BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV536410.1|AV536410 AV536410 Arabidopsis thaliana liquid... 70 7e-010
gb|AV537240.1|AV537240 AV537240 Arabidopsis thaliana liquid... 70 7e-010
gb|AV544844.1|AV544844 AV544844 Arabidopsis thaliana roots ... 70 7e-010
gb|BT005735.1| Arabidopsis thaliana clone RAFL15-47-M19 (R2... 70 7e-010
emb|BX817089.1|CNS0AAH9 Arabidopsis thaliana Full-length cD... 70 7e-010
emb|BX815512.1|CNS0ABEK Arabidopsis thaliana Full-length cD... 70 7e-010
gb|BT015924.1| Arabidopsis thaliana At1g62740 gene, complet... 70 7e-010
gb|BT020538.1| Arabidopsis thaliana At1g62740 gene, complet... 70 7e-010
ref|NM_104951.2| Arabidopsis thaliana unknown protein AT1G6... 70 7e-010
gb|AV562107.1|AV562107 AV562107 Arabidopsis thaliana green ... 62 2e-007
gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis tha... 58 3e-006
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 58 3e-006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 58 3e-006
gb|B11714.1|B11714 F6N12-Sp6 IGF Arabidopsis thaliana genom... 54 4e-005
emb|AL083313.1|CNS00OK3 Arabidopsis thaliana genome survey ... 54 4e-005
gb|AQ957820.1|AQ957820 LERAR86TF LERA Arabidopsis thaliana ... 54 4e-005
gb|T20791.1|T20791 2799 Lambda-PRL2 Arabidopsis thaliana cD... 50 7e-004
gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 48 0.003
gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 48 0.003
emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA ... 48 0.003
ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G1... 48 0.003
gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana ... 44 0.043
gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green ... 44 0.043
gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green ... 44 0.043
gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green ... 44 0.043
gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green ... 44 0.043
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.043
gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis tha... 44 0.043
gb|BH169340.1|BH169340 SALK_001113 Arabidopsis thaliana TDN... 42 0.17
gb|AA040981.1|AA040981 24247 CD4-13 Arabidopsis thaliana cD... 42 0.17
gb|AV539169.1|AV539169 AV539169 Arabidopsis thaliana roots ... 42 0.17
gb|BP632289.1|BP632289 BP632289 RAFL17 Arabidopsis thaliana... 42 0.17
gb|BP654313.1|BP654313 BP654313 RAFL19 Arabidopsis thaliana... 42 0.17
gb|AC007727.2|F8K7 Arabidopsis thaliana chromosome 1 BAC F8... 42 0.17
>gb|AV536410.1|AV536410 AV536410 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII1064F 3', mRNA
sequence
Length = 609
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 340 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 399
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 400 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 458
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 459 ctggactgcaccttt 473
>gb|AV537240.1|AV537240 AV537240 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII1064R 5', mRNA
sequence
Length = 513
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 320 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 261
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 260 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 202
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 201 ctggactgcaccttt 187
>gb|AV544844.1|AV544844 AV544844 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ61b01F 3', mRNA sequence
Length = 643
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 311 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 370
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 371 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 429
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 430 ctggactgcaccttt 444
>gb|BT005735.1| Arabidopsis thaliana clone RAFL15-47-M19 (R20937) putative TPR-repeat
protein (At1g62740) mRNA, complete cds
Length = 1924
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 1564 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 1505
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 1504 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 1446
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 1445 ctggactgcaccttt 1431
Score = 58.0 bits (29), Expect = 3e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 724 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatca 783
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1255 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1196
Query: 784 taaaactcttgttgctctaactctttctttgctttctcagcctca 828
|| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 1195 tagtactcttgctgctccaactctttctttgctctctctgcctca 1151
>emb|BX817089.1|CNS0AAH9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH85ZA09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1858
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 1558 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 1499
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 1498 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 1440
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 1439 ctggactgcaccttt 1425
Score = 58.0 bits (29), Expect = 3e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 724 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatca 783
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1250 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1191
Query: 784 taaaactcttgttgctctaactctttctttgctttctcagcctca 828
|| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 1190 tagtactcttgctgctccaactctttctttgctctctctgcctca 1146
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 1639 agaatgttctgaatttctgggtcttgcat 1611
>emb|BX815512.1|CNS0ABEK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS69ZC08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1846
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 1546 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 1487
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 1486 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 1428
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 1427 ctggactgcaccttt 1413
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 778 ggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|||||||| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 1184 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctca 1134
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 1627 agaatgttctgaatttctgggtcttgcat 1599
>gb|BT015924.1| Arabidopsis thaliana At1g62740 gene, complete cds
Length = 1716
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 1499 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 1440
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 1439 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 1381
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 1380 ctggactgcaccttt 1366
Score = 58.0 bits (29), Expect = 3e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 724 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatca 783
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1190 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1131
Query: 784 taaaactcttgttgctctaactctttctttgctttctcagcctca 828
|| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 1130 tagtactcttgctgctccaactctttctttgctctctctgcctca 1086
>gb|BT020538.1| Arabidopsis thaliana At1g62740 gene, complete cds
Length = 1795
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 1569 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 1510
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 1509 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 1451
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 1450 ctggactgcaccttt 1436
Score = 58.0 bits (29), Expect = 3e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 724 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatca 783
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1260 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1201
Query: 784 taaaactcttgttgctctaactctttctttgctttctcagcctca 828
|| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 1200 tagtactcttgctgctccaactctttctttgctctctctgcctca 1156
>ref|NM_104951.2| Arabidopsis thaliana unknown protein AT1G62740 mRNA, complete cds
Length = 2185
Score = 69.9 bits (35), Expect = 7e-010
Identities = 112/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 1564 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 1505
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 1504 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 1446
Query: 534 ctgaattgcaccttt 548
||| | |||||||||
Sbjct: 1445 ctggactgcaccttt 1431
Score = 58.0 bits (29), Expect = 3e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 724 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatca 783
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1255 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1196
Query: 784 taaaactcttgttgctctaactctttctttgctttctcagcctca 828
|| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 1195 tagtactcttgctgctccaactctttctttgctctctctgcctca 1151
>gb|AV562107.1|AV562107 AV562107 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ164a03F 3', mRNA sequence
Length = 465
Score = 61.9 bits (31), Expect = 2e-007
Identities = 102/123 (82%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
|||||||| ||||||| ||||| || |||||||||||||| ||||||||||| || ||
Sbjct: 340 gccttgtttatctgttgtacacatcttttaacaccatcaagaagttcctggttattagga 399
Query: 475 tcatgcttcaag-ccagcctggtaggtttccacggccttgtcatattctttcatgaagaa 533
||||| ||| || || |||||| ||||||| || |||||||| || |||||||||||
Sbjct: 400 tcatg-ttcgagacccttctggtacgtttccattgcattgtcatactccttcatgaagaa 458
Query: 534 ctg 536
|||
Sbjct: 459 ctg 461
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
complete sequence
Length = 86801
Score = 58.0 bits (29), Expect = 3e-006
Identities = 94/113 (83%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaag-ccagcctgg 495
|||| |||||||||||||| ||||||||||| || || ||||| ||| || || ||||
Sbjct: 45762 accttttaacaccatcaagaagttcctggttattaggatcatg-ttcgagacccttctgg 45704
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcaccttt 548
|| ||||||| || |||||||| || |||||||||||||| | |||||||||
Sbjct: 45703 tacgtttccattgcattgtcatactccttcatgaagaactggactgcaccttt 45651
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 778 ggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|||||||| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 45227 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctca 45177
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 46064 agaatgttctgaatttctgggtcttgcat 46036
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 58.0 bits (29), Expect = 3e-006
Identities = 94/113 (83%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaag-ccagcctgg 495
|||| |||||||||||||| ||||||||||| || || ||||| ||| || || ||||
Sbjct: 7474110 accttttaacaccatcaagaagttcctggttattaggatcatg-ttcgagacccttctgg 7474052
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcaccttt 548
|| ||||||| || |||||||| || |||||||||||||| | |||||||||
Sbjct: 7474051 tacgtttccattgcattgtcatactccttcatgaagaactggactgcaccttt 7473999
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 778 ggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|||||||| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 7473575 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctca 7473525
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 7474412 agaatgttctgaatttctgggtcttgcat 7474384
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 58.0 bits (29), Expect = 3e-006
Identities = 94/113 (83%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 437 acctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaag-ccagcctgg 495
|||| |||||||||||||| ||||||||||| || || ||||| ||| || || ||||
Sbjct: 23236459 accttttaacaccatcaagaagttcctggttattaggatcatg-ttcgagacccttctgg 23236401
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcaccttt 548
|| ||||||| || |||||||| || |||||||||||||| | |||||||||
Sbjct: 23236400 tacgtttccattgcattgtcatactccttcatgaagaactggactgcaccttt 23236348
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 778 ggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|||||||| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 23235924 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctca 23235874
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 4174243 atgttctggatttctgggtcttgcat 4174218
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 23236761 agaatgttctgaatttctgggtcttgcat 23236733
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 catgaattatccaatgtcaat 68
|||||||||||||||||||||
Sbjct: 7615331 catgaattatccaatgtcaat 7615351
>gb|B11714.1|B11714 F6N12-Sp6 IGF Arabidopsis thaliana genomic clone F6N12, DNA
sequence
Length = 1224
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 778 ggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|||||||| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 187 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctca 237
>emb|AL083313.1|CNS00OK3 Arabidopsis thaliana genome survey sequence SP6 end of BAC F6K10 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 535
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 778 ggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|||||||| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 80 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctca 130
>gb|AQ957820.1|AQ957820 LERAR86TF LERA Arabidopsis thaliana genomic clone LERAR86, DNA
sequence
Length = 798
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 778 ggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|||||||| ||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 150 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctca 200
>gb|T20791.1|T20791 2799 Lambda-PRL2 Arabidopsis thaliana cDNA clone 92N23T7, mRNA
sequence
Length = 268
Score = 50.1 bits (25), Expect = 7e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 788 actcttgttgctctaactctttctttgctttctcagcctca 828
||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct: 119 actcttgctgctccaactctttctttgctctctctgcctca 159
>gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1943
Score = 48.1 bits (24), Expect = 0.003
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
||||||||||| |||| ||||| || |||||||| ||||| |||||||| || | ||
Sbjct: 1532 gccttgttgatttgttgtacacatcttttaacaccgtcaagaagttcctgattactagga 1473
Query: 475 tcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaagaac 534
||||||| | || || ||||| ||||||| || ||||| || ||||| | ||||||
Sbjct: 1472 tcatgctcgagacccgcttggtatgtttccatcgcattgtcgtactctttgaggaagaat 1413
Query: 535 tgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaagacacttt 594
|| | |||| |||| || | || ||||| | |||||| || || || |||| |||||||
Sbjct: 1412 tggactgcagcttttctgctgtatcctttagagaaggttggatcgagctcaatacacttt 1353
Query: 595 tctgcgtctttaagaccttcaggcatggctcctaacttggtgta 638
||||| || || || ||||||||||| || |||| ||| |||||
Sbjct: 1352 tctgcatcctttagtccttcaggcattgcacctagcttagtgta 1309
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 1610 atgttctggatttctgggtcttgcat 1585
>gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1719
Score = 48.1 bits (24), Expect = 0.003
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
||||||||||| |||| ||||| || |||||||| ||||| |||||||| || | ||
Sbjct: 1502 gccttgttgatttgttgtacacatcttttaacaccgtcaagaagttcctgattactagga 1443
Query: 475 tcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaagaac 534
||||||| | || || ||||| ||||||| || ||||| || ||||| | ||||||
Sbjct: 1442 tcatgctcgagacccgcttggtatgtttccatcgcattgtcgtactctttgaggaagaat 1383
Query: 535 tgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaagacacttt 594
|| | |||| |||| || | || ||||| | |||||| || || || |||| |||||||
Sbjct: 1382 tggactgcagcttttctgctgtatcctttagagaaggttggatcgagctcaatacacttt 1323
Query: 595 tctgcgtctttaagaccttcaggcatggctcctaacttggtgta 638
||||| || || || ||||||||||| || |||| ||| |||||
Sbjct: 1322 tctgcatcctttagtccttcaggcattgcacctagcttagtgta 1279
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 1580 atgttctggatttctgggtcttgcat 1555
>emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA for stil-like (stil gene)
Length = 720
Score = 48.1 bits (24), Expect = 0.003
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
||||||||||| |||| ||||| || |||||||| ||||| |||||||| || | ||
Sbjct: 282 gccttgttgatttgttgtacacatcttttaacaccgtcaagaagttcctgattactagga 223
Query: 475 tcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaagaac 534
||||||| | || || ||||| ||||||| || ||||| || ||||| | ||||||
Sbjct: 222 tcatgctcgagacccgcttggtatgtttccatcgcgttgtcgtactctttgaggaagaat 163
Query: 535 tgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaagacacttt 594
|| | |||| |||| || | || ||||| | |||||| || || || |||| |||||||
Sbjct: 162 tggactgcagcttttctgctgtatcctttagagaaggttggatcgagctcaatacacttt 103
Query: 595 tctgcgtctttaagaccttcaggcatggctcctaacttggtgta 638
||||| || || || ||||||||||| || |||| ||| |||||
Sbjct: 102 tctgcatcctttagtccttcaggcattgcacctagcttagtgta 59
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 360 atgttctggatttctgggtcttgcat 335
>ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G12270 mRNA, complete cds
Length = 1949
Score = 48.1 bits (24), Expect = 0.003
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcggg 474
||||||||||| |||| ||||| || |||||||| ||||| |||||||| || | ||
Sbjct: 1532 gccttgttgatttgttgtacacatcttttaacaccgtcaagaagttcctgattactagga 1473
Query: 475 tcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatgaagaac 534
||||||| | || || ||||| ||||||| || ||||| || ||||| | ||||||
Sbjct: 1472 tcatgctcgagacccgcttggtatgtttccatcgcattgtcgtactctttgaggaagaat 1413
Query: 535 tgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaagacacttt 594
|| | |||| |||| || | || ||||| | |||||| || || || |||| |||||||
Sbjct: 1412 tggactgcagcttttctgctgtatcctttagagaaggttggatcgagctcaatacacttt 1353
Query: 595 tctgcgtctttaagaccttcaggcatggctcctaacttggtgta 638
||||| || || || ||||||||||| || |||| ||| |||||
Sbjct: 1352 tctgcatcctttagtccttcaggcattgcacctagcttagtgta 1309
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 1610 atgttctggatttctgggtcttgcat 1585
>gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-32-P19 3',
mRNA sequence
Length = 398
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 334 atgttctggatttctgggtcttgcat 359
>gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ025f10F 3', mRNA sequence
Length = 469
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 323 atgttctggatttctgggtcttgcat 348
>gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ174d01F 3', mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.043
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctg 464
||||||||||| |||| ||||| || |||||||| ||||| ||||||||
Sbjct: 380 gccttgttgatttgttgtacacatcttttaacaccgtcaagaagttcctg 429
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 302 atgttctggatttctgggtcttgcat 327
>gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ207b04F 3', mRNA sequence
Length = 414
Score = 44.1 bits (22), Expect = 0.043
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagtt 460
||||||||||| |||| |||||| || |||||||| ||||| ||||
Sbjct: 369 gccttgttgatttgttgaacacatcttttaacaccgtcaagaagtt 414
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 291 atgttctggatttctgggtcttgcat 316
>gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ231a11F 3', mRNA sequence
Length = 452
Score = 44.1 bits (22), Expect = 0.043
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 415 gccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctg 464
||||||||||| |||| ||||| || |||||||| ||||| ||||||||
Sbjct: 369 gccttgttgatttgttgtacacatcttttaacaccgtcaagaagttcctg 418
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 291 atgttctggatttctgggtcttgcat 316
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 4174067 atgttctggatttctgggtcttgcat 4174042
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 catgaattatccaatgtcaat 68
|||||||||||||||||||||
Sbjct: 7615156 catgaattatccaatgtcaat 7615176
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome
I, complete sequence
Length = 118374
Score = 44.1 bits (22), Expect = 0.043
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 337 atgttctggatctctgggtcttgcat 362
||||||||||| ||||||||||||||
Sbjct: 3570 atgttctggatttctgggtcttgcat 3545
>gb|BH169340.1|BH169340 SALK_001113 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_001113, DNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 94 agaatgttctgaatttctgggtcttgcat 66
>gb|AA040981.1|AA040981 24247 CD4-13 Arabidopsis thaliana cDNA clone E10E7T7, mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 224 agaatgttctgaatttctgggtcttgcat 252
>gb|AV539169.1|AV539169 AV539169 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ128e03F 3', mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 508 gccttgtcatattctttcatgaagaactgaattgcaccttt 548
|||||| |||| || |||||||||||||| | |||||||||
Sbjct: 474 gccttggcatactccttcatgaagaactggactgcaccttt 514
>gb|BP632289.1|BP632289 BP632289 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-26-I19 3',
mRNA sequence
Length = 364
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 258 agaatgttctgaatttctgggtcttgcat 286
>gb|BP654313.1|BP654313 BP654313 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-17-C20 3',
mRNA sequence
Length = 377
Score = 42.1 bits (21), Expect = 0.17
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 334 agaatgttctggatctctgggtcttgcat 362
||||||||||| || ||||||||||||||
Sbjct: 258 agaatgttctgaatttctgggtcttgcat 286
>gb|AC007727.2|F8K7 Arabidopsis thaliana chromosome 1 BAC F8K7 sequence, complete sequence
Length = 98581
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 catgaattatccaatgtcaat 68
|||||||||||||||||||||
Sbjct: 44584 catgaattatccaatgtcaat 44604
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 513,303
Number of Sequences: 1013581
Number of extensions: 513303
Number of successful extensions: 46847
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45308
Number of HSP's gapped (non-prelim): 1534
length of query: 932
length of database: 908,940,872
effective HSP length: 20
effective length of query: 912
effective length of database: 888,669,252
effective search space: 810466357824
effective search space used: 810466357824
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)