BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.1
(867 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveg... 86 1e-014
gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO... 86 1e-014
gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1... 86 1e-014
emb|AX505699.1| Sequence 394 from Patent WO0216655 86 1e-014
emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cD... 86 1e-014
ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT... 86 1e-014
gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveg... 78 3e-012
gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveg... 76 1e-011
gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flower... 70 7e-010
gb|BE528457.1|BE528457 M79F16STM Arabidopsis developing see... 56 1e-005
gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveg... 56 1e-005
gb|AV546094.1|AV546094 AV546094 Arabidopsis thaliana roots ... 56 1e-005
>gb|AV523440.1|AV523440 AV523440 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL27f05F 3', mRNA
sequence
Length = 544
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Minus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
||||||||||| | ||||| |||| |||| ||||||||| | ||| | || |||||||
Sbjct: 514 ttgacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaa 455
Query: 272 tgattgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatc 331
||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| || ||
Sbjct: 454 tgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcag 395
Query: 332 ctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacag 391
|||| || || ||||| || || ||||||||||| || ||||||||||| ||||| | |
Sbjct: 394 ctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtg 335
Query: 392 ccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagt 451
|||| || |||||||| || |||||||| || ||| | ||||| || ||| ||||| ||
Sbjct: 334 ccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgggacgt 275
Query: 452 tcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 274 tcatgaagtttgaagatcagtctgagacatcatcaagccatgg 232
>gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO1) protein (At2g27040)
mRNA, complete cds
Length = 3171
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
||||||||||| | ||||| |||| |||| ||||||||| | ||| | || |||||||
Sbjct: 2538 ttgacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaa 2597
Query: 272 tgattgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatc 331
||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| || ||
Sbjct: 2598 tgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcag 2657
Query: 332 ctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacag 391
|||| || || ||||| || || ||||||||||| || ||||||||||| ||||| | |
Sbjct: 2658 ctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtg 2717
Query: 392 ccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagt 451
|||| || |||||||| || |||||||| || ||| | ||||| || ||| ||||| ||
Sbjct: 2718 ccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgggacgt 2777
Query: 452 tcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 2778 tcatgaagtttgaagatcagtctgagacatcatcaagccatgg 2820
>gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1 protein (At2g27040)
mRNA, complete cds
Length = 2806
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
||||||||||| | ||||| |||| |||| ||||||||| | ||| | || |||||||
Sbjct: 2408 ttgacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaa 2467
Query: 272 tgattgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatc 331
||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| || ||
Sbjct: 2468 tgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcag 2527
Query: 332 ctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacag 391
|||| || || ||||| || || ||||||||||| || ||||||||||| ||||| | |
Sbjct: 2528 ctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtg 2587
Query: 392 ccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagt 451
|||| || |||||||| || |||||||| || ||| | ||||| || ||| ||||| ||
Sbjct: 2588 ccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgggacgt 2647
Query: 452 tcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 2648 tcatgaagtttgaagatcagtctgagacatcatcaagccatgg 2690
>emb|AX505699.1| Sequence 394 from Patent WO0216655
Length = 2793
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
||||||||||| | ||||| |||| |||| ||||||||| | ||| | || |||||||
Sbjct: 2426 ttgacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaa 2485
Query: 272 tgattgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatc 331
||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| || ||
Sbjct: 2486 tgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcag 2545
Query: 332 ctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacag 391
|||| || || ||||| || || ||||||||||| || ||||||||||| ||||| | |
Sbjct: 2546 ctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtg 2605
Query: 392 ccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagt 451
|||| || |||||||| || |||||||| || ||| | ||||| || ||| ||||| ||
Sbjct: 2606 ccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgggacgt 2665
Query: 452 tcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 2666 tcatgaagtttgaagatcagtctgagacatcatcaagccatgg 2708
>emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS63ZA02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 838
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
||||||||||| | ||||| |||| |||| ||||||||| | ||| | || |||||||
Sbjct: 252 ttgacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaa 311
Query: 272 tgattgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatc 331
||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| || ||
Sbjct: 312 tgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcag 371
Query: 332 ctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacag 391
|||| || || ||||| || || ||||||||||| || ||||||||||| ||||| | |
Sbjct: 372 ctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtg 431
Query: 392 ccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagt 451
|||| || |||||||| || |||||||| || ||| | ||||| || ||| ||||| ||
Sbjct: 432 ccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgggacgt 491
Query: 452 tcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 492 tcatgaagtttgaagatcagtctgagacatcatcaagccatgg 534
>ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT2G27040 (AGO4) mRNA,
complete cds
Length = 3166
Score = 85.7 bits (43), Expect = 1e-014
Identities = 223/283 (78%)
Strand = Plus / Plus
Query: 212 ttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatgctggaa 271
||||||||||| | ||||| |||| |||| ||||||||| | ||| | || |||||||
Sbjct: 2538 ttgacaacaaaatatgtcacccaaagaacaatgatttctacctctgtgctcacgctggaa 2597
Query: 272 tgattgggactaccaggccaactcactatcacatcctgcatgacgagataggcttcaatc 331
||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| || ||
Sbjct: 2598 tgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggtttttcag 2657
Query: 332 ctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagcacaacag 391
|||| || || ||||| || || ||||||||||| || ||||||||||| ||||| | |
Sbjct: 2658 ctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagcaccagtg 2717
Query: 392 ccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggttgggcagt 451
|||| || |||||||| || |||||||| || ||| | ||||| || ||| ||||| ||
Sbjct: 2718 ccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagcttgggacgt 2777
Query: 452 tcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 2778 tcatgaagtttgaagatcagtctgagacatcatcaagccatgg 2820
>gb|AV524024.1|AV524024 AV524024 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL49a09F 3', mRNA
sequence
Length = 611
Score = 77.8 bits (39), Expect = 3e-012
Identities = 198/251 (78%)
Strand = Plus / Minus
Query: 244 gatttctacatgtgttcacatgctggaatgattgggactaccaggccaactcactatcac 303
||||||||| | ||| | || |||||||||||||| |||||| | ||||||||||| |||
Sbjct: 535 gatttctacctctgtgctcacgctggaatgattggaactacccgcccaactcactaccac 476
Query: 304 atcctgcatgacgagataggcttcaatcctgatgacctgcaggagctggtgcactcgctc 363
||||| |||| ||||| || || |||| || || ||||| || || |||||||||
Sbjct: 475 gtcctgtatgatgagattggtttttcagctgacgaacttcaggaacttgtccactcgctc 416
Query: 364 tcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctacgcc 423
|| || ||||||||||| ||||| | ||||| || |||||||| || |||||||| ||
Sbjct: 415 tcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatctgctatgct 356
Query: 424 caccttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcggagacttca 483
||| | ||||| || ||| ||||| |||||| ||||| || || ||| ||||| |||
Sbjct: 355 cacttggcagctgctcagcttgggacgttcatgaagtttgaagatcagtctgagacatca 296
Query: 484 tctagccatgg 494
|| ||||||||
Sbjct: 295 tcaagccatgg 285
>gb|AV523915.1|AV523915 AV523915 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL43g03F 3', mRNA
sequence
Length = 484
Score = 75.8 bits (38), Expect = 1e-011
Identities = 182/230 (79%)
Strand = Plus / Minus
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| ||
Sbjct: 472 gctggaatgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggt 413
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
|| |||| || || ||||| || || ||||||||||| || ||||||||||| |||
Sbjct: 412 ttttcagctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaagc 353
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| | ||||| || |||||||| || |||||||| || ||| | ||||| || ||| ||
Sbjct: 352 accagtgccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagctt 293
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
||| |||||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 292 gggacgttcatgaagtttgaagatcagtctgagacatcatcaagccatgg 243
>gb|BX836647.1|BX836647 BX836647 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB75ZH02 3PRIM, mRNA sequence
Length = 922
Score = 69.9 bits (35), Expect = 7e-010
Identities = 184/231 (79%), Gaps = 2/231 (0%)
Strand = Plus / Minus
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagatagg- 323
|||||||||||||| |||||| | ||||||||||| ||| ||||| |||| ||||| ||
Sbjct: 524 gctggaatgattggaactacccgcccaactcactaccacgtcctgtatgatgagattggt 465
Query: 324 cttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggag 383
||| | |||| || || ||||| || || ||||||||||| || ||||||||||| ||
Sbjct: 464 ctttca-gctgacgaacttcaggaacttgtccactcgctctcctatgtgtaccaaagaag 406
Query: 384 cacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggt 443
||| | ||||| || |||||||| || |||||||| || ||| | ||||| || ||| |
Sbjct: 405 caccagtgccatttctgttgttgcgccgatctgctatgctcacttggcagctgctcagct 346
Query: 444 tgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|||| |||||| ||||| || || ||| ||||| ||||| ||||||||
Sbjct: 345 tgggacgttcatgaagtttgaagatcagtctgagacatcatcaagccatgg 295
>gb|BE528457.1|BE528457 M79F16STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600037559R1 5', mRNA sequence
Length = 240
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Plus
Query: 355 cactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatc 414
||||||||||| || ||||||||||| ||||| | ||||| || |||||||| || |||
Sbjct: 21 cactcgctctcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatc 80
Query: 415 tgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcg 474
||||| || ||| | ||||| || ||| ||||| |||||| ||||| || || |||
Sbjct: 81 tgctatgctcacttggcagctgctcagcttgggacgttcatgaagtttgaagatcagtct 140
Query: 475 gagacttcatctagccatgg 494
||||| ||||| ||||||||
Sbjct: 141 gagacatcatcaagccatgg 160
>gb|AV523023.1|AV523023 AV523023 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL13c04F 3', mRNA
sequence
Length = 462
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Minus
Query: 355 cactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatc 414
||||||||||| || ||||||||||| ||||| | ||||| || |||||||| || |||
Sbjct: 406 cactcgctctcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatc 347
Query: 415 tgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcg 474
||||| || ||| | ||||| || ||| ||||| |||||| ||||| || || |||
Sbjct: 346 tgctatgctcacttggcagctgctcagcttgggacgttcatgaagtttgaagatcagtct 287
Query: 475 gagacttcatctagccatgg 494
||||| ||||| ||||||||
Sbjct: 286 gagacatcatcaagccatgg 267
>gb|AV546094.1|AV546094 AV546094 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL08d06F 3', mRNA sequence
Length = 479
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Minus
Query: 355 cactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatc 414
||||||||||| || ||||||||||| ||||| | ||||| || |||||||| || |||
Sbjct: 475 cactcgctctcctatgtgtaccaaagaagcaccagtgccatttctgttgttgcgccgatc 416
Query: 415 tgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgacgagatgtcg 474
||||| || ||| | ||||| || ||| ||||| |||||| ||||| || || |||
Sbjct: 415 tgctatgctcacttggcagctgctcagcttgggacgttcatgaagtttgaagatcagtct 356
Query: 475 gagacttcatctagccatgg 494
||||| ||||| ||||||||
Sbjct: 355 gagacatcatcaagccatgg 336
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 358,275
Number of Sequences: 1013581
Number of extensions: 358275
Number of successful extensions: 24070
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24037
Number of HSP's gapped (non-prelim): 33
length of query: 867
length of database: 908,940,872
effective HSP length: 20
effective length of query: 847
effective length of database: 888,669,252
effective search space: 752702856444
effective search space used: 752702856444
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)