BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.3
(1028 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveg... 90 9e-016
gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO... 90 9e-016
gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1... 90 9e-016
emb|AX505699.1| Sequence 394 from Patent WO0216655 90 9e-016
emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cD... 90 9e-016
ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT... 90 9e-016
gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveg... 86 1e-014
gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveg... 78 3e-012
gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flower... 76 1e-011
gb|BE528457.1|BE528457 M79F16STM Arabidopsis developing see... 58 3e-006
gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveg... 58 3e-006
gb|AV546094.1|AV546094 AV546094 Arabidopsis thaliana roots ... 58 3e-006
gb|BE525238.1|BE525238 M60B11STM Arabidopsis developing see... 56 1e-005
gb|T21581.1|T21581 3589 Lambda-PRL2 Arabidopsis thaliana cD... 52 2e-004
emb|AJ544236.1|ATH544236 Arabidopsis thaliana mRNA for ARGO... 48 0.003
gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P... 48 0.003
dbj|AK221864.1| Arabidopsis thaliana mRNA for zwille/pinhea... 48 0.003
ref|NM_122122.2| Arabidopsis thaliana unknown protein AT5G2... 48 0.003
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.003
gb|BZ378858.1|BZ378858 SALK_112059.54.15.x Arabidopsis thal... 46 0.012
gb|BZ379147.1|BZ379147 SALK_112923.34.65.x Arabidopsis thal... 46 0.012
gb|BZ661709.1|BZ661709 SALK_025183.55.25.x Arabidopsis thal... 46 0.012
gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis tha... 46 0.012
gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11... 46 0.012
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.012
gb|BZ378856.1|BZ378856 SALK_112057.47.85.x Arabidopsis thal... 42 0.19
>gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL27f05F 3', mRNA
sequence
Length = 544
Score = 89.7 bits (45), Expect = 9e-016
Identities = 186/233 (79%)
Strand = Plus / Minus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
||||||||| | || || ||||||||| ||||||||| | ||||| || |||||||||
Sbjct: 512 gacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaatg 453
Query: 480 atcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcct 539
|| || ||||| | ||||||||||||||| ||||| |||||||||| || || ||
Sbjct: 452 attggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcagct 393
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|| || || ||||| || || || |||||||| |||||||||||||| ||||| | |||
Sbjct: 392 gacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtgcc 333
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttgg 652
|| || || ||||| || |||||||| || || |||||||||||||| ||||
Sbjct: 332 atttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgg 280
>gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO1) protein (At2g27040)
mRNA, complete cds
Length = 3171
Score = 89.7 bits (45), Expect = 9e-016
Identities = 186/233 (79%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
||||||||| | || || ||||||||| ||||||||| | ||||| || |||||||||
Sbjct: 2540 gacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaatg 2599
Query: 480 atcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcct 539
|| || ||||| | ||||||||||||||| ||||| |||||||||| || || ||
Sbjct: 2600 attggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcagct 2659
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|| || || ||||| || || || |||||||| |||||||||||||| ||||| | |||
Sbjct: 2660 gacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtgcc 2719
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttgg 652
|| || || ||||| || |||||||| || || |||||||||||||| ||||
Sbjct: 2720 atttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgg 2772
Score = 56.0 bits (28), Expect = 1e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
||||||||||||| |||||||| ||||| | |||||||| || |||||| | || ||||
Sbjct: 2121 gatctcctggacagtctgatgtcccgtccatcgctgctgtggtgagttctagggagtggc 2180
Query: 61 ctcttatctcgaaatacagagcatctgt 88
| || || || ||||| |||||||||||
Sbjct: 2181 cactgatatccaaatatagagcatctgt 2208
>gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1 protein (At2g27040)
mRNA, complete cds
Length = 2806
Score = 89.7 bits (45), Expect = 9e-016
Identities = 186/233 (79%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
||||||||| | || || ||||||||| ||||||||| | ||||| || |||||||||
Sbjct: 2410 gacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaatg 2469
Query: 480 atcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcct 539
|| || ||||| | ||||||||||||||| ||||| |||||||||| || || ||
Sbjct: 2470 attggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcagct 2529
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|| || || ||||| || || || |||||||| |||||||||||||| ||||| | |||
Sbjct: 2530 gacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtgcc 2589
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttgg 652
|| || || ||||| || |||||||| || || |||||||||||||| ||||
Sbjct: 2590 atttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgg 2642
Score = 56.0 bits (28), Expect = 1e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
||||||||||||| |||||||| ||||| | |||||||| || |||||| | || ||||
Sbjct: 1991 gatctcctggacagtctgatgtcccgtccatcgctgctgtggtgagttctagggagtggc 2050
Query: 61 ctcttatctcgaaatacagagcatctgt 88
| || || || ||||| |||||||||||
Sbjct: 2051 cactgatatccaaatatagagcatctgt 2078
>emb|AX505699.1| Sequence 394 from Patent WO0216655
Length = 2793
Score = 89.7 bits (45), Expect = 9e-016
Identities = 186/233 (79%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
||||||||| | || || ||||||||| ||||||||| | ||||| || |||||||||
Sbjct: 2428 gacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaatg 2487
Query: 480 atcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcct 539
|| || ||||| | ||||||||||||||| ||||| |||||||||| || || ||
Sbjct: 2488 attggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcagct 2547
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|| || || ||||| || || || |||||||| |||||||||||||| ||||| | |||
Sbjct: 2548 gacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtgcc 2607
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttgg 652
|| || || ||||| || |||||||| || || |||||||||||||| ||||
Sbjct: 2608 atttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgg 2660
Score = 56.0 bits (28), Expect = 1e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
||||||||||||| |||||||| ||||| | |||||||| || |||||| | || ||||
Sbjct: 2009 gatctcctggacagtctgatgtcccgtccatcgctgctgtggtgagttctagggagtggc 2068
Query: 61 ctcttatctcgaaatacagagcatctgt 88
| || || || ||||| |||||||||||
Sbjct: 2069 cactgatatccaaatatagagcatctgt 2096
>emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS63ZA02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 838
Score = 89.7 bits (45), Expect = 9e-016
Identities = 186/233 (79%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
||||||||| | || || ||||||||| ||||||||| | ||||| || |||||||||
Sbjct: 254 gacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaatg 313
Query: 480 atcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcct 539
|| || ||||| | ||||||||||||||| ||||| |||||||||| || || ||
Sbjct: 314 attggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcagct 373
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|| || || ||||| || || || |||||||| |||||||||||||| ||||| | |||
Sbjct: 374 gacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtgcc 433
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttgg 652
|| || || ||||| || |||||||| || || |||||||||||||| ||||
Sbjct: 434 atttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgg 486
>ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT2G27040 (AGO4) mRNA,
complete cds
Length = 3166
Score = 89.7 bits (45), Expect = 9e-016
Identities = 186/233 (79%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
||||||||| | || || ||||||||| ||||||||| | ||||| || |||||||||
Sbjct: 2540 gacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaatg 2599
Query: 480 atcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcct 539
|| || ||||| | ||||||||||||||| ||||| |||||||||| || || ||
Sbjct: 2600 attggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcagct 2659
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|| || || ||||| || || || |||||||| |||||||||||||| ||||| | |||
Sbjct: 2660 gacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtgcc 2719
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttgg 652
|| || || ||||| || |||||||| || || |||||||||||||| ||||
Sbjct: 2720 atttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgg 2772
Score = 56.0 bits (28), Expect = 1e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
||||||||||||| |||||||| ||||| | |||||||| || |||||| | || ||||
Sbjct: 2121 gatctcctggacagtctgatgtcccgtccatcgctgctgtggtgagttctagggagtggc 2180
Query: 61 ctcttatctcgaaatacagagcatctgt 88
| || || || ||||| |||||||||||
Sbjct: 2181 cactgatatccaaatatagagcatctgt 2208
>gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL49a09F 3', mRNA
sequence
Length = 611
Score = 85.7 bits (43), Expect = 1e-014
Identities = 163/203 (80%)
Strand = Plus / Minus
Query: 450 gatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccac 509
||||||||| | ||||| || ||||||||||| || ||||| | |||||||||||||||
Sbjct: 535 gatttctacctctgtgctcacgctggaatgattggaactacccgcccaactcactaccac 476
Query: 510 atcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctc 569
||||| |||||||||| || || |||| || || ||||| || || || ||||||
Sbjct: 475 gtcctgtatgatgagattggtttttcagctgacgaacttcaggaacttgtccactcgctc 416
Query: 570 tcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgca 629
|| |||||||||||||| ||||| | ||||| || || ||||| || |||||||| ||
Sbjct: 415 tcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatctgctatgct 356
Query: 630 catctggcagctgctcaggttgg 652
|| |||||||||||||| ||||
Sbjct: 355 cacttggcagctgctcagcttgg 333
>gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL43g03F 3', mRNA
sequence
Length = 484
Score = 77.8 bits (39), Expect = 3e-012
Identities = 153/191 (80%)
Strand = Plus / Minus
Query: 462 tgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgat 521
||||| || ||||||||||| || ||||| | ||||||||||||||| ||||| |||||
Sbjct: 481 tgtgctcacgctggaatgattggaactacccgcccaactcactaccacgtcctgtatgat 422
Query: 522 gagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtac 581
||||| || || |||| || || ||||| || || || |||||||| |||||||||
Sbjct: 421 gagattggtttttcagctgacgaacttcaggaacttgtccactcgctctcctatgtgtac 362
Query: 582 caaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagct 641
||||| ||||| | ||||| || || ||||| || |||||||| || || ||||||||
Sbjct: 361 caaagaagcaccagtgccatttctgttgttgcgccgatctgctatgctcacttggcagct 302
Query: 642 gctcaggttgg 652
|||||| ||||
Sbjct: 301 gctcagcttgg 291
>gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB75ZH02 3PRIM, mRNA sequence
Length = 922
Score = 75.8 bits (38), Expect = 1e-011
Identities = 149/184 (80%), Gaps = 4/184 (2%)
Strand = Plus / Minus
Query: 471 gctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgagataggc 530
||||||||||| || ||||| | ||||||||||||||| ||||| |||||||||| ||
Sbjct: 524 gctggaatgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggt 465
Query: 531 --ttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaagga 588
||||| |||| || || ||||| || || || |||||||| |||||||||||||| |
Sbjct: 464 ctttcag--ctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaa 407
Query: 589 gcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcagg 648
|||| | ||||| || || ||||| || |||||||| || || ||||||||||||||
Sbjct: 406 gcaccagtgccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagc 347
Query: 649 ttgg 652
||||
Sbjct: 346 ttgg 343
>gb|BE528457.1|BE528457 M79F16STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600037559R1 5', mRNA sequence
Length = 240
Score = 58.0 bits (29), Expect = 3e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 564 tcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgc 623
|||||||| |||||||||||||| ||||| | ||||| || || ||||| || ||||||
Sbjct: 24 tcgctctcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatctgc 83
Query: 624 tacgcacatctggcagctgctcaggttgg 652
|| || || |||||||||||||| ||||
Sbjct: 84 tatgctcacttggcagctgctcagcttgg 112
>gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL13c04F 3', mRNA
sequence
Length = 462
Score = 58.0 bits (29), Expect = 3e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 564 tcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgc 623
|||||||| |||||||||||||| ||||| | ||||| || || ||||| || ||||||
Sbjct: 403 tcgctctcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatctgc 344
Query: 624 tacgcacatctggcagctgctcaggttgg 652
|| || || |||||||||||||| ||||
Sbjct: 343 tatgctcacttggcagctgctcagcttgg 315
>gb|AV546094.1|AV546094 AV546094 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL08d06F 3', mRNA sequence
Length = 479
Score = 58.0 bits (29), Expect = 3e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 564 tcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgc 623
|||||||| |||||||||||||| ||||| | ||||| || || ||||| || ||||||
Sbjct: 472 tcgctctcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatctgc 413
Query: 624 tacgcacatctggcagctgctcaggttgg 652
|| || || |||||||||||||| ||||
Sbjct: 412 tatgctcacttggcagctgctcagcttgg 384
>gb|BE525238.1|BE525238 M60B11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M60B11 5', mRNA sequence
Length = 366
Score = 56.0 bits (28), Expect = 1e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
||||||||||||| |||||||| ||||| | |||||||| || |||||| | || ||||
Sbjct: 219 gatctcctggacagtctgatgtcccgtccatcgctgctgtggtgagttctagggagtggc 278
Query: 61 ctcttatctcgaaatacagagcatctgt 88
| || || || ||||| |||||||||||
Sbjct: 279 cactgatatccaaatatagagcatctgt 306
>gb|T21581.1|T21581 3589 Lambda-PRL2 Arabidopsis thaliana cDNA clone 95A9T7, mRNA
sequence
Length = 507
Score = 52.0 bits (26), Expect = 2e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 3 tctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcct 62
||||||||||| |||||||| ||||| | |||||||| || |||||| | || |||||
Sbjct: 69 tctcctggacagtctgatgtcccgtccatcgctgctgtggtgagttctagggagtggcca 128
Query: 63 cttatctcgaaatacagagcatctgt 88
|| || || ||||| |||||||||||
Sbjct: 129 ctgatatccaaatatagagcatctgt 154
>emb|AJ544236.1|ATH544236 Arabidopsis thaliana mRNA for ARGONAUTE9 protein (At5g21150 gene)
Length = 2897
Score = 48.1 bits (24), Expect = 0.003
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 6 cctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcctctt 65
||||| || |||||| |||| || ||||||||||||| || || | ||||||| ||
Sbjct: 1912 cctggccagtctgatataccatcaattgctgctgttgtgagctcaagacaatggccactc 1971
Query: 66 atctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattga 121
||||| ||||| | |||| ||| ||||| ||||||| |||||||||||||||||
Sbjct: 1972 atctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaatgattga 2027
>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete
sequence
Length = 99345
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 495 ccaactcactaccacatcctgcatgatgagat 526
||||||||||||||| ||||| ||||||||||
Sbjct: 36750 ccaactcactaccacgtcctgtatgatgagat 36719
>dbj|AK221864.1| Arabidopsis thaliana mRNA for zwille/pinhead-like protein, partial
cds, clone: RAFL22-12-J01
Length = 1966
Score = 48.1 bits (24), Expect = 0.003
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 6 cctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcctctt 65
||||| || |||||| |||| || ||||||||||||| || || | ||||||| ||
Sbjct: 966 cctggccagtctgatataccatcaattgctgctgttgtgagctcaagacaatggccactc 1025
Query: 66 atctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattga 121
||||| ||||| | |||| ||| ||||| ||||||| |||||||||||||||||
Sbjct: 1026 atctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaatgattga 1081
Score = 44.1 bits (22), Expect = 0.047
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 558 gtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctccc 617
|||||||| || || ||||| ||||| |||||||| || || || ||||||||||| ||
Sbjct: 1518 gtgcattctctgtcctatgtctaccagaggagcaccactgcgatctcagtcgttgcacct 1577
Query: 618 atctgctacgcacatctggcagctgc 643
| || ||||| ||| ||||||||||
Sbjct: 1578 gtatgttacgctcatttggcagctgc 1603
>ref|NM_122122.2| Arabidopsis thaliana unknown protein AT5G21150 mRNA, complete cds
Length = 3018
Score = 48.1 bits (24), Expect = 0.003
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 6 cctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcctctt 65
||||| || |||||| |||| || ||||||||||||| || || | ||||||| ||
Sbjct: 2028 cctggccagtctgatataccatcaattgctgctgttgtgagctcaagacaatggccactc 2087
Query: 66 atctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattga 121
||||| ||||| | |||| ||| ||||| ||||||| |||||||||||||||||
Sbjct: 2088 atctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaatgattga 2143
Score = 44.1 bits (22), Expect = 0.047
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 558 gtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctccc 617
|||||||| || || ||||| ||||| |||||||| || || || ||||||||||| ||
Sbjct: 2580 gtgcattctctgtcctatgtctaccagaggagcaccactgcgatctcagtcgttgcacct 2639
Query: 618 atctgctacgcacatctggcagctgc 643
| || ||||| ||| ||||||||||
Sbjct: 2640 gtatgttacgctcatttggcagctgc 2665
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 495 ccaactcactaccacatcctgcatgatgagat 526
||||||||||||||| ||||| ||||||||||
Sbjct: 11544353 ccaactcactaccacgtcctgtatgatgagat 11544322
>gb|BZ378858.1|BZ378858 SALK_112059.54.15.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_112059.54.15.x,
DNA sequence
Length = 423
Score = 46.1 bits (23), Expect = 0.012
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 55 aatggcctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaa 114
||||||| || ||||| ||||| | |||| ||| ||||| ||||||| ||||||||||
Sbjct: 377 aatggccactcatctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaa 318
Query: 115 tgattga 121
|||||||
Sbjct: 317 tgattga 311
>gb|BZ379147.1|BZ379147 SALK_112923.34.65.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_112923.34.65.x,
DNA sequence
Length = 395
Score = 46.1 bits (23), Expect = 0.012
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 55 aatggcctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaa 114
||||||| || ||||| ||||| | |||| ||| ||||| ||||||| ||||||||||
Sbjct: 350 aatggccactcatctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaa 291
Query: 115 tgattga 121
|||||||
Sbjct: 290 tgattga 284
>gb|BZ661709.1|BZ661709 SALK_025183.55.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_025183.55.25.x,
DNA sequence
Length = 455
Score = 46.1 bits (23), Expect = 0.012
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 55 aatggcctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaa 114
||||||| || ||||| ||||| | |||| ||| ||||| ||||||| ||||||||||
Sbjct: 330 aatggccactcatctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaa 271
Query: 115 tgattga 121
|||||||
Sbjct: 270 tgattga 264
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome
V, complete sequence
Length = 84413
Score = 46.1 bits (23), Expect = 0.012
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 55 aatggcctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaa 114
||||||| || ||||| ||||| | |||| ||| ||||| ||||||| ||||||||||
Sbjct: 13333 aatggccactcatctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaa 13274
Query: 115 tgattga 121
|||||||
Sbjct: 13273 tgattga 13267
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete
sequence
Length = 112600
Score = 46.1 bits (23), Expect = 0.012
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 55 aatggcctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaa 114
||||||| || ||||| ||||| | |||| ||| ||||| ||||||| ||||||||||
Sbjct: 78248 aatggccactcatctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaa 78189
Query: 115 tgattga 121
|||||||
Sbjct: 78188 tgattga 78182
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.012
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 55 aatggcctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaa 114
||||||| || ||||| ||||| | |||| ||| ||||| ||||||| ||||||||||
Sbjct: 7196691 aatggccactcatctcaaaatataaggcatgtgtacgcacacaatcacgcaaaatggaaa 7196750
Query: 115 tgattga 121
|||||||
Sbjct: 7196751 tgattga 7196757
>gb|BZ378856.1|BZ378856 SALK_112057.47.85.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_112057.47.85.x,
DNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 81 gcatctgtccgcacccaatcaccaaaaatggaaatgattga 121
|||| ||| ||||| ||||||| |||||||||||||||||
Sbjct: 350 gcatgtgtacgcacacaatcacgcaaaatggaaatgattga 310
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 488,035
Number of Sequences: 1013581
Number of extensions: 488035
Number of successful extensions: 35412
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34921
Number of HSP's gapped (non-prelim): 488
length of query: 1028
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1008
effective length of database: 888,669,252
effective search space: 895778606016
effective search space used: 895778606016
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)