BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405110.2.1
(945 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV828955.1|AV828955 AV828955 RAFL9 Arabidopsis thaliana ... 60 7e-007
gb|AY065303.1| Arabidopsis thaliana putative ubiquitin-conj... 60 7e-007
gb|AY096429.1| Arabidopsis thaliana putative ubiquitin-conj... 60 7e-007
emb|BX834060.1|CNS09YYK Arabidopsis thaliana Full-length cD... 60 7e-007
ref|NM_124465.4| Arabidopsis thaliana ubiquitin conjugating... 60 7e-007
gb|DQ027040.1| Arabidopsis thaliana ubiquitinating enzyme (... 60 7e-007
gb|AA720049.1|AA720049 33242 Lambda-PRL2 Arabidopsis thalia... 48 0.003
gb|R30069.1|R30069 12674 Lambda-PRL2 Arabidopsis thaliana c... 48 0.003
gb|R65534.1|R65534 14038 Lambda-PRL2 Arabidopsis thaliana c... 48 0.003
gb|AI997782.1|AI997782 701670706 A. thaliana, Columbia Col-... 48 0.003
gb|AV822795.1|AV822795 AV822795 RAFL5 Arabidopsis thaliana ... 48 0.003
gb|AV552432.1|AV552432 AV552432 Arabidopsis thaliana roots ... 48 0.003
gb|AY059806.1| Arabidopsis thaliana ubiquitin-conjugating e... 48 0.003
gb|AY081511.1| Arabidopsis thaliana ubiquitin-conjugating e... 48 0.003
gb|AY084220.1| Arabidopsis thaliana clone 10022 mRNA, compl... 48 0.003
emb|BX833149.1|CNS09Z3U Arabidopsis thaliana Full-length cD... 48 0.003
dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosom... 48 0.003
emb|CQ805138.1| Sequence 1549 from Patent WO2004035798 48 0.003
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 48 0.003
ref|NM_180867.1| Arabidopsis thaliana ubiquitin conjugating... 48 0.003
ref|NM_124997.2| Arabidopsis thaliana ubiquitin conjugating... 48 0.003
gb|DQ027043.1| Arabidopsis thaliana ubiquitinating enzyme (... 48 0.003
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 48 0.003
gb|AI994393.1|AI994393 701493959 A. thaliana, Ohio State cl... 46 0.011
gb|AI994394.1|AI994394 701493994 A. thaliana, Ohio State cl... 46 0.011
gb|AV789720.1|AV789720 AV789720 RAFL6 Arabidopsis thaliana ... 46 0.011
gb|AV825064.1|AV825064 AV825064 RAFL6 Arabidopsis thaliana ... 46 0.011
gb|BP626001.1|BP626001 BP626001 RAFL17 Arabidopsis thaliana... 46 0.011
gb|BP858379.1|BP858379 BP858379 RAFL21 Arabidopsis thaliana... 46 0.011
gb|AY063872.1| Arabidopsis thaliana putative E2, ubiquitin-... 46 0.011
gb|AY091232.1| Arabidopsis thaliana putative ubiquitin-conj... 46 0.011
gb|AY086787.1| Arabidopsis thaliana clone 27679 mRNA, compl... 46 0.011
gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I... 46 0.011
emb|BX842083.1|CNS09Y97 Arabidopsis thaliana Full-length cD... 46 0.011
emb|BX819773.1|CNS0AA6R Arabidopsis thaliana Full-length cD... 46 0.011
emb|BX821543.1|CNS0AA4E Arabidopsis thaliana Full-length cD... 46 0.011
ref|NM_127226.2| Arabidopsis thaliana ubiquitin conjugating... 46 0.011
gb|DQ027042.1| Arabidopsis thaliana ubiquitinating enzyme (... 46 0.011
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.011
gb|BP861731.1|BP861731 BP861731 RAFL21 Arabidopsis thaliana... 42 0.17
dbj|AB017063.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.17
>gb|AV828955.1|AV828955 AV828955 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-36-A02 5',
mRNA sequence
Length = 592
Score = 60.0 bits (30), Expect = 7e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
||||| ||||||| ||||| ||||| |||||||| ||||||| || |||||||| |||
Sbjct: 396 agagctgtcttcagagtaagagctggactccactggtctttcaagatatccaagcatatt 337
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
|| || ||||||| || || || || ||||| ||||| || ||||||||||| |||
Sbjct: 336 gcaccgctttggctactaatattcggatgccaaactttagttgaaaactgcatctttgga 277
Query: 659 ggctcaaagggata 672
|||||||| |||||
Sbjct: 276 ggctcaaatggata 263
>gb|AY065303.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme
(At5g50870) mRNA, complete cds
Length = 811
Score = 60.0 bits (30), Expect = 7e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
||||| ||||||| ||||| ||||| |||||||| ||||||| || |||||||| |||
Sbjct: 395 agagctgtcttcagagtaagagctggactccactggtctttcaagatatccaagcatatt 336
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
|| || ||||||| || || || || ||||| ||||| || ||||||||||| |||
Sbjct: 335 gcaccgctttggctactaatattcggatgccaaactttagttgaaaactgcatctttgga 276
Query: 659 ggctcaaagggata 672
|||||||| |||||
Sbjct: 275 ggctcaaatggata 262
>gb|AY096429.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme protein
(At5g50870) mRNA, complete cds
Length = 610
Score = 60.0 bits (30), Expect = 7e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
||||| ||||||| ||||| ||||| |||||||| ||||||| || |||||||| |||
Sbjct: 317 agagctgtcttcagagtaagagctggactccactggtctttcaagatatccaagcatatt 258
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
|| || ||||||| || || || || ||||| ||||| || ||||||||||| |||
Sbjct: 257 gcaccgctttggctactaatattcggatgccaaactttagttgaaaactgcatctttgga 198
Query: 659 ggctcaaagggata 672
|||||||| |||||
Sbjct: 197 ggctcaaatggata 184
>emb|BX834060.1|CNS09YYK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL92ZH05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 791
Score = 60.0 bits (30), Expect = 7e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
||||| ||||||| ||||| ||||| |||||||| ||||||| || |||||||| |||
Sbjct: 386 agagctgtcttcagagtaagagctggactccactggtctttcaagatatccaagcatatt 327
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
|| || ||||||| || || || || ||||| ||||| || ||||||||||| |||
Sbjct: 326 gcaccgctttggctactaatattcggatgccaaactttagttgaaaactgcatctttgga 267
Query: 659 ggctcaaagggata 672
|||||||| |||||
Sbjct: 266 ggctcaaatggata 253
>ref|NM_124465.4| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT5G50870 mRNA, complete cds
Length = 800
Score = 60.0 bits (30), Expect = 7e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
||||| ||||||| ||||| ||||| |||||||| ||||||| || |||||||| |||
Sbjct: 395 agagctgtcttcagagtaagagctggactccactggtctttcaagatatccaagcatatt 336
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
|| || ||||||| || || || || ||||| ||||| || ||||||||||| |||
Sbjct: 335 gcaccgctttggctactaatattcggatgccaaactttagttgaaaactgcatctttgga 276
Query: 659 ggctcaaagggata 672
|||||||| |||||
Sbjct: 275 ggctcaaatggata 262
>gb|DQ027040.1| Arabidopsis thaliana ubiquitinating enzyme (At5g50870) mRNA,
complete cds
Length = 579
Score = 60.0 bits (30), Expect = 7e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
||||| ||||||| ||||| ||||| |||||||| ||||||| || |||||||| |||
Sbjct: 317 agagctgtcttcagagtaagagctggactccactggtctttcaagatatccaagcatatt 258
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
|| || ||||||| || || || || ||||| ||||| || ||||||||||| |||
Sbjct: 257 gcaccgctttggctactaatattcggatgccaaactttagttgaaaactgcatctttgga 198
Query: 659 ggctcaaagggata 672
|||||||| |||||
Sbjct: 197 ggctcaaatggata 184
>gb|AA720049.1|AA720049 33242 Lambda-PRL2 Arabidopsis thaliana cDNA clone 145F16T7, mRNA
sequence
Length = 421
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 45 ggtaagtgcagggctccactgctctttcagaatgtc 10
>gb|R30069.1|R30069 12674 Lambda-PRL2 Arabidopsis thaliana cDNA clone 164N4T7, mRNA
sequence
Length = 511
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 350 ggtaagtgcagggctccactgctctttcagaatgtc 315
>gb|R65534.1|R65534 14038 Lambda-PRL2 Arabidopsis thaliana cDNA clone 171N18T7, mRNA
sequence
Length = 451
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 359 ggtaagtgcagggctccactgctctttcagaatgtc 324
>gb|AI997782.1|AI997782 701670706 A. thaliana, Columbia Col-0, rosette-1 Arabidopsis
thaliana cDNA clone 701670706, mRNA sequence
Length = 557
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 338 ggtaagtgcagggctccactgctctttcagaatgtc 373
>gb|AV822795.1|AV822795 AV822795 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-11-L19 5',
mRNA sequence
Length = 672
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 374 ggtaagtgcagggctccactgctctttcagaatgtc 339
>gb|AV552432.1|AV552432 AV552432 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ29e05R 5', mRNA sequence
Length = 532
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 357 ggtaagtgcagggctccactgctctttcagaatgtc 322
>gb|AY059806.1| Arabidopsis thaliana ubiquitin-conjugating enzyme-like protein
(MDA7.21) mRNA, complete cds
Length = 717
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 373 ggtaagtgcagggctccactgctctttcagaatgtc 338
>gb|AY081511.1| Arabidopsis thaliana ubiquitin-conjugating enzyme-like protein
(MDA7.21) mRNA, complete cds
Length = 479
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 294 ggtaagtgcagggctccactgctctttcagaatgtc 259
>gb|AY084220.1| Arabidopsis thaliana clone 10022 mRNA, complete sequence
Length = 750
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 379 ggtaagtgcagggctccactgctctttcagaatgtc 344
>emb|BX833149.1|CNS09Z3U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL36ZD09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 707
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 362 ggtaagtgcagggctccactgctctttcagaatgtc 327
>dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7
Length = 82033
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 64679 ggtaagtgcagggctccactgctctttcagaatgtc 64644
>emb|CQ805138.1| Sequence 1549 from Patent WO2004035798
Length = 447
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 294 ggtaagtgcagggctccactgctctttcagaatgtc 259
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 20288214 ggtaagtgcagggctccactgctctttcagaatgtc 20288179
>ref|NM_180867.1| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT5G56150 transcript variant
AT5G56150.1 mRNA, complete cds
Length = 751
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 379 ggtaagtgcagggctccactgctctttcagaatgtc 344
>ref|NM_124997.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT5G56150 transcript variant
AT5G56150.2 mRNA, complete cds
Length = 744
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 372 ggtaagtgcagggctccactgctctttcagaatgtc 337
>gb|DQ027043.1| Arabidopsis thaliana ubiquitinating enzyme (At5g56150) mRNA,
complete cds
Length = 447
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 294 ggtaagtgcagggctccactgctctttcagaatgtc 259
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || ||||||||||| ||||||||||||||
Sbjct: 22747585 ggtaagtgcagggctccactgctctttcagaatgtc 22747550
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 644 aactgcatcttcggaggctcaaagggata 672
||||||||||| ||||||||||| |||||
Sbjct: 20717777 aactgcatctttggaggctcaaatggata 20717805
>gb|AI994393.1|AI994393 701493959 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701493959, mRNA sequence
Length = 514
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 281 ggtaagggcagggctccattggtctttgagaatgtccaa 243
>gb|AI994394.1|AI994394 701493994 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701493994, mRNA sequence
Length = 511
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 281 ggtaagggcagggctccattggtctttgagaatgtccaa 243
>gb|AV789720.1|AV789720 AV789720 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-L04 3',
mRNA sequence
Length = 403
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 359 ggtaagggcagggctccattggtctttgagaatgtccaa 397
>gb|AV825064.1|AV825064 AV825064 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-L04 5',
mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 452 ggtaagggcagggctccattggtctttgagaatgtccaa 414
>gb|BP626001.1|BP626001 BP626001 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-45-N10 3',
mRNA sequence
Length = 426
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 245 ggtaagggcagggctccattggtctttgagaatgtccaa 283
>gb|BP858379.1|BP858379 BP858379 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-37-B14 5',
mRNA sequence
Length = 378
Score = 46.1 bits (23), Expect = 0.011
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 566 ctccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttaggg 625
|||||||| ||||||| || |||||||| ||||| || ||||||| || || || ||
Sbjct: 375 ctccactggtctttcaagatatccaagcatattgcaccgctttggctactaatattcgga 316
Query: 626 tgccatactttggtgatgaactgcatcttcggaggctcaaagggata 672
||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 315 tgccaaactttagttgaaaactgcatctttggaggctcaaatggata 269
>gb|AY063872.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme
(At2g16740) mRNA, complete cds
Length = 825
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 451 ggtaagggcagggctccattggtctttgagaatgtccaa 413
>gb|AY091232.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2
(At2g16740) mRNA, complete cds
Length = 478
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 294 ggtaagggcagggctccattggtctttgagaatgtccaa 256
>gb|AY086787.1| Arabidopsis thaliana clone 27679 mRNA, complete sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 370 ggtaagggcagggctccattggtctttgagaatgtccaa 332
>gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete
sequence
Length = 112792
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 72846 ggtaagggcagggctccattggtctttgagaatgtccaa 72808
>emb|BX842083.1|CNS09Y97 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL61ZE04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 677
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 328 ggtaagggcagggctccattggtctttgagaatgtccaa 290
>emb|BX819773.1|CNS0AA6R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS25ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 680
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 428 ggtaagggcagggctccattggtctttgagaatgtccaa 390
>emb|BX821543.1|CNS0AA4E Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL50ZD09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 641
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 362 ggtaagggcagggctccattggtctttgagaatgtccaa 324
>ref|NM_127226.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT2G16740 mRNA, complete cds
Length = 810
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 452 ggtaagggcagggctccattggtctttgagaatgtccaa 414
>gb|DQ027042.1| Arabidopsis thaliana ubiquitinating enzyme (At2g16740) mRNA,
complete cds
Length = 447
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 294 ggtaagggcagggctccattggtctttgagaatgtccaa 256
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 553 ggtaagggctgggctccactgatctttcagaatgtccaa 591
||||||||| |||||||| || ||||| |||||||||||
Sbjct: 7275541 ggtaagggcagggctccattggtctttgagaatgtccaa 7275503
>gb|BP861731.1|BP861731 BP861731 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-48-K20 5',
mRNA sequence
Length = 376
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 644 aactgcatcttcggaggctcaaagggata 672
||||||||||| ||||||||||| |||||
Sbjct: 297 aactgcatctttggaggctcaaatggata 269
>dbj|AB017063.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K7
Length = 68726
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 644 aactgcatcttcggaggctcaaagggata 672
||||||||||| ||||||||||| |||||
Sbjct: 3040 aactgcatctttggaggctcaaatggata 3068
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 364,902
Number of Sequences: 1013581
Number of extensions: 364902
Number of successful extensions: 28452
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28100
Number of HSP's gapped (non-prelim): 352
length of query: 945
length of database: 908,940,872
effective HSP length: 20
effective length of query: 925
effective length of database: 888,669,252
effective search space: 822019058100
effective search space used: 822019058100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)