BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.2
(616 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV545118.1|AV545118 AV545118 Arabidopsis thaliana roots ... 105 9e-021
gb|AV556752.1|AV556752 AV556752 Arabidopsis thaliana green ... 105 9e-021
gb|AV563562.1|AV563562 AV563562 Arabidopsis thaliana green ... 105 9e-021
gb|AF424576.1|AF424576 Arabidopsis thaliana AT3g29360/MUO10... 105 9e-021
dbj|AP001309.1| Arabidopsis thaliana genomic DNA, chromosom... 105 9e-021
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 105 9e-021
gb|BT021126.1| Arabidopsis thaliana At3g29360 gene, complet... 105 9e-021
ref|NM_113861.2| Arabidopsis thaliana UDP-glucose 6-dehydro... 105 9e-021
ref|NM_001035715.1| Arabidopsis thaliana UDP-glucose 6-dehy... 105 9e-021
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 105 9e-021
gb|AV792950.1|AV792950 AV792950 RAFL7 Arabidopsis thaliana ... 103 4e-020
gb|AI999756.1|AI999756 701557309 A. thaliana, Columbia Col-... 100 5e-019
gb|AV791275.1|AV791275 AV791275 RAFL7 Arabidopsis thaliana ... 100 5e-019
gb|AV819945.1|AV819945 AV819945 RAFL11 Arabidopsis thaliana... 100 5e-019
gb|BP593999.1|BP593999 BP593999 RAFL15 Arabidopsis thaliana... 100 5e-019
gb|BP606879.1|BP606879 BP606879 RAFL16 Arabidopsis thaliana... 100 5e-019
gb|BP785119.1|BP785119 BP785119 RAFL7 Arabidopsis thaliana ... 100 5e-019
gb|BP787058.1|BP787058 BP787058 RAFL7 Arabidopsis thaliana ... 100 5e-019
gb|AY088902.1| Arabidopsis thaliana clone 9930 mRNA, comple... 98 2e-018
gb|AV536531.1|AV536531 AV536531 Arabidopsis thaliana liquid... 94 3e-017
gb|BP584642.1|BP584642 BP584642 RAFL14 Arabidopsis thaliana... 92 1e-016
gb|AV554480.1|AV554480 AV554480 Arabidopsis thaliana roots ... 90 5e-016
gb|AV566931.1|AV566931 AV566931 Arabidopsis thaliana green ... 90 5e-016
gb|BP782998.1|BP782998 BP782998 RAFL7 Arabidopsis thaliana ... 88 2e-015
gb|BP592566.1|BP592566 BP592566 RAFL15 Arabidopsis thaliana... 84 3e-014
gb|BP635173.1|BP635173 BP635173 RAFL17 Arabidopsis thaliana... 84 3e-014
gb|BP610312.1|BP610312 BP610312 RAFL16 Arabidopsis thaliana... 82 1e-013
gb|BP618854.1|BP618854 BP618854 RAFL16 Arabidopsis thaliana... 80 5e-013
gb|BP790002.1|BP790002 BP790002 RAFL7 Arabidopsis thaliana ... 80 5e-013
gb|BP592268.1|BP592268 BP592268 RAFL15 Arabidopsis thaliana... 76 8e-012
gb|BP794766.1|BP794766 BP794766 RAFL7 Arabidopsis thaliana ... 76 8e-012
gb|AV817872.1|AV817872 AV817872 RAFL9 Arabidopsis thaliana ... 68 2e-009
gb|AV538587.1|AV538587 AV538587 Arabidopsis thaliana roots ... 68 2e-009
gb|AV541943.1|AV541943 AV541943 Arabidopsis thaliana roots ... 68 2e-009
gb|AV542896.1|AV542896 AV542896 Arabidopsis thaliana roots ... 68 2e-009
gb|AV547150.1|AV547150 AV547150 Arabidopsis thaliana roots ... 68 2e-009
gb|AV549412.1|AV549412 AV549412 Arabidopsis thaliana roots ... 68 2e-009
gb|AV555612.1|AV555612 AV555612 Arabidopsis thaliana green ... 68 2e-009
gb|AV555633.1|AV555633 AV555633 Arabidopsis thaliana green ... 68 2e-009
gb|AV561460.1|AV561460 AV561460 Arabidopsis thaliana green ... 68 2e-009
gb|AV566156.1|AV566156 AV566156 Arabidopsis thaliana green ... 68 2e-009
gb|AV567064.1|AV567064 AV567064 Arabidopsis thaliana green ... 68 2e-009
gb|BP564042.1|BP564042 BP564042 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP565252.1|BP565252 BP565252 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP566061.1|BP566061 BP566061 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP572018.1|BP572018 BP572018 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP576887.1|BP576887 BP576887 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP581447.1|BP581447 BP581447 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP584381.1|BP584381 BP584381 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP591896.1|BP591896 BP591896 RAFL15 Arabidopsis thaliana... 68 2e-009
gb|BP594499.1|BP594499 BP594499 RAFL15 Arabidopsis thaliana... 68 2e-009
gb|BP600102.1|BP600102 BP600102 RAFL16 Arabidopsis thaliana... 68 2e-009
gb|BP606627.1|BP606627 BP606627 RAFL16 Arabidopsis thaliana... 68 2e-009
gb|BP606946.1|BP606946 BP606946 RAFL16 Arabidopsis thaliana... 68 2e-009
gb|BP789849.1|BP789849 BP789849 RAFL7 Arabidopsis thaliana ... 68 2e-009
gb|BT006380.1| Arabidopsis thaliana At5g39320 gene, complet... 68 2e-009
dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosom... 68 2e-009
ref|NM_123294.2| Arabidopsis thaliana UDP-glucose 6-dehydro... 68 2e-009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 68 2e-009
gb|AV802869.1|AV802869 AV802869 RAFL9 Arabidopsis thaliana ... 66 8e-009
gb|AV817612.1|AV817612 AV817612 RAFL9 Arabidopsis thaliana ... 66 8e-009
gb|AV818722.1|AV818722 AV818722 RAFL9 Arabidopsis thaliana ... 66 8e-009
gb|AV561795.1|AV561795 AV561795 Arabidopsis thaliana green ... 66 8e-009
gb|BP603949.1|BP603949 BP603949 RAFL16 Arabidopsis thaliana... 66 8e-009
gb|BP781798.1|BP781798 BP781798 RAFL7 Arabidopsis thaliana ... 66 8e-009
gb|BP792135.1|BP792135 BP792135 RAFL7 Arabidopsis thaliana ... 66 8e-009
gb|BP794950.1|BP794950 BP794950 RAFL7 Arabidopsis thaliana ... 66 8e-009
gb|BP795121.1|BP795121 BP795121 RAFL7 Arabidopsis thaliana ... 66 8e-009
gb|BP577030.1|BP577030 BP577030 RAFL14 Arabidopsis thaliana... 62 1e-007
gb|BP785971.1|BP785971 BP785971 RAFL7 Arabidopsis thaliana ... 62 1e-007
gb|AV540696.1|AV540696 AV540696 Arabidopsis thaliana roots ... 60 5e-007
gb|BP568523.1|BP568523 BP568523 RAFL14 Arabidopsis thaliana... 60 5e-007
gb|BP570637.1|BP570637 BP570637 RAFL14 Arabidopsis thaliana... 60 5e-007
gb|BP610400.1|BP610400 BP610400 RAFL16 Arabidopsis thaliana... 60 5e-007
gb|BP628504.1|BP628504 BP628504 RAFL17 Arabidopsis thaliana... 60 5e-007
gb|BP637079.1|BP637079 BP637079 RAFL19 Arabidopsis thaliana... 60 5e-007
gb|BP667896.1|BP667896 BP667896 RAFL21 Arabidopsis thaliana... 60 5e-007
gb|CW796426.1|CW796426 WiscDsLox436B7 Arabidopsis thaliana ... 58 2e-006
gb|AV545336.1|AV545336 AV545336 Arabidopsis thaliana roots ... 58 2e-006
gb|AV560648.1|AV560648 AV560648 Arabidopsis thaliana green ... 58 2e-006
gb|AV566403.1|AV566403 AV566403 Arabidopsis thaliana green ... 58 2e-006
gb|BP577402.1|BP577402 BP577402 RAFL14 Arabidopsis thaliana... 58 2e-006
gb|BP583801.1|BP583801 BP583801 RAFL14 Arabidopsis thaliana... 58 2e-006
gb|BP586933.1|BP586933 BP586933 RAFL15 Arabidopsis thaliana... 58 2e-006
gb|BP593947.1|BP593947 BP593947 RAFL15 Arabidopsis thaliana... 58 2e-006
gb|BP636679.1|BP636679 BP636679 RAFL19 Arabidopsis thaliana... 58 2e-006
gb|BP644036.1|BP644036 BP644036 RAFL19 Arabidopsis thaliana... 58 2e-006
gb|BP644152.1|BP644152 BP644152 RAFL19 Arabidopsis thaliana... 58 2e-006
gb|BP648172.1|BP648172 BP648172 RAFL19 Arabidopsis thaliana... 58 2e-006
gb|BP659687.1|BP659687 BP659687 RAFL19 Arabidopsis thaliana... 58 2e-006
gb|BP781110.1|BP781110 BP781110 RAFL7 Arabidopsis thaliana ... 58 2e-006
gb|BP786038.1|BP786038 BP786038 RAFL7 Arabidopsis thaliana ... 58 2e-006
gb|AI099773.1|AI099773 33926 Lambda-PRL2 Arabidopsis thalia... 56 7e-006
gb|AV808085.1|AV808085 AV808085 RAFL9 Arabidopsis thaliana ... 52 1e-004
gb|AV552560.1|AV552560 AV552560 Arabidopsis thaliana roots ... 52 1e-004
gb|BP583834.1|BP583834 BP583834 RAFL14 Arabidopsis thaliana... 52 1e-004
gb|BP646077.1|BP646077 BP646077 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|BP660554.1|BP660554 BP660554 RAFL21 Arabidopsis thaliana... 52 1e-004
gb|AU226212.1|AU226212 AU226212 RAFL14 Arabidopsis thaliana... 50 5e-004
gb|BP594921.1|BP594921 BP594921 RAFL15 Arabidopsis thaliana... 50 5e-004
gb|BP627791.1|BP627791 BP627791 RAFL17 Arabidopsis thaliana... 50 5e-004
gb|BP663427.1|BP663427 BP663427 RAFL21 Arabidopsis thaliana... 50 5e-004
gb|BP642794.1|BP642794 BP642794 RAFL19 Arabidopsis thaliana... 48 0.002
gb|BP669515.1|BP669515 BP669515 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BZ292018.1|BZ292018 SALK_122961.42.20.x Arabidopsis thal... 44 0.028
gb|AI998845.1|AI998845 701547096 A. thaliana, Columbia Col-... 44 0.028
gb|AV785229.1|AV785229 AV785229 RAFL6 Arabidopsis thaliana ... 44 0.028
gb|AV791268.1|AV791268 AV791268 RAFL7 Arabidopsis thaliana ... 44 0.028
gb|AV810707.1|AV810707 AV810707 RAFL9 Arabidopsis thaliana ... 44 0.028
gb|AV819150.1|AV819150 AV819150 RAFL11 Arabidopsis thaliana... 44 0.028
gb|AV535151.1|AV535151 AV535151 Arabidopsis thaliana flower... 44 0.028
gb|AV543899.1|AV543899 AV543899 Arabidopsis thaliana roots ... 44 0.028
gb|AV545316.1|AV545316 AV545316 Arabidopsis thaliana roots ... 44 0.028
gb|AV549693.1|AV549693 AV549693 Arabidopsis thaliana roots ... 44 0.028
gb|AV554391.1|AV554391 AV554391 Arabidopsis thaliana roots ... 44 0.028
gb|AV555725.1|AV555725 AV555725 Arabidopsis thaliana green ... 44 0.028
gb|AV555903.1|AV555903 AV555903 Arabidopsis thaliana green ... 44 0.028
gb|AV566422.1|AV566422 AV566422 Arabidopsis thaliana green ... 44 0.028
gb|BP594112.1|BP594112 BP594112 RAFL15 Arabidopsis thaliana... 44 0.028
gb|BP594118.1|BP594118 BP594118 RAFL15 Arabidopsis thaliana... 44 0.028
gb|BP594721.1|BP594721 BP594721 RAFL15 Arabidopsis thaliana... 44 0.028
gb|BP597510.1|BP597510 BP597510 RAFL15 Arabidopsis thaliana... 44 0.028
gb|BP601474.1|BP601474 BP601474 RAFL16 Arabidopsis thaliana... 44 0.028
gb|BP601737.1|BP601737 BP601737 RAFL16 Arabidopsis thaliana... 44 0.028
gb|BP611722.1|BP611722 BP611722 RAFL16 Arabidopsis thaliana... 44 0.028
gb|BP662223.1|BP662223 BP662223 RAFL21 Arabidopsis thaliana... 44 0.028
gb|BP667083.1|BP667083 BP667083 RAFL21 Arabidopsis thaliana... 44 0.028
gb|BP786642.1|BP786642 BP786642 RAFL7 Arabidopsis thaliana ... 44 0.028
gb|BP786700.1|BP786700 BP786700 RAFL7 Arabidopsis thaliana ... 44 0.028
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.028
gb|AY070758.1| Arabidopsis thaliana At1g26570/T1K7_6 mRNA, ... 44 0.028
gb|AY056200.1| Arabidopsis thaliana putative UDP-glucose de... 44 0.028
gb|AY143922.1| Arabidopsis thaliana At1g26570/T1K7_6 mRNA, ... 44 0.028
gb|AY084436.1| Arabidopsis thaliana clone 108221 mRNA, comp... 44 0.028
gb|AC013427.3|T1K7 Sequence of BAC T1K7 from Arabidopsis th... 44 0.028
emb|BX814676.1|CNS0AAJL Arabidopsis thaliana Full-length cD... 44 0.028
emb|BX817654.1|CNS0AAWE Arabidopsis thaliana Full-length cD... 44 0.028
emb|BX816266.1|CNS0ABUF Arabidopsis thaliana Full-length cD... 44 0.028
emb|CQ805158.1| Sequence 1569 from Patent WO2004035798 44 0.028
gb|BT015794.1| Arabidopsis thaliana At5g15490 mRNA, complet... 44 0.028
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.028
emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome... 44 0.028
ref|NM_121553.2| Arabidopsis thaliana UDP-glucose 6-dehydro... 44 0.028
ref|NM_102419.3| Arabidopsis thaliana UDP-glucose 6-dehydro... 44 0.028
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.028
gb|B09996.1|B09996 T21N18-Sp6 TAMU Arabidopsis thaliana gen... 42 0.11
gb|AV544991.1|AV544991 AV544991 Arabidopsis thaliana roots ... 42 0.11
gb|BP669236.1|BP669236 BP669236 RAFL21 Arabidopsis thaliana... 42 0.11
emb|AX509926.1| Sequence 4621 from Patent WO0216655 42 0.11
gb|AC005850.1| Arabidopsis thaliana chromosome I BAC T25B24... 42 0.11
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.11
emb|CR399865.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.44
gb|AV562122.1|AV562122 AV562122 Arabidopsis thaliana green ... 40 0.44
gb|BP653101.1|BP653101 BP653101 RAFL19 Arabidopsis thaliana... 40 0.44
gb|BP658723.1|BP658723 BP658723 RAFL19 Arabidopsis thaliana... 40 0.44
>gb|AV545118.1|AV545118 AV545118 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ72d08F 3', mRNA sequence
Length = 618
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 404 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 345
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 344 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 285
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 284 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 225
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 224 tccattggtaagcctctcgacgactggctcaaggacatgcc 184
>gb|AV556752.1|AV556752 AV556752 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ051d06F 3', mRNA sequence
Length = 494
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 391 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 332
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 331 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 272
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 271 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 212
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 211 tccattggtaagcctctcgacgactggctcaaggacatgcc 171
>gb|AV563562.1|AV563562 AV563562 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ189d12F 3', mRNA sequence
Length = 561
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 495 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 436
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 435 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 376
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 375 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 316
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 315 tccattggtaagcctctcgacgactggctcaaggacatgcc 275
>gb|AF424576.1|AF424576 Arabidopsis thaliana AT3g29360/MUO10_6 mRNA, complete cds
Length = 1793
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 1276 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 1335
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 1336 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 1395
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 1396 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 1455
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 1456 tccattggtaagcctctcgacgactggctcaaggacatgcc 1496
>dbj|AP001309.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUO10
Length = 77589
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 17249 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 17190
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 17189 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 17130
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 17129 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 17070
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 17069 tccattggtaagcctctcgacgactggctcaaggacatgcc 17029
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 11188745 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 11188686
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 11188685 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 11188626
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 11188625 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 11188566
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 11188565 tccattggtaagcctctcgacgactggctcaaggacatgcc 11188525
>gb|BT021126.1| Arabidopsis thaliana At3g29360 gene, complete cds
Length = 1486
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 1223 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 1282
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 1283 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 1342
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 1343 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 1402
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 1403 tccattggtaagcctctcgacgactggctcaaggacatgcc 1443
>ref|NM_113861.2| Arabidopsis thaliana UDP-glucose 6-dehydrogenase AT3G29360 transcript
variant AT3G29360.1 mRNA, complete cds
Length = 1793
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 1276 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 1335
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 1336 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 1395
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 1396 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 1455
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 1456 tccattggtaagcctctcgacgactggctcaaggacatgcc 1496
>ref|NM_001035715.1| Arabidopsis thaliana UDP-glucose 6-dehydrogenase AT3G29360 transcript
variant AT3G29360.2 mRNA, complete cds
Length = 1790
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 1273 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 1332
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 1333 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 1392
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 1393 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 1452
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 1453 tccattggtaagcctctcgacgactggctcaaggacatgcc 1493
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 105 bits (53), Expect = 9e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 11268845 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 11268786
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 11268785 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 11268726
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 11268725 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 11268666
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 11268665 tccattggtaagcctctcgacgactggctcaaggacatgcc 11268625
>gb|AV792950.1|AV792950 AV792950 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-17-H07 3',
mRNA sequence
Length = 438
Score = 103 bits (52), Expect = 4e-020
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 84 tgtgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgaca 143
|||||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||
Sbjct: 434 tgtgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgaca 375
Query: 144 acatgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttga 203
|||||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |
Sbjct: 374 acatgcagaaaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaa 315
Query: 204 gggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggaca 263
||||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||
Sbjct: 314 gggagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggaca 255
Query: 264 tgcc 267
||||
Sbjct: 254 tgcc 251
>gb|AI999756.1|AI999756 701557309 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701557309, mRNA sequence
Length = 608
Score = 99.6 bits (50), Expect = 5e-019
Identities = 178/221 (80%)
Strand = Plus / Minus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| ||||| |||||||
Sbjct: 437 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccnagtgggat 378
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 377 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 318
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 317 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 258
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 257 tccattggtaagcctctcgacgactggctcaaggacatgcc 217
>gb|AV791275.1|AV791275 AV791275 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-09-M15 3',
mRNA sequence
Length = 462
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 429 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 370
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 369 atgcagaaaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagg 310
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 309 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 250
Query: 266 cc 267
||
Sbjct: 249 cc 248
>gb|AV819945.1|AV819945 AV819945 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-08-B22 3',
mRNA sequence
Length = 415
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 406 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 347
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 346 atgcagaaaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagg 287
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 286 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 227
Query: 266 cc 267
||
Sbjct: 226 cc 225
>gb|BP593999.1|BP593999 BP593999 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-24-E14 3',
mRNA sequence
Length = 433
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 432 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 373
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 372 atgcagaaaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagg 313
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 312 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 253
Query: 266 cc 267
||
Sbjct: 252 cc 251
>gb|BP606879.1|BP606879 BP606879 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-72-K04 3',
mRNA sequence
Length = 436
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 431 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 372
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 371 atgcagaaaccagctttcgttttcgatggaagaaacattatgaatctgcaaaagctaagg 312
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 311 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 252
Query: 266 cc 267
||
Sbjct: 251 cc 250
>gb|BP785119.1|BP785119 BP785119 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-93-I15 3',
mRNA sequence
Length = 436
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 429 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 370
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 369 atgcagaaaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagg 310
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 309 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 250
Query: 266 cc 267
||
Sbjct: 249 cc 248
>gb|BP787058.1|BP787058 BP787058 RAFL7 Arabidopsis thaliana cDNA clone RAFL26-02-N05 3',
mRNA sequence
Length = 436
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 432 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 373
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 372 atgcagaaaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagg 313
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 312 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 253
Query: 266 cc 267
||
Sbjct: 252 cc 251
>gb|AY088902.1| Arabidopsis thaliana clone 9930 mRNA, complete sequence
Length = 1746
Score = 97.6 bits (49), Expect = 2e-018
Identities = 178/221 (80%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 1276 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 1335
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| || || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 1336 gagttcaagaatcttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 1395
Query: 167 ttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcgtctac 226
||||| || | ||||| || | | | | ||| | |||||||| || ||||| || |||
Sbjct: 1396 ttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattgtttac 1455
Query: 227 tccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 1456 tccattggtaagcctctcgacgactggctcaaggacatgcc 1496
>gb|AV536531.1|AV536531 AV536531 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0247R 5', mRNA
sequence
Length = 415
Score = 93.7 bits (47), Expect = 3e-017
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
||||||||||||| |||||||||| ||| || | |||||||||||| |||||||||||||
Sbjct: 5 tgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaacatgcaga 64
Query: 153 agcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcg 212
| || || ||||| ||||| || | ||||| || | | | | ||| | |||||||| |
Sbjct: 65 aaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagggagattg 124
Query: 213 gcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
| ||||| || |||||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 125 gtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatgcc 179
>gb|BP584642.1|BP584642 BP584642 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-47-E06 3',
mRNA sequence
Length = 436
Score = 91.7 bits (46), Expect = 1e-016
Identities = 149/182 (81%), Gaps = 1/182 (0%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 431 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 372
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 371 atgcagaaaccagctttcgtgttcgatggaagaaacattat-aatctgcaaaagctaagg 313
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 312 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 253
Query: 266 cc 267
||
Sbjct: 252 cc 251
>gb|AV554480.1|AV554480 AV554480 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ92d08R 5', mRNA sequence
Length = 380
Score = 89.7 bits (45), Expect = 5e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 226 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 285
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 286 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 345
Query: 167 ttcga 171
|||||
Sbjct: 346 ttcga 350
>gb|AV566931.1|AV566931 AV566931 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL03c04F 3', mRNA sequence
Length = 591
Score = 89.7 bits (45), Expect = 5e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 47 tgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggac 106
|||||||| ||||| || || |||| ||| ||||| | |||||| |||||||||||||
Sbjct: 416 tgggacgcatacgaagcaactaaggacgctcacggtatctgcatcatgaccgagtgggat 475
Query: 107 gagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtc 166
|||||||||| ||| || | |||||||||||| |||||||||||||| || || |||||
Sbjct: 476 gagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctttcgtg 535
Query: 167 ttcga 171
|||||
Sbjct: 536 ttcga 540
>gb|BP782998.1|BP782998 BP782998 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-84-F17 3',
mRNA sequence
Length = 423
Score = 87.7 bits (44), Expect = 2e-015
Identities = 140/172 (81%)
Strand = Plus / Minus
Query: 96 ccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagc 155
|||||||||| |||||||||| ||| || | |||||||||||| |||||||||||||| |
Sbjct: 423 ccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaacatgcagaaac 364
Query: 156 ccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggct 215
| || ||||| ||||| || | ||||| || | | | | ||| | |||||||| || |
Sbjct: 363 cagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtt 304
Query: 216 tcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|||| || |||||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 303 tcattgtttactccattggtaagcctctcgacgactggctcaaggacatgcc 252
>gb|BP592566.1|BP592566 BP592566 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-18-M23 3',
mRNA sequence
Length = 463
Score = 83.8 bits (42), Expect = 3e-014
Identities = 148/182 (81%), Gaps = 1/182 (0%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||| | |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 432 tgcatcatgaccgagtggaatgagttcaagaaccttgatttccagaagatctttgacaac 373
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 372 atgcagaaaccagctttcgtgttcgatggaagaaacattat-aatctgcaaaagctaagg 314
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||||||| |||||| |||||||||
Sbjct: 313 gagattggtttcattgtttactccattggtaagcctctcgacgactggctcaaggacatg 254
Query: 266 cc 267
||
Sbjct: 253 cc 252
>gb|BP635173.1|BP635173 BP635173 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-37-E23 3',
mRNA sequence
Length = 432
Score = 83.8 bits (42), Expect = 3e-014
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||||||
Sbjct: 431 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaac 372
Query: 146 atgcagaagcccgccttcgtcttcga 171
|||||||| || || ||||| |||||
Sbjct: 371 atgcagaaaccagctttcgtgttcga 346
>gb|BP610312.1|BP610312 BP610312 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-10-N11 3',
mRNA sequence
Length = 445
Score = 81.8 bits (41), Expect = 1e-013
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 87 gcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaaca 146
||||| ||||||||||||| |||||||||| ||| || | |||||||||||| |||||||
Sbjct: 424 gcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaaca 365
Query: 147 tgcagaagcccgccttcgtcttcga 171
||||||| || || ||||| |||||
Sbjct: 364 tgcagaaaccagctttcgtgttcga 340
>gb|BP618854.1|BP618854 BP618854 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-30-A09 3',
mRNA sequence
Length = 457
Score = 79.8 bits (40), Expect = 5e-013
Identities = 139/172 (80%)
Strand = Plus / Minus
Query: 96 ccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagc 155
|||||||||| |||||||||| ||| || | |||||||||||| |||||||||||||| |
Sbjct: 419 ccgagtgggatgagttcaagaaccttgatttccagaagatctttgacaacatgcagaaac 360
Query: 156 ccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggct 215
| || ||||| ||||| || | ||||| || | | | ||| | |||||||| || |
Sbjct: 359 cagctttcgtgttcgatggaagaaacattatgaatctccaaaagctaagggagattggtt 300
Query: 216 tcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|||| || |||||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 299 tcattgtttactccattggtaagcctctcgacgactggctcaaggacatgcc 248
>gb|BP790002.1|BP790002 BP790002 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-41-G18 3',
mRNA sequence
Length = 421
Score = 79.8 bits (40), Expect = 5e-013
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 100 gtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgc 159
|||||| |||||||||| ||| || | |||||||||||| |||||||||||||| || ||
Sbjct: 421 gtgggatgagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagc 362
Query: 160 cttcgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcat 219
||||| ||||| || | ||||| || | | | | ||| | |||||||| || |||||
Sbjct: 361 tttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcat 302
Query: 220 cgtctactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
|| |||||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 301 tgtttactccattggtaagcctctcgacgactggctcaaggacatgcc 254
>gb|BP592268.1|BP592268 BP592268 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-17-L19 3',
mRNA sequence
Length = 414
Score = 75.8 bits (38), Expect = 8e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 86 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 145
|||||| ||||||||||||| |||||||||| ||| || | |||||||||||| ||| ||
Sbjct: 406 tgcatcatgaccgagtgggatgagttcaagaaccttgatttccagaagatctttgaccac 347
Query: 146 atgcagaagcccgccttcgtcttcgacggccgcaacatcatcgacccggagaagttgagg 205
|||||||| || || ||||| ||||| || | ||||| || | | | | ||| | |||
Sbjct: 346 atgcagaaaccagctttcgtgttcgatggaagaaacattatgaatctgcaaaagctaagg 287
Query: 206 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggcttaaggacatg 265
||||| || ||||| || |||||||| || ||||| ||| || |||||| |||||||||
Sbjct: 286 gagattggtttcattgtttactccattggtaagcctctccaccactggctcaaggacatg 227
Query: 266 cc 267
||
Sbjct: 226 cc 225
>gb|BP794766.1|BP794766 BP794766 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-61-P09 3',
mRNA sequence
Length = 413
Score = 75.8 bits (38), Expect = 8e-012
Identities = 134/166 (80%)
Strand = Plus / Minus
Query: 102 gggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgcct 161
|||| |||||||||| ||| || | |||||||||||| |||||||||||||| || || |
Sbjct: 413 gggatgagttcaagaaccttgatttccagaagatctttgacaacatgcagaaaccagctt 354
Query: 162 tcgtcttcgacggccgcaacatcatcgacccggagaagttgagggagatcggcttcatcg 221
|||| ||||| || | ||||| || | | | | ||| | |||||||| || ||||| |
Sbjct: 353 tcgtgttcgatggaagaaacattatgaatctgcaaaagctaagggagattggtttcattg 294
Query: 222 tctactccatcggcaagccgctcgacgcctggcttaaggacatgcc 267
| |||||||| || ||||| ||||||| |||||| |||||||||||
Sbjct: 293 tttactccattggtaagcctctcgacgactggctcaaggacatgcc 248
>gb|AV817872.1|AV817872 AV817872 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-95-P04 3',
mRNA sequence
Length = 403
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 329 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 270
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 269 aaccggcttttatcttcgacgg 248
>gb|AV538587.1|AV538587 AV538587 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ118h08F 3', mRNA sequence
Length = 602
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|AV541943.1|AV541943 AV541943 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ174c02F 3', mRNA sequence
Length = 599
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|AV542896.1|AV542896 AV542896 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ191g10F 3', mRNA sequence
Length = 527
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 432 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 373
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 372 aaccggcttttatcttcgacgg 351
>gb|AV547150.1|AV547150 AV547150 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL26b02F 3', mRNA sequence
Length = 444
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 359 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 300
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 299 aaccggcttttatcttcgacgg 278
>gb|AV549412.1|AV549412 AV549412 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ07d01R 5', mRNA sequence
Length = 497
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 241 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 300
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 301 aaccggcttttatcttcgacgg 322
>gb|AV555612.1|AV555612 AV555612 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ020d09F 3', mRNA sequence
Length = 530
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|AV555633.1|AV555633 AV555633 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ020h08F 3', mRNA sequence
Length = 508
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|AV561460.1|AV561460 AV561460 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ151h12F 3', mRNA sequence
Length = 564
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 345 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 286
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 285 aaccggcttttatcttcgacgg 264
>gb|AV566156.1|AV566156 AV566156 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ238a01F 3', mRNA sequence
Length = 525
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 345 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 286
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 285 aaccggcttttatcttcgacgg 264
>gb|AV567064.1|AV567064 AV567064 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL06a02F 3', mRNA sequence
Length = 538
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|BP564042.1|BP564042 BP564042 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-05-M15 3',
mRNA sequence
Length = 434
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 360 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 301
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 300 aaccggcttttatcttcgacgg 279
>gb|BP565252.1|BP565252 BP565252 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-49-B19 3',
mRNA sequence
Length = 437
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 426 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 367
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 366 aaccggcttttatcttcgacgg 345
>gb|BP566061.1|BP566061 BP566061 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-G02 3',
mRNA sequence
Length = 428
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|BP572018.1|BP572018 BP572018 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-78-H02 3',
mRNA sequence
Length = 438
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 427 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 368
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 367 aaccggcttttatcttcgacgg 346
>gb|BP576887.1|BP576887 BP576887 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-93-L09 3',
mRNA sequence
Length = 427
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|BP581447.1|BP581447 BP581447 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-31-P13 3',
mRNA sequence
Length = 470
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|BP584381.1|BP584381 BP584381 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-46-A21 3',
mRNA sequence
Length = 431
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 425 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 366
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 365 aaccggcttttatcttcgacgg 344
>gb|BP591896.1|BP591896 BP591896 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-16-G07 3',
mRNA sequence
Length = 429
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 93 tgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcaga 152
|||| |||||||||||||| ||| | | || ||||||||||||||||||||||||||||
Sbjct: 412 tgactgagtgggacgagtttaagtcgttagattaccagaagatcttcgacaacatgcaga 353
Query: 153 agcccgccttcgtcttcgacgg 174
| || || || ||||||||||
Sbjct: 352 aaccggcttttatcttcgacgg 331
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,756
Number of Sequences: 1013581
Number of extensions: 224756
Number of successful extensions: 15645
Number of sequences better than 0.5: 157
Number of HSP's better than 0.5 without gapping: 158
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14689
Number of HSP's gapped (non-prelim): 956
length of query: 616
length of database: 908,940,872
effective HSP length: 20
effective length of query: 596
effective length of database: 888,669,252
effective search space: 529646874192
effective search space used: 529646874192
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)