttggaacggtgtataagctggccatggatgatggcaaagtctttgcattgaag 11261286
Query: 124 agaat 128
|||||
Sbjct: 11261287 agaat 11261291
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 410 atcaagtcgagcaacatcttg 430
|||||||||||||||||||||
Sbjct: 3046128 atcaagtcgagcaacatcttg 3046108
>gb|AC027135.6|AC027135 Arabidopsis thaliana chromosome 1 BAC T8E3 genomic sequence, complete
sequence
Length = 80139
Score = 121 bits (61), Expect = 3e-025
Identities = 154/185 (83%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgt 406
|||||||| ||||| || || || |||||||| |||||||| ||||| || |||||||||
Sbjct: 15402 ggagctgcgaaagggttatcatatttgcatcatgattgttctcctcggattatacatcgt 15461
Query: 407 gatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgtatcagacttt 466
||||| |||||||||||||| |||||||| |||| | | ||||| || ||||| || |||
Sbjct: 15462 gatataaagtcgagcaacattttgcttgatggcaatctcgaggcacgggtatcggatttt 15521
Query: 467 ggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagttgcaggaaca 526
|| || || ||| | || || ||||||||||| |||||||| || || |||||||| |||
Sbjct: 15522 ggtctagccaagttgttggaagacgaagaatctcatatcacaaccattgttgcaggcaca 15581
Query: 527 tttgg 531
|||||
Sbjct: 15582 tttgg 15586
Score = 54.0 bits (27), Expect = 6e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 563 agagccaccgagaagaccgatgtctacagttttggggttctggtacttgaa 613
||||| || ||||| |||||||| ||||||||||||||| |||| ||||||
Sbjct: 15694 agagcaactgagaaaaccgatgtatacagttttggggttttggttcttgaa 15744
Score = 42.1 bits (21), Expect = 0.21
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 64 ggaggcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaa 123
|||||||| ||||| || ||||| ||| |||||||||||||| ||| |||| |||||
Sbjct: 15042 ggaggctttggaacggtgtataagctggccatggatgatggcaaagtctttgcattgaag 15101
Query: 124 agaat 128
|||||
Sbjct: 15102 agaat 15106
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 121 bits (61), Expect = 3e-025
Identities = 154/185 (83%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaaggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgt 406
|||||||| ||||| || || || |||||||| |||||||| ||||| || |||||||||
Sbjct: 11252787 ggagctgcgaaagggttatcatatttgcatcatgattgttctcctcggattatacatcgt 11252846
Query: 407 gatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgtatcagacttt 466
||||| |||||||||||||| |||||||| |||| | | ||||| || ||||| || |||
Sbjct: 11252847 gatataaagtcgagcaacattttgcttgatggcaatctcgaggcacgggtatcggatttt 11252906
Query: 467 ggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagttgcaggaaca 526
|| || || ||| | || || ||||||||||| |||||||| || || |||||||| |||
Sbjct: 11252907 ggtctagccaagttgttggaagacgaagaatctcatatcacaaccattgttgcaggcaca 11252966
Query: 527 tttgg 531
|||||
Sbjct: 11252967 tttgg 11252971
Score = 54.0 bits (27), Expect = 6e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 563 agagccaccgagaagaccgatgtctacagttttggggttctggtacttgaa 613
||||| || ||||| |||||||| ||||||||||||||| |||| ||||||
Sbjct: 11253079 agagcaactgagaaaaccgatgtatacagttttggggttttggttcttgaa 11253129
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 8736690 ttgctggaacatttggttatcttgcaccagagtat 8736724
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 572 gagaagaccgatgtctacagttttgg 597
||||||| ||||||||||||||||||
Sbjct: 25393969 gagaagagcgatgtctacagttttgg 25393994
Score = 42.1 bits (21), Expect = 0.21
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 64 ggaggcttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaa 123
|||||||| ||||| || ||||| ||| |||||||||||||| ||| |||| |||||
Sbjct: 11252427 ggaggctttggaacggtgtataagctggccatggatgatggcaaagtctttgcattgaag 11252486
Query: 124 agaat 128
|||||
Sbjct: 11252487 agaat 11252491
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 410 atcaagtcgagcaacatcttg 430
|||||||||||||||||||||
Sbjct: 3046308 atcaagtcgagcaacatcttg 3046288
>gb|AC006068.4| Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete
sequence
Length = 107436
Score = 119 bits (60), Expect = 1e-024
Identities = 180/220 (81%)
Strand = Plus / Plus
Query: 315 tggattgggatgcacgtattaacatcatacttggagctgcaaaaggcttgtcttacttgc 374
||||||||||| | || |||| |||||| | ||||| |||||||| ||| | |||||||
Sbjct: 82196 tggattgggattcgcgagttaatatcataataggagcggcaaaagggttggcatacttgc 82255
Query: 375 atcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatcttgcttg 434
|||| |||||||| ||| | || ||||| |||||||| || || ||||||||||| || |
Sbjct: 82256 atcatgattgttctcctaggattatacaccgtgatataaaatcaagcaacatcttactgg 82315
Query: 435 acggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagaggacgaag 494
| || | | | ||||| || |||||||||||||| ||||| ||| | |||||||||||||
Sbjct: 82316 atggaaatctggaggctcgggtatcagactttgggcttgccaagttgttagaggacgaag 82375
Query: 495 aatcccatatcactacaatagttgcaggaacatttggtta 534
|||| ||||| || || || |||||||| ||||| |||||
Sbjct: 82376 aatctcatattacaaccattgttgcaggcacattcggtta 82415
Score = 50.1 bits (25), Expect = 9e-004
Identities = 155/197 (78%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 94 atggatgatggcaatgtccttgctttgaaaagaatagtgaaaacaaatgaagggtctaga 153
||||| ||||||||||| |||| |||||||||| || || ||||||| ||| | ||
Sbjct: 81897 atggacgatggcaatgtttttgcgctgaaaagaattgttaagttaaatgaa-ggttttga 81955
Query: 154 tcggttctttgatagagaacttgagatattgggaagtgttaaacatcgttacttggtcaa 213
|||||| ||||| || || |||||||| | || || | |||||||||||| | || ||
Sbjct: 81956 tcggttttttgaaagggagcttgagattcttgggagcatcaaacatcgttaccttgtgaa 82015
Query: 214 tcttcgtggttattgcaactctccttcatcaaaacttttgatatatgattatcttcaagg 273
||| ||||| || ||||| || || ||||||| ||| || |||||||||| |||| ||
Sbjct: 82016 tctacgtggatactgcaattcacccacatcaaagcttctgctatatgattaccttcctgg 82075
Query: 274 tggaagcctggatgaag 290
||| ||||| |||||||
Sbjct: 82076 tggtagccttgatgaag 82092
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 119 bits (60), Expect = 1e-024
Identities = 180/220 (81%)
Strand = Plus / Minus
Query: 315 tggattgggatgcacgtattaacatcatacttggagctgcaaaaggcttgtcttacttgc 374
||||||||||| | || |||| |||||| | ||||| |||||||| ||| | |||||||
Sbjct: 14969020 tggattgggattcgcgagttaatatcataataggagcggcaaaagggttggcatacttgc 14968961
Query: 375 atcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatcttgcttg 434
|||| |||||||| ||| | || ||||| |||||||| || || ||||||||||| || |
Sbjct: 14968960 atcatgattgttctcctaggattatacaccgtgatataaaatcaagcaacatcttactgg 14968901
Query: 435 acggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagaggacgaag 494
| || | | | ||||| || |||||||||||||| ||||| ||| | |||||||||||||
Sbjct: 14968900 atggaaatctggaggctcgggtatcagactttgggcttgccaagttgttagaggacgaag 14968841
Query: 495 aatcccatatcactacaatagttgcaggaacatttggtta 534
|||| ||||| || || || |||||||| ||||| |||||
Sbjct: 14968840 aatctcatattacaaccattgttgcaggcacattcggtta 14968801
Score = 50.1 bits (25), Expect = 9e-004
Identities = 155/197 (78%), Gaps = 1/197 (0%)
Strand = Plus / Minus
Query: 94 atggatgatggcaatgtccttgctttgaaaagaatagtgaaaacaaatgaagggtctaga 153
||||| ||||||||||| |||| |||||||||| || || ||||||| ||| | ||
Sbjct: 14969319 atggacgatggcaatgtttttgcgctgaaaagaattgttaagttaaatgaa-ggttttga 14969261
Query: 154 tcggttctttgatagagaacttgagatattgggaagtgttaaacatcgttacttggtcaa 213
|||||| ||||| || || |||||||| | || || | |||||||||||| | || ||
Sbjct: 14969260 tcggttttttgaaagggagcttgagattcttgggagcatcaaacatcgttaccttgtgaa 14969201
Query: 214 tcttcgtggttattgcaactctccttcatcaaaacttttgatatatgattatcttcaagg 273
||| ||||| || ||||| || || ||||||| ||| || |||||||||| |||| ||
Sbjct: 14969200 tctacgtggatactgcaattcacccacatcaaagcttctgctatatgattaccttcctgg 14969141
Query: 274 tggaagcctggatgaag 290
||| ||||| |||||||
Sbjct: 14969140 tggtagccttgatgaag 14969124
>gb|T76718.1|T76718 11496 Lambda-PRL2 Arabidopsis thaliana cDNA clone 149P15T7, mRNA
sequence
Length = 466
Score = 93.7 bits (47), Expect = 6e-017
Identities = 139/170 (81%)
Strand = Plus / Plus
Query: 488 gacgaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccagag 547
||||||||||| |||||||| || || |||||||| |||||||| || || || |||||
Sbjct: 60 gacgaagaatctcatatcacaaccattgttgcaggcacatttgggtacctagctccagaa 119
Query: 548 tatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttctggta 607
|||||||| ||| ||||| || |||| |||||||| ||||||||||||||| ||||
Sbjct: 120 tatatgcaaagtggtagagcaactnagaaaaccgatgtatacagttttggggttttggtt 179
Query: 608 cttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaa 657
|||||| | | || ||||| |||| |||||||| |||||||| |||||
Sbjct: 180 cttgaagtcttgagtggaaaaagaccaaccgatgcttccttcatcgagaa 229
>gb|AI994419.1|AI994419 701496286 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701496286, mRNA sequence
Length = 443
Score = 83.8 bits (42), Expect = 6e-014
Identities = 138/170 (81%)
Strand = Plus / Plus
Query: 488 gacgaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccagag 547
||||||||||| || ||||| || || |||||||| |||||||| || || || |||||
Sbjct: 60 gacgaagaatctcagatcacaaccattgttgcaggcacatttgggtacctagctccagaa 119
Query: 548 tatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttctggta 607
|||||||| ||| ||||| || ||||| |||||||| ||||||| ||||||| ||||
Sbjct: 120 tatatgcaaagtggtagagcaactgagaaaaccgatgtatacagttatggggttttggtt 179
Query: 608 cttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaa 657
|||||| | | || ||||| |||| |||||||| |||||||| |||||
Sbjct: 180 cttgaagtcttgagtggaaaaagaccaaccgatgcttccttcatcgagaa 229
>gb|AQ964178.1|AQ964178 LERGT72TF LERG Arabidopsis thaliana genomic clone LERGT72, DNA
sequence
Length = 657
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 485 ttgctggaacatttggttatcttgcaccagagtat 519
>gb|AQ964179.1|AQ964179 LERGT72TR LERG Arabidopsis thaliana genomic clone LERGT72, DNA
sequence
Length = 653
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 170 ttgctggaacatttggttatcttgcaccagagtat 136
>gb|CW844503.1|CW844503 GT11066.Ds3.11.04.2002.jw57.679 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT11066, DNA sequence
Length = 679
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 599 ttgctggaacatttggttatcttgcaccagagtat 565
>gb|BP827144.1|BP827144 BP827144 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-74-I22 5',
mRNA sequence
Length = 381
Score = 54.0 bits (27), Expect = 6e-005
Identities = 155/195 (79%), Gaps = 2/195 (1%)
Strand = Plus / Plus
Query: 194 aaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaacttttg 253
|||||||||||| | || ||||| ||||| || ||||| || || ||||||| ||| ||
Sbjct: 188 aaacatcgttaccttgtgaatctacgtggatactgcaattcacccacatcaaagcttctg 247
Query: 254 atatatgattatcttcaaggtggaagcctggatgaagtgctgcatgaaa-agtctgaaca 312
|||||||||| |||| ||||| ||||| ||||||| || ||| | | || | || ||
Sbjct: 248 ctatatgattaccttcctggtggtagccttgatgaagctctacataagagaggc-gagca 306
Query: 313 gttggattgggatgcacgtattaacatcatacttggagctgcaaaaggcttgtcttactt 372
| ||||||||||| | || |||| |||||| | ||||| |||||||| ||| | |||||
Sbjct: 307 gctggattgggattcgcgagttaatatcataataggagcggcaaaagggttggcatactt 366
Query: 373 gcatcacgattgttc 387
|||||| ||||||||
Sbjct: 367 gcatcatgattgttc 381
>gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I,
complete sequence
Length = 99392
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 97536 ttgctggaacatttggttatcttgcaccagagtat 97570
>gb|AC004133.3|AC004133 Genomic sequence for Arabidopsis thaliana BAC F5A9 from chromosome I,
complete sequence
Length = 105863
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 94640 ttgctggaacatttggttatcttgcaccagagtat 94606
>ref|NM_102307.1| Arabidopsis thaliana ATP binding / protein binding / protein kinase/
protein serine/threonine kinase/ protein-tyrosine kinase
AT1G24650 mRNA, complete cds
Length = 2661
Score = 54.0 bits (27), Expect = 6e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 516 ttgcaggaacatttggttatcttgcgccagagtat 550
|||| |||||||||||||||||||| |||||||||
Sbjct: 2135 ttgctggaacatttggttatcttgcaccagagtat 2169
>gb|CL470865.1|CL470865 SAIL_150_A08.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_150_A08.v1, DNA sequence
Length = 978
Score = 50.1 bits (25), Expect = 9e-004
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 194 aaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaacttttg 253
|||||||||||| | || ||||| ||||| || ||||| || || ||||||| ||| ||
Sbjct: 247 aaacatcgttaccttgtgaatctacgtggatactgcaattcacccacatcaaagcttctg 188
Query: 254 atatatgattatcttcaaggtggaagcctggatgaag 290
|||||||||| |||| ||||| ||||| |||||||
Sbjct: 187 ctatatgattaccttcctggtggtagccttgatgaag 151
>gb|CB265059.1|CB265059 10-E014995-035-003-D03-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000D033Q 5-PRIME, mRNA sequence
Length = 674
Score = 50.1 bits (25), Expect = 9e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 527 tttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaagaccgatgtc 586
||||| |||||||| ||||||||| |||| ||| ||||| || |||||| | ||||||
Sbjct: 84 tttggctatcttgctccagagtatctgcaaaatgggagagcgacggagaagtctgatgtc 143
Query: 587 tacagttttggggttct 603
||||| ||||| |||||
Sbjct: 144 tacagctttggagttct 160
>ref|NM_104492.2| Arabidopsis thaliana ATP binding / protein binding / protein kinase/
protein serine/threonine kinase/ protein-tyrosine kinase
AT1G56140 mRNA, complete cds
Length = 3317
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 515 gttgcaggaacatttggttatcttgcgccagagtat 550
|||||||| ||| |||| ||||||||||||||||||
Sbjct: 2638 gttgcagggacaattgggtatcttgcgccagagtat 2673
>gb|AY203216.1|AY203216 AY203216 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone GT8740.Ds5.01.23.01.JU79.b.674, DNA
sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 67 atacatagagatgtcaagtcgagtaacatcttgcttga 104
>gb|BP599856.1|BP599856 BP599856 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-43-K22 3',
mRNA sequence
Length = 414
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 62 atacatagagatgtcaagtcgagtaacatcttgcttga 25
>gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24
Length = 127053
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 92806 atacatagagatgtcaagtcgagtaacatcttgcttga 92769
>emb|AX412369.1| Sequence 133 from Patent WO0222675
Length = 3018
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 2446 atacatagagatgtcaagtcgagtaacatcttgcttga 2483
>gb|AY059761.1| Arabidopsis thaliana At1g67720 mRNA sequence
Length = 3347
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 572 gagaagaccgatgtctacagttttgg 597
||||||| ||||||||||||||||||
Sbjct: 2679 gagaagagcgatgtctacagttttgg 2704
>emb|AX505974.1| Sequence 669 from Patent WO0216655
Length = 3018
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 2446 atacatagagatgtcaagtcgagtaacatcttgcttga 2483
>gb|BT004058.1| Arabidopsis thaliana clone RAFL15-09-P09 (R20481) putative receptor
protein kinase (At5g25930) mRNA, complete cds
Length = 3285
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 2532 atacatagagatgtcaagtcgagtaacatcttgcttga 2569
>emb|AX651677.1| Sequence 500 from Patent WO03000898
Length = 3018
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 2446 atacatagagatgtcaagtcgagtaacatcttgcttga 2483
>gb|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete
sequence
Length = 94362
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 86235 atacatagagatgtcaagtcgagtaacatcttgcttga 86272
>gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis thaliana BAC F12A21 from chromosome I,
complete sequence
Length = 114190
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 572 gagaagaccgatgtctacagttttgg 597
||||||| ||||||||||||||||||
Sbjct: 53058 gagaagagcgatgtctacagttttgg 53033
>emb|BX831513.1|CNS0A1ME Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH11ZG05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3210
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 2506 atacatagagatgtcaagtcgagtaacatcttgcttga 2543
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 8602256 atacatagagatgtcaagtcgagtaacatcttgcttga 8602219
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 8543698 atacatagagatgtcaagtcgagtaacatcttgcttga 8543735
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 572 gagaagaccgatgtctacagttttgg 597
||||||| ||||||||||||||||||
Sbjct: 9631622 gagaagagcgatgtctacagttttgg 9631647
>ref|NM_105440.1| Arabidopsis thaliana kinase/ protein binding / protein kinase
AT1G67720 mRNA, complete cds
Length = 3160
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 572 gagaagaccgatgtctacagttttgg 597
||||||| ||||||||||||||||||
Sbjct: 2509 gagaagagcgatgtctacagttttgg 2534
>ref|NM_122494.2| Arabidopsis thaliana kinase AT5G25930 mRNA, complete cds
Length = 3104
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 2532 atacatagagatgtcaagtcgagtaacatcttgcttga 2569
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 398 atacatcgtgatatcaagtcgagcaacatcttgcttga 435
|||||| | ||| |||||||||| ||||||||||||||
Sbjct: 9053328 atacatagagatgtcaagtcgagtaacatcttgcttga 9053365
>gb|CC455272.1|CC455272 SALK_080073.23.70.n Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_080073.23.70.n,
DNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.21
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 563 agagccaccgagaagaccgatgtctacagttttgggg 599
||||| || ||||| |||||||| |||||||||||||
Sbjct: 91 agagcaactgagaaaaccgatgtatacagttttgggg 127
>gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains
phyA marker, complete sequence
Length = 95865
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 410 atcaagtcgagcaacatcttg 430
|||||||||||||||||||||
Sbjct: 27909 atcaagtcgagcaacatcttg 27889
>ref|NM_100815.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT1G09440 mRNA, complete cds
Length = 1401
Score = 42.1 bits (21), Expect = 0.21
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 410 atcaagtcgagcaacatcttg 430
|||||||||||||||||||||
Sbjct: 850 atcaagtcgagcaacatcttg 870
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 586,127
Number of Sequences: 1013581
Number of extensions: 586127
Number of successful extensions: 43616
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40768
Number of HSP's gapped (non-prelim): 2844
length of query: 1164
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1144
effective length of database: 888,669,252
effective search space: 1016637624288
effective search space used: 1016637624288
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)