BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.2
(1076 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveg... 86 1e-014
gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO... 86 1e-014
gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1... 86 1e-014
emb|AX505699.1| Sequence 394 from Patent WO0216655 86 1e-014
emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cD... 86 1e-014
ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT... 86 1e-014
gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveg... 78 4e-012
gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveg... 76 1e-011
gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flower... 70 9e-010
gb|BE528457.1|BE528457 M79F16STM Arabidopsis developing see... 56 1e-005
gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveg... 56 1e-005
gb|AV546094.1|AV546094 AV546094 Arabidopsis thaliana roots ... 56 1e-005
emb|AJ544236.1|ATH544236 Arabidopsis thaliana mRNA for ARGO... 50 8e-004
gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis tha... 50 8e-004
gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11... 50 8e-004
dbj|AK118258.1| Arabidopsis thaliana At5g21150 mRNA for put... 50 8e-004
dbj|AK221864.1| Arabidopsis thaliana mRNA for zwille/pinhea... 50 8e-004
ref|NM_122122.2| Arabidopsis thaliana unknown protein AT5G2... 50 8e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 8e-004
gb|BZ378858.1|BZ378858 SALK_112059.54.15.x Arabidopsis thal... 46 0.013
gb|BZ379147.1|BZ379147 SALK_112923.34.65.x Arabidopsis thal... 46 0.013
gb|BZ661709.1|BZ661709 SALK_025183.55.25.x Arabidopsis thal... 46 0.013
gb|AQ958350.1|AQ958350 LERAX03TR LERA Arabidopsis thaliana ... 42 0.20
gb|BZ378856.1|BZ378856 SALK_112057.47.85.x Arabidopsis thal... 42 0.20
gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis tha... 42 0.20
gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BA... 42 0.20
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.20
ref|NM_122111.2| Arabidopsis thaliana unknown protein AT5G2... 42 0.20
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.20
>gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL27f05F 3', mRNA
sequence
Length = 544
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Plus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 232 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 291
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 292 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 351
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 352 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 411
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatgtgaacac 618
|||| ||||| ||| ||||||||||| | |||||| |||||||||||||| || | |||
Sbjct: 412 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagcgtgagcacag 471
Query: 619 atgtagaaatcgaagttccttggatgacagactttgttgtcaa 661
| ||||||||| |||| |||| ||||| | |||||||||||
Sbjct: 472 aggtagaaatcattgttctttgggtgacatattttgttgtcaa 514
>gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO1) protein (At2g27040)
mRNA, complete cds
Length = 3171
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Minus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 2820 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 2761
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 2760 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 2701
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 2700 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 2641
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatgtgaacac 618
|||| ||||| ||| ||||||||||| | |||||| |||||||||||||| || | |||
Sbjct: 2640 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagcgtgagcacag 2581
Query: 619 atgtagaaatcgaagttccttggatgacagactttgttgtcaa 661
| ||||||||| |||| |||| ||||| | |||||||||||
Sbjct: 2580 aggtagaaatcattgttctttgggtgacatattttgttgtcaa 2538
>gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1 protein (At2g27040)
mRNA, complete cds
Length = 2806
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Minus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 2690 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 2631
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 2630 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 2571
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 2570 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 2511
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatgtgaacac 618
|||| ||||| ||| ||||||||||| | |||||| |||||||||||||| || | |||
Sbjct: 2510 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagcgtgagcacag 2451
Query: 619 atgtagaaatcgaagttccttggatgacagactttgttgtcaa 661
| ||||||||| |||| |||| ||||| | |||||||||||
Sbjct: 2450 aggtagaaatcattgttctttgggtgacatattttgttgtcaa 2408
>emb|AX505699.1| Sequence 394 from Patent WO0216655
Length = 2793
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Minus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 2708 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 2649
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 2648 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 2589
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 2588 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 2529
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatgtgaacac 618
|||| ||||| ||| ||||||||||| | |||||| |||||||||||||| || | |||
Sbjct: 2528 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagcgtgagcacag 2469
Query: 619 atgtagaaatcgaagttccttggatgacagactttgttgtcaa 661
| ||||||||| |||| |||| ||||| | |||||||||||
Sbjct: 2468 aggtagaaatcattgttctttgggtgacatattttgttgtcaa 2426
>emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS63ZA02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 838
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Minus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 534 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 475
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 474 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 415
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 414 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 355
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatgtgaacac 618
|||| ||||| ||| ||||||||||| | |||||| |||||||||||||| || | |||
Sbjct: 354 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagcgtgagcacag 295
Query: 619 atgtagaaatcgaagttccttggatgacagactttgttgtcaa 661
| ||||||||| |||| |||| ||||| | |||||||||||
Sbjct: 294 aggtagaaatcattgttctttgggtgacatattttgttgtcaa 252
>ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT2G27040 (AGO4) mRNA,
complete cds
Length = 3166
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Minus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 2820 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 2761
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 2760 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 2701
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 2700 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 2641
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatgtgaacac 618
|||| ||||| ||| ||||||||||| | |||||| |||||||||||||| || | |||
Sbjct: 2640 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagcgtgagcacag 2581
Query: 619 atgtagaaatcgaagttccttggatgacagactttgttgtcaa 661
| ||||||||| |||| |||| ||||| | |||||||||||
Sbjct: 2580 aggtagaaatcattgttctttgggtgacatattttgttgtcaa 2538
>gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL49a09F 3', mRNA
sequence
Length = 611
Score = 77.8 bits (39), Expect = 4e-012
Identities = 198/251 (78%)
Strand = Plus / Plus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 285 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 344
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 345 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 404
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 405 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 464
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagcatgtgaacac 618
|||| ||||| ||| ||||||||||| | |||||| |||||||||||||| || | |||
Sbjct: 465 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagcgtgagcacag 524
Query: 619 atgtagaaatc 629
| |||||||||
Sbjct: 525 aggtagaaatc 535
>gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL43g03F 3', mRNA
sequence
Length = 484
Score = 75.8 bits (38), Expect = 1e-011
Identities = 182/230 (79%)
Strand = Plus / Plus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 243 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 302
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 303 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 362
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaagcctatctcg 558
||||| || ||||||||||| || || ||||| || || |||| || || |||||
Sbjct: 363 tacacataggagagcgagtggacaagttcctgaagttcgtcagctgaaaaaccaatctca 422
Query: 559 tcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagc 608
|||| ||||| ||| ||||||||||| | |||||| ||||||||||||||
Sbjct: 423 tcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagc 472
>gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB75ZH02 3PRIM, mRNA sequence
Length = 922
Score = 69.9 bits (35), Expect = 9e-010
Identities = 184/231 (79%), Gaps = 2/231 (0%)
Strand = Plus / Plus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 295 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 354
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 355 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 414
Query: 499 tacacgtaagagagcgagtgcaccagctcctgcaggtcatcaggattgaag-cctatctc 557
||||| || ||||||||||| || || ||||| || || |||| | ||| || |||||
Sbjct: 415 tacacataggagagcgagtggacaagttcctgaagttcgtcagc-tgaaagaccaatctc 473
Query: 558 gtcatgcaggatgtgatagtgagttggcctggtagtcccaatcattccagc 608
|||| ||||| ||| ||||||||||| | |||||| ||||||||||||||
Sbjct: 474 atcatacaggacgtggtagtgagttgggcgggtagttccaatcattccagc 524
>gb|BE528457.1|BE528457 M79F16STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600037559R1 5', mRNA sequence
Length = 240
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Minus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 160 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 101
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 100 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 41
Query: 499 tacacgtaagagagcgagtg 518
||||| || |||||||||||
Sbjct: 40 tacacataggagagcgagtg 21
>gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL13c04F 3', mRNA
sequence
Length = 462
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Plus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 267 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 326
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 327 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 386
Query: 499 tacacgtaagagagcgagtg 518
||||| || |||||||||||
Sbjct: 387 tacacataggagagcgagtg 406
>gb|AV546094.1|AV546094 AV546094 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL08d06F 3', mRNA sequence
Length = 479
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Plus
Query: 379 ccatggctagatgaagtctccgacatctcgtcgaactttatgaactgcccaacctgggcg 438
|||||||| ||||| ||||| ||| || || ||||| |||||| ||||| ||| ||
Sbjct: 336 ccatggcttgatgatgtctcagactgatcttcaaacttcatgaacgtcccaagctgagca 395
Query: 439 gctgcaaggtgggcgtagcagatgggagcaacaactgatatggctgttgtgctcctttgg 498
||||| | ||| || |||||||| || |||||||| || ||||| | ||||| ||||||
Sbjct: 396 gctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgcttctttgg 455
Query: 499 tacacgtaagagagcgagtg 518
||||| || |||||||||||
Sbjct: 456 tacacataggagagcgagtg 475
>emb|AJ544236.1|ATH544236 Arabidopsis thaliana mRNA for ARGONAUTE9 protein (At5g21150 gene)
Length = 2897
Score = 50.1 bits (25), Expect = 8e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||||||||||| |||| ||| ||||| |||| ||| | |||||||||
Sbjct: 2273 gtgtggtggttcttctgggcaactatcactgtaaacttcggatgccacgtatcatcaaga 2214
Query: 772 aatttgcaagcct 784
|| ||||| ||||
Sbjct: 2213 aacttgcatgcct 2201
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 2027 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 1968
Query: 1018 ggccatt 1024
|||||||
Sbjct: 1967 ggccatt 1961
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome
V, complete sequence
Length = 84413
Score = 50.1 bits (25), Expect = 8e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||||||||||| |||| ||| ||||| |||| ||| | |||||||||
Sbjct: 12696 gtgtggtggttcttctgggcaactatcactgtaaacttcggatgccacgtatcatcaaga 12755
Query: 772 aatttgcaagcct 784
|| ||||| ||||
Sbjct: 12756 aacttgcatgcct 12768
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 13267 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 13326
Query: 1018 ggccatt 1024
|||||||
Sbjct: 13327 ggccatt 13333
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete
sequence
Length = 112600
Score = 50.1 bits (25), Expect = 8e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||||||||||| |||| ||| ||||| |||| ||| | |||||||||
Sbjct: 77611 gtgtggtggttcttctgggcaactatcactgtaaacttcggatgccacgtatcatcaaga 77670
Query: 772 aatttgcaagcct 784
|| ||||| ||||
Sbjct: 77671 aacttgcatgcct 77683
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 78182 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 78241
Query: 1018 ggccatt 1024
|||||||
Sbjct: 78242 ggccatt 78248
>dbj|AK118258.1| Arabidopsis thaliana At5g21150 mRNA for putative zwille/pinhead,
complete cds, clone: RAFL19-56-B01
Length = 3090
Score = 50.1 bits (25), Expect = 8e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||||||||||| |||| ||| ||||| |||| ||| | |||||||||
Sbjct: 2454 gtgtggtggttcttctgggcaactatcactgtaaacttcggatgccacgtatcatcaaga 2395
Query: 772 aatttgcaagcct 784
|| ||||| ||||
Sbjct: 2394 aacttgcatgcct 2382
>dbj|AK221864.1| Arabidopsis thaliana mRNA for zwille/pinhead-like protein, partial
cds, clone: RAFL22-12-J01
Length = 1966
Score = 50.1 bits (25), Expect = 8e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||||||||||| |||| ||| ||||| |||| ||| | |||||||||
Sbjct: 1327 gtgtggtggttcttctgggcaactatcactgtaaacttcggatgccacgtatcatcaaga 1268
Query: 772 aatttgcaagcct 784
|| ||||| ||||
Sbjct: 1267 aacttgcatgcct 1255
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 1081 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 1022
Query: 1018 ggccatt 1024
|||||||
Sbjct: 1021 ggccatt 1015
>ref|NM_122122.2| Arabidopsis thaliana unknown protein AT5G21150 mRNA, complete cds
Length = 3018
Score = 50.1 bits (25), Expect = 8e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||||||||||| |||| ||| ||||| |||| ||| | |||||||||
Sbjct: 2389 gtgtggtggttcttctgggcaactatcactgtaaacttcggatgccacgtatcatcaaga 2330
Query: 772 aatttgcaagcct 784
|| ||||| ||||
Sbjct: 2329 aacttgcatgcct 2317
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 2143 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 2084
Query: 1018 ggccatt 1024
|||||||
Sbjct: 2083 ggccatt 2077
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 8e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 712 gtgtggtgattcttctgggcaatgatcaatgtgaacttgggattccatttctcatcaaga 771
|||||||| ||||||||||||| |||| ||| ||||| |||| ||| | |||||||||
Sbjct: 7197328 gtgtggtggttcttctgggcaactatcactgtaaacttcggatgccacgtatcatcaaga 7197269
Query: 772 aatttgcaagcct 784
|| ||||| ||||
Sbjct: 7197268 aacttgcatgcct 7197256
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 7196757 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 7196698
Query: 1018 ggccatt 1024
|||||||
Sbjct: 7196697 ggccatt 7196691
>gb|BZ378858.1|BZ378858 SALK_112059.54.15.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_112059.54.15.x,
DNA sequence
Length = 423
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 311 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 370
Query: 1018 ggccatt 1024
|||||||
Sbjct: 371 ggccatt 377
>gb|BZ379147.1|BZ379147 SALK_112923.34.65.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_112923.34.65.x,
DNA sequence
Length = 395
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 284 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 343
Query: 1018 ggccatt 1024
|||||||
Sbjct: 344 ggccatt 350
>gb|BZ661709.1|BZ661709 SALK_025183.55.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_025183.55.25.x,
DNA sequence
Length = 455
Score = 46.1 bits (23), Expect = 0.013
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgctctgtatttcgagataaga 1017
||||||||||||||||| ||||||| ||||| ||| |||| | ||||| ||||| ||
Sbjct: 264 tcaatcatttccattttgcgtgattgtgtgcgtacacatgccttatattttgagatgagt 323
Query: 1018 ggccatt 1024
|||||||
Sbjct: 324 ggccatt 330
>gb|AQ958350.1|AQ958350 LERAX03TR LERA Arabidopsis thaliana genomic clone LERAX03, DNA
sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 865 tcaggctttctcttccctgaa 885
|||||||||||||||||||||
Sbjct: 170 tcaggctttctcttccctgaa 150
>gb|BZ378856.1|BZ378856 SALK_112057.47.85.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_112057.47.85.x,
DNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 958 tcaatcatttccatttttggtgattgggtgcggacagatgc 998
||||||||||||||||| ||||||| ||||| ||| ||||
Sbjct: 310 tcaatcatttccattttgcgtgattgtgtgcgtacacatgc 350
>gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I,
complete sequence
Length = 90149
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 865 tcaggctttctcttccctgaa 885
|||||||||||||||||||||
Sbjct: 79906 tcaggctttctcttccctgaa 79926
>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete
sequence
Length = 111301
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 865 tcaggctttctcttccctgaa 885
|||||||||||||||||||||
Sbjct: 86923 tcaggctttctcttccctgaa 86903
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 865 tcaggctttctcttccctgaa 885
|||||||||||||||||||||
Sbjct: 14258471 tcaggctttctcttccctgaa 14258491
>ref|NM_122111.2| Arabidopsis thaliana unknown protein AT5G21030 mRNA, complete cds
Length = 2553
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 817 tggttaaactgactttcactaacaccgtccctgaagatgat 857
|||||||||||| |||||| ||||| |||||||| |||||
Sbjct: 2087 tggttaaactgagattcactgacaccatccctgaaaatgat 2047
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 865 tcaggctttctcttccctgaa 885
|||||||||||||||||||||
Sbjct: 30022150 tcaggctttctcttccctgaa 30022170
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 483,651
Number of Sequences: 1013581
Number of extensions: 483651
Number of successful extensions: 34128
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33638
Number of HSP's gapped (non-prelim): 490
length of query: 1076
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1056
effective length of database: 888,669,252
effective search space: 938434730112
effective search space used: 938434730112
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)