BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405118.2.1
(1669 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|T20665.1|T20665 2673 Lambda-PRL2 Arabidopsis thaliana cD... 60 1e-006
gb|AV782420.1|AV782420 AV782420 RAFL4 Arabidopsis thaliana ... 60 1e-006
gb|AV821715.1|AV821715 AV821715 RAFL4 Arabidopsis thaliana ... 60 1e-006
gb|AV821856.1|AV821856 AV821856 RAFL4 Arabidopsis thaliana ... 60 1e-006
gb|AV442077.1|AV442077 AV442077 Arabidopsis thaliana above-... 60 1e-006
gb|AV538058.1|AV538058 AV538058 Arabidopsis thaliana roots ... 60 1e-006
gb|AV552684.1|AV552684 AV552684 Arabidopsis thaliana roots ... 60 1e-006
gb|AV565838.1|AV565838 AV565838 Arabidopsis thaliana green ... 60 1e-006
gb|AY042841.1| Arabidopsis thaliana cinnamyl alcohol dehydr... 60 1e-006
gb|AF370261.1| Arabidopsis thaliana putative cinnamyl alcoh... 60 1e-006
gb|AY063076.1| Arabidopsis thaliana putative cinnamyl alcoh... 60 1e-006
gb|AY088220.1| Arabidopsis thaliana clone 4357 mRNA, comple... 60 1e-006
gb|AY302081.1| Arabidopsis thaliana cinnamyl alcohol dehydr... 60 1e-006
ref|NM_112832.2| Arabidopsis thaliana CAD4 (CINNAMYL ALCOHO... 60 1e-006
emb|AL091251.1|CNS00UOL Arabidopsis thaliana genome survey ... 54 8e-005
gb|AV821657.1|AV821657 AV821657 RAFL4 Arabidopsis thaliana ... 54 8e-005
gb|CB259796.1|CB259796 21-E9624-013-004-J05-T7R MPIZ-ADIS-0... 54 8e-005
gb|BX841025.1|BX841025 BX841025 Arabidopsis thaliana Flower... 54 8e-005
gb|AV554034.1|AV554034 AV554034 Arabidopsis thaliana roots ... 54 8e-005
emb|AX412345.1| Sequence 109 from Patent WO0222675 54 8e-005
gb|AY034919.1| Arabidopsis thaliana putative cinnamyl alcoh... 54 8e-005
gb|AY113919.1| Arabidopsis thaliana putative cinnamyl alcoh... 54 8e-005
emb|AX507603.1| Sequence 2298 from Patent WO0216655 54 8e-005
emb|AX651542.1| Sequence 350 from Patent WO03000898 54 8e-005
emb|BX827559.1|CNS0A4CK Arabidopsis thaliana Full-length cD... 54 8e-005
gb|AY302082.1| Arabidopsis thaliana cinnamyl alcohol dehydr... 54 8e-005
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 54 8e-005
emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome... 54 8e-005
emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome... 54 8e-005
emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosom... 54 8e-005
ref|NM_119587.2| Arabidopsis thaliana CAD5 (CINNAMYL ALCOHO... 54 8e-005
ref|NM_001036711.1| Arabidopsis thaliana CAD5 (CINNAMYL ALC... 54 8e-005
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 54 8e-005
gb|AI996376.1|AI996376 701665157 A. thaliana, Columbia Col-... 52 3e-004
emb|BX823697.1|CNS0A5GF Arabidopsis thaliana Full-length cD... 52 3e-004
gb|Z34082.1|Z34082 ATTS3130 Grenoble-B Arabidopsis thaliana... 48 0.005
gb|BX838127.1|BX838127 BX838127 Arabidopsis thaliana Hormon... 48 0.005
gb|AV551366.1|AV551366 AV551366 Arabidopsis thaliana roots ... 48 0.005
gb|BP799387.1|BP799387 BP799387 RAFL14 Arabidopsis thaliana... 48 0.005
gb|BU636675.1|BU636675 010A03 Infected Arabidopsis Leaf Ara... 46 0.020
gb|AV564197.1|AV564197 AV564197 Arabidopsis thaliana green ... 46 0.020
gb|AV827937.1|AV827937 AV827937 RAFL9 Arabidopsis thaliana ... 44 0.077
gb|AV525754.1|AV525754 AV525754 Arabidopsis thaliana aboveg... 44 0.077
gb|BP807195.1|BP807195 BP807195 RAFL16 Arabidopsis thaliana... 42 0.31
>gb|T20665.1|T20665 2673 Lambda-PRL2 Arabidopsis thaliana cDNA clone 90C21T7, mRNA
sequence
Length = 333
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 73 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 132
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 133 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 190
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 287 tccaacacctcacctactacctcgtgcccaggaaccataggata 330
>gb|AV782420.1|AV782420 AV782420 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-E23 3', mRNA
sequence
Length = 382
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 193 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 252
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 253 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 310
>gb|AV821715.1|AV821715 AV821715 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-15-K01 5', mRNA
sequence
Length = 675
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 546 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 487
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 486 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 429
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 330 tccaacacctcacctactacctcgtgcccaggaaccataggata 287
>gb|AV821856.1|AV821856 AV821856 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-E23 5', mRNA
sequence
Length = 694
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 546 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 487
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 486 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 429
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 330 tccaacacctcacctactacctcgtgcccaggaaccataggata 287
>gb|AV442077.1|AV442077 AV442077 Arabidopsis thaliana above-ground organ two to six-week old
Arabidopsis thaliana cDNA clone APD19a07_r 5', mRNA
sequence
Length = 539
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 486 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 427
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 426 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 369
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 270 tccaacacctcacctactacctcgtgcccaggaaccataggata 227
>gb|AV538058.1|AV538058 AV538058 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109f05F 3', mRNA sequence
Length = 623
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 505 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 446
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 445 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 388
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 289 tccaacacctcacctactacctcgtgcccaggaaccataggata 246
>gb|AV552684.1|AV552684 AV552684 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ36a09R 5', mRNA sequence
Length = 567
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 515 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 456
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 455 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 398
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 299 tccaacacctcacctactacctcgtgcccaggaaccataggata 256
>gb|AV565838.1|AV565838 AV565838 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ231g01F 3', mRNA sequence
Length = 547
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 408 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 349
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 348 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 291
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 192 tccaacacctcacctactacctcgtgcccaggaaccataggata 149
>gb|AY042841.1| Arabidopsis thaliana cinnamyl alcohol dehydrogenase 2 (MLD14.19)
mRNA, partial cds
Length = 736
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 545 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 486
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 485 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 428
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 329 tccaacacctcacctactacctcgtgcccaggaaccataggata 286
>gb|AF370261.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At3g19450) mRNA, complete cds
Length = 1410
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 545 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 486
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 485 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 428
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 329 tccaacacctcacctactacctcgtgcccaggaaccataggata 286
>gb|AY063076.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At3g19450) mRNA, complete cds
Length = 1129
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 449 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 390
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 389 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 332
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 233 tccaacacctcacctactacctcgtgcccaggaaccataggata 190
>gb|AY088220.1| Arabidopsis thaliana clone 4357 mRNA, complete sequence
Length = 1389
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 541 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 482
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 481 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 424
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 325 tccaacacctcacctactacctcgtgcccaggaaccataggata 282
>gb|AY302081.1| Arabidopsis thaliana cinnamyl alcohol dehydrogenase (CAD4) mRNA,
complete cds
Length = 1098
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 449 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 390
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 389 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 332
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 233 tccaacacctcacctactacctcgtgcccaggaaccataggata 190
>ref|NM_112832.2| Arabidopsis thaliana CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4);
cinnamyl-alcohol dehydrogenase AT3G19450 (CAD4) mRNA,
complete cds
Length = 1403
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
||||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 545 atcttcaccacaaacttttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 486
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 485 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 428
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 329 tccaacacctcacctactacctcgtgcccaggaaccataggata 286
>emb|AL091251.1|CNS00UOL Arabidopsis thaliana genome survey sequence SP6 end of BAC T7I8 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 510
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 264 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 323
Query: 1071 cttgctc 1077
| |||||
Sbjct: 324 cctgctc 330
>gb|AV821657.1|AV821657 AV821657 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-14-P24 5', mRNA
sequence
Length = 662
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 585 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 526
Query: 1071 cttgctc 1077
| |||||
Sbjct: 525 cctgctc 519
>gb|CB259796.1|CB259796 21-E9624-013-004-J05-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770J054Q 5-PRIME, mRNA sequence
Length = 587
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 524 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 465
Query: 1071 cttgctc 1077
| |||||
Sbjct: 464 cctgctc 458
>gb|BX841025.1|BX841025 BX841025 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB21ZD12 5PRIM, mRNA sequence
Length = 1086
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 572 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 513
Query: 1071 cttgctc 1077
| |||||
Sbjct: 512 cctgctc 506
>gb|AV554034.1|AV554034 AV554034 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ79b05R 5', mRNA sequence
Length = 462
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 303 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 244
Query: 1071 cttgctc 1077
| |||||
Sbjct: 243 cctgctc 237
>emb|AX412345.1| Sequence 109 from Patent WO0222675
Length = 1074
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 532 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 473
Query: 1071 cttgctc 1077
| |||||
Sbjct: 472 cctgctc 466
>gb|AY034919.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At4g34230) mRNA, complete cds
Length = 1306
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 585 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 526
Query: 1071 cttgctc 1077
| |||||
Sbjct: 525 cctgctc 519
>gb|AY113919.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At4g34230) mRNA, complete cds
Length = 1105
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 532 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 473
Query: 1071 cttgctc 1077
| |||||
Sbjct: 472 cctgctc 466
>emb|AX507603.1| Sequence 2298 from Patent WO0216655
Length = 1074
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 532 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 473
Query: 1071 cttgctc 1077
| |||||
Sbjct: 472 cctgctc 466
>emb|AX651542.1| Sequence 350 from Patent WO03000898
Length = 1074
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 532 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 473
Query: 1071 cttgctc 1077
| |||||
Sbjct: 472 cctgctc 466
>emb|BX827559.1|CNS0A4CK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS73ZE08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1285
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 572 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 513
Query: 1071 cttgctc 1077
| |||||
Sbjct: 512 cctgctc 506
>gb|AY302082.1| Arabidopsis thaliana cinnamyl alcohol dehydrogenase (CAD5) mRNA,
complete cds
Length = 1074
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 532 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 473
Query: 1071 cttgctc 1077
| |||||
Sbjct: 472 cctgctc 466
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 12300318 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 12300377
Query: 1071 cttgctc 1077
| |||||
Sbjct: 12300378 cctgctc 12300384
>emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project)
Length = 114367
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 24710 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 24769
Query: 1071 cttgctc 1077
| |||||
Sbjct: 24770 cctgctc 24776
>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project)
Length = 94091
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 91040 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 91099
Query: 1071 cttgctc 1077
| |||||
Sbjct: 91100 cctgctc 91106
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
Length = 195921
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 33228 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 33287
Query: 1071 cttgctc 1077
| |||||
Sbjct: 33288 cctgctc 33294
>ref|NM_119587.2| Arabidopsis thaliana CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5);
cinnamyl-alcohol dehydrogenase AT4G34230 (CAD5)
transcript variant AT4G34230.1 mRNA, complete cds
Length = 1297
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 585 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 526
Query: 1071 cttgctc 1077
| |||||
Sbjct: 525 cctgctc 519
>ref|NM_001036711.1| Arabidopsis thaliana CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)
AT4G34230 (CAD5) transcript variant AT4G34230.2 mRNA,
complete cds
Length = 1306
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 585 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 526
Query: 1071 cttgctc 1077
| |||||
Sbjct: 525 cctgctc 519
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |
Sbjct: 16387536 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgcag 16387595
Query: 1071 cttgctc 1077
| |||||
Sbjct: 16387596 cctgctc 16387602
>gb|AI996376.1|AI996376 701665157 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701665157, mRNA sequence
Length = 561
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgc 1068
|||| |||||||| |||| || |||||||| ||||| ||||||||||| ||||||||
Sbjct: 95 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtagcggcgc 152
>emb|BX823697.1|CNS0A5GF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS68ZE05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1288
Score = 52.0 bits (26), Expect = 3e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 1097 atcttcaccacaaacttctggtcgacgaccatggtggaggcgaatccaccctgcgtgggc 1156
|||||||||||||||| || | ||||| ||||||| |||||| ||||| || || ||
Sbjct: 529 atcttcaccacaaactcttgattgacgatcatggtgtcggcgaagccaccttgagtaggt 470
Query: 1157 cgtccatcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| |||||||| |||||||| |||||| ||||||| || ||||||||||
Sbjct: 469 tttccatcggtgtagacatcgttgtaactccagattctcttgttacaatactgctcaa 412
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 313 tccaacacctcacctactacctcgtgcccaggaaccataggata 270
>gb|Z34082.1|Z34082 ATTS3130 Grenoble-B Arabidopsis thaliana cDNA clone GBGe337 5', mRNA
sequence
Length = 273
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 240 tccaacacctcacctactacctcgtgcccaggaaccataggata 197
>gb|BX838127.1|BX838127 BX838127 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH7ZH01 5PRIM, mRNA
sequence
Length = 935
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 315 tccaacacctcacctactacctcgtgcccaggaaccataggata 272
>gb|AV551366.1|AV551366 AV551366 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ125g08R 5', mRNA sequence
Length = 397
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 289 tccaacacctcacctactacctcgtgcccaggaaccataggata 246
>gb|BP799387.1|BP799387 BP799387 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-10-N16 5',
mRNA sequence
Length = 419
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1313 tccaccacctcgccgaccacctcgtgcccagggaccataggata 1356
|||| |||||| || || |||||||||||||| |||||||||||
Sbjct: 328 tccaacacctcacctactacctcgtgcccaggaaccataggata 285
>gb|BU636675.1|BU636675 010A03 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 638
Score = 46.1 bits (23), Expect = 0.020
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 1011 tcagcccaaagtgcttcagcgggctgtacaccgtcacgccagcgcacagcagcggcgccg 1070
|||| |||||||| |||| || |||||||| ||||| ||||||||||| | |||||| |
Sbjct: 534 tcagaccaaagtggctcagtggactgtacacagtcacaccagcgcacagtaacggcgcag 475
Query: 1071 cttgctc 1077
| |||||
Sbjct: 474 cctgctc 468
>gb|AV564197.1|AV564197 AV564197 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ200f03F 3', mRNA sequence
Length = 405
Score = 46.1 bits (23), Expect = 0.020
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1035 tgtacaccgtcacgccagcgcacagcagcggcgccgcttgctc 1077
||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 405 tgtacacagtcacaccagcgcacagtagcggcgcagcctgctc 363
>gb|AV827937.1|AV827937 AV827937 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-22-D09 5', mRNA
sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1331 acctcgtgcccagggaccataggata 1356
|||||||||||||| |||||||||||
Sbjct: 312 acctcgtgcccaggaaccataggata 287
>gb|AV525754.1|AV525754 AV525754 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APD30a05R 5', mRNA
sequence
Length = 482
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1331 acctcgtgcccagggaccataggata 1356
|||||||||||||| |||||||||||
Sbjct: 271 acctcgtgcccaggaaccataggata 246
>gb|BP807195.1|BP807195 BP807195 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-12-M11 5',
mRNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1332 cctcgtgcccagggaccataggata 1356
||||||||||||| |||||||||||
Sbjct: 313 cctcgtgcccaggaaccataggata 289
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 559,135
Number of Sequences: 1013581
Number of extensions: 559135
Number of successful extensions: 42698
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42269
Number of HSP's gapped (non-prelim): 429
length of query: 1669
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1648
effective length of database: 887,655,671
effective search space: 1462856545808
effective search space used: 1462856545808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)