BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX285604.1| Arabidopsis thaliana T-DNA flanking sequenc... 68 4e-009
gb|BT003958.1| Arabidopsis thaliana clone RAFL15-11-H21 (R2... 68 4e-009
gb|BT005058.1| Arabidopsis thaliana clone U20780 putative p... 68 4e-009
dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosom... 68 4e-009
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 68 4e-009
ref|NM_112184.2| Arabidopsis thaliana SKS11; copper ion bin... 68 4e-009
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 68 4e-009
gb|BH864437.1|BH864437 SALK_096049 Arabidopsis thaliana TDN... 66 2e-008
emb|BX002910.1| Arabidopsis thaliana T-DNA flanking sequenc... 66 2e-008
emb|BX285605.1| Arabidopsis thaliana T-DNA flanking sequenc... 66 2e-008
gb|CB259676.1|CB259676 30-E9624-013-004-L07-T7R MPIZ-ADIS-0... 66 2e-008
gb|AY056409.1| Arabidopsis thaliana AT3g13400/MRP15_3 mRNA,... 66 2e-008
gb|AY072225.1| Arabidopsis thaliana putative pollen specifi... 66 2e-008
gb|AY096473.1| Arabidopsis thaliana putative pollen-specifi... 66 2e-008
ref|NM_112185.2| Arabidopsis thaliana SKS13; copper ion bin... 66 2e-008
emb|AL084275.1|CNS00PAT Arabidopsis thaliana genome survey ... 60 9e-007
emb|BX000300.1| Arabidopsis thaliana transposon insertion S... 60 9e-007
emb|BX295228.1| Arabidopsis thaliana transposon insertion S... 60 9e-007
emb|BX290385.1| Arabidopsis thaliana T-DNA flanking sequenc... 52 2e-004
gb|AF367325.1| Arabidopsis thaliana At1g55570/T5A14_1 mRNA,... 48 0.004
gb|AY133602.1| Arabidopsis thaliana At1g55570/T5A14_1 mRNA,... 48 0.004
gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14,... 48 0.004
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 48 0.004
ref|NM_104433.2| Arabidopsis thaliana SKS12; copper ion bin... 48 0.004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.004
gb|AV797263.1|AV797263 AV797263 RAFL9 Arabidopsis thaliana ... 46 0.014
gb|AV530346.1|AV530346 AV530346 Arabidopsis thaliana flower... 46 0.014
gb|AV535618.1|AV535618 AV535618 Arabidopsis thaliana flower... 46 0.014
gb|BP639266.1|BP639266 BP639266 RAFL19 Arabidopsis thaliana... 46 0.014
>emb|BX285604.1| Arabidopsis thaliana T-DNA flanking sequence GK-384A09-017267,
genomic survey sequence
Length = 121
Score = 67.9 bits (34), Expect = 4e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 51 ggcccaacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagc 110
|||| ||||| ||||| || ||||| ||||| |||||||||||||||| ||||||||||
Sbjct: 119 ggcctaacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagc 60
Query: 111 tcgcca 116
||||||
Sbjct: 59 tcgcca 54
>gb|BT003958.1| Arabidopsis thaliana clone RAFL15-11-H21 (R20780) putative
pectinesterase (pectin methylesterase) family protein
(At3g13390) mRNA, complete cds
Length = 2083
Score = 67.9 bits (34), Expect = 4e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| ||||| || || |||| ||||| ||||| || ||||||||||| ||
Sbjct: 1031 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 1090
Query: 86 atcaacatcacccgcaccatcaagct 111
||||||||||| ||||||||||||||
Sbjct: 1091 atcaacatcacacgcaccatcaagct 1116
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 1321 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1362
>gb|BT005058.1| Arabidopsis thaliana clone U20780 putative pectinesterase (pectin
methylesterase) family protein (At3g13390) mRNA, complete
cds
Length = 1696
Score = 67.9 bits (34), Expect = 4e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| ||||| || || |||| ||||| ||||| || ||||||||||| ||
Sbjct: 985 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 1044
Query: 86 atcaacatcacccgcaccatcaagct 111
||||||||||| ||||||||||||||
Sbjct: 1045 atcaacatcacacgcaccatcaagct 1070
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 1275 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1316
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
Length = 83287
Score = 67.9 bits (34), Expect = 4e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| ||||| || || |||| ||||| ||||| || ||||||||||| ||
Sbjct: 6147 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 6088
Query: 86 atcaacatcacccgcaccatcaagct 111
||||||||||| ||||||||||||||
Sbjct: 6087 atcaacatcacacgcaccatcaagct 6062
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 10480 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 10539
Query: 116 a 116
|
Sbjct: 10540 a 10540
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 5857 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 5816
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 67.9 bits (34), Expect = 4e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| ||||| || || |||| ||||| ||||| || ||||||||||| ||
Sbjct: 4345523 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 4345464
Query: 86 atcaacatcacccgcaccatcaagct 111
||||||||||| ||||||||||||||
Sbjct: 4345463 atcaacatcacacgcaccatcaagct 4345438
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 4349856 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 4349915
Query: 116 a 116
|
Sbjct: 4349916 a 4349916
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 4345233 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 4345192
>ref|NM_112184.2| Arabidopsis thaliana SKS11; copper ion binding AT3G13390 (SKS11)
mRNA, complete cds
Length = 2067
Score = 67.9 bits (34), Expect = 4e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| ||||| || || |||| ||||| ||||| || ||||||||||| ||
Sbjct: 1031 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 1090
Query: 86 atcaacatcacccgcaccatcaagct 111
||||||||||| ||||||||||||||
Sbjct: 1091 atcaacatcacacgcaccatcaagct 1116
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 1321 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1362
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 67.9 bits (34), Expect = 4e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| ||||| || || |||| ||||| ||||| || ||||||||||| ||
Sbjct: 4352224 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 4352165
Query: 86 atcaacatcacccgcaccatcaagct 111
||||||||||| ||||||||||||||
Sbjct: 4352164 atcaacatcacacgcaccatcaagct 4352139
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 4356557 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 4356616
Query: 116 a 116
|
Sbjct: 4356617 a 4356617
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 4351934 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 4351893
>gb|BH864437.1|BH864437 SALK_096049 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_096049, DNA sequence
Length = 62
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 51 ggcccaacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagc 110
|||| ||||| ||||| || ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 2 ggcctaaccctcagggatcttaccactacggaaagatcaacatcacacgcaccatcaagc 61
Query: 111 t 111
|
Sbjct: 62 t 62
>emb|BX002910.1| Arabidopsis thaliana T-DNA flanking sequence GK-368A09-017042,
genomic survey sequence
Length = 245
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 148 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 89
Query: 116 a 116
|
Sbjct: 88 a 88
>emb|BX285605.1| Arabidopsis thaliana T-DNA flanking sequence GK-384A09-017271,
genomic survey sequence
Length = 492
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 148 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 89
Query: 116 a 116
|
Sbjct: 88 a 88
>gb|CB259676.1|CB259676 30-E9624-013-004-L07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770L074Q 5-PRIME, mRNA sequence
Length = 527
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 178 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 237
Query: 116 a 116
|
Sbjct: 238 a 238
>gb|AY056409.1| Arabidopsis thaliana AT3g13400/MRP15_3 mRNA, complete cds
Length = 1879
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 1131 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1190
Query: 116 a 116
|
Sbjct: 1191 a 1191
>gb|AY072225.1| Arabidopsis thaliana putative pollen specific protein (At3g13400)
mRNA, complete cds
Length = 1895
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 1131 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1190
Query: 116 a 116
|
Sbjct: 1191 a 1191
>gb|AY096473.1| Arabidopsis thaliana putative pollen-specific protein (At3g13400)
mRNA, complete cds
Length = 1687
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 1012 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1071
Query: 116 a 116
|
Sbjct: 1072 a 1072
>ref|NM_112185.2| Arabidopsis thaliana SKS13; copper ion binding AT3G13400 (SKS13)
mRNA, complete cds
Length = 1898
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 56 aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
||||| ||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 1131 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1190
Query: 116 a 116
|
Sbjct: 1191 a 1191
>emb|AL084275.1|CNS00PAT Arabidopsis thaliana genome survey sequence T7 end of BAC F8I10 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 248
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 120 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 79
>emb|BX000300.1| Arabidopsis thaliana transposon insertion STS SM_3.21771, sequence
tagged site
Length = 360
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 197 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 238
>emb|BX295228.1| Arabidopsis thaliana transposon insertion STS SM_3.2507, sequence
tagged site
Length = 300
Score = 60.0 bits (30), Expect = 9e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 195 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 236
>emb|BX290385.1| Arabidopsis thaliana T-DNA flanking sequence GK-435H06-018190,
genomic survey sequence
Length = 409
Score = 52.0 bits (26), Expect = 2e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| ||||| || || |||| ||||| ||||| || ||||| || || ||
Sbjct: 270 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccaatagggaaag 211
Query: 86 atcaacatcacccgcaccatcaagct 111
||||||||||| ||||||||||||||
Sbjct: 210 atcaacatcacacgcaccatcaagct 185
>gb|AF367325.1| Arabidopsis thaliana At1g55570/T5A14_1 mRNA, complete cds
Length = 2088
Score = 48.1 bits (24), Expect = 0.004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| |||||||| || | || ||||| || || |||||||||||||| |
Sbjct: 1103 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 1162
Query: 86 atcaacatcacccgcaccatcaagctcg 113
|| || ||||| ||||||||||||||||
Sbjct: 1163 attaatatcactcgcaccatcaagctcg 1190
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 1698 gggacgaatacaacatgccggagacaagcct 1728
>gb|AY133602.1| Arabidopsis thaliana At1g55570/T5A14_1 mRNA, complete cds
Length = 1668
Score = 48.1 bits (24), Expect = 0.004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| |||||||| || | || ||||| || || |||||||||||||| |
Sbjct: 988 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 1047
Query: 86 atcaacatcacccgcaccatcaagctcg 113
|| || ||||| ||||||||||||||||
Sbjct: 1048 attaatatcactcgcaccatcaagctcg 1075
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 1583 gggacgaatacaacatgccggagacaagcct 1613
>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence
Length = 87967
Score = 48.1 bits (24), Expect = 0.004
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| |||||||| || | || ||||| || || |||||||||||||| |
Sbjct: 11933 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 11874
Query: 86 atcaacatcacccgcaccatcaagctcg 113
|| || ||||| ||||||||||||||||
Sbjct: 11873 attaatatcactcgcaccatcaagctcg 11846
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 11250 gggacgaatacaacatgccggagacaagcct 11220
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 48.1 bits (24), Expect = 0.004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| |||||||| || | || ||||| || || |||||||||||||| |
Sbjct: 5118435 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 5118494
Query: 86 atcaacatcacccgcaccatcaagctcg 113
|| || ||||| ||||||||||||||||
Sbjct: 5118495 attaatatcactcgcaccatcaagctcg 5118522
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 5119118 gggacgaatacaacatgccggagacaagcct 5119148
>ref|NM_104433.2| Arabidopsis thaliana SKS12; copper ion binding AT1G55570 (SKS12)
mRNA, complete cds
Length = 2083
Score = 48.1 bits (24), Expect = 0.004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| |||||||| || | || ||||| || || |||||||||||||| |
Sbjct: 1098 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 1157
Query: 86 atcaacatcacccgcaccatcaagctcg 113
|| || ||||| ||||||||||||||||
Sbjct: 1158 attaatatcactcgcaccatcaagctcg 1185
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 1693 gggacgaatacaacatgccggagacaagcct 1723
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||| |||| |||||||| || | || ||||| || || |||||||||||||| |
Sbjct: 20762669 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 20762728
Query: 86 atcaacatcacccgcaccatcaagctcg 113
|| || ||||| ||||||||||||||||
Sbjct: 20762729 attaatatcactcgcaccatcaagctcg 20762756
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 20763352 gggacgaatacaacatgccggagacaagcct 20763382
>gb|AV797263.1|AV797263 AV797263 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-11-G24 3',
mRNA sequence
Length = 428
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 391 gggacgaatacaacatgccggagacaagcct 361
>gb|AV530346.1|AV530346 AV530346 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB002b10F 3', mRNA sequence
Length = 314
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 299 gggacgaatacaacatgccggagacaagcct 269
>gb|AV535618.1|AV535618 AV535618 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB099c04F 3', mRNA sequence
Length = 284
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 273 gggacgaatacaacatgccggagacaagcct 243
>gb|BP639266.1|BP639266 BP639266 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-47-C23 3',
mRNA sequence
Length = 367
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 618 gggacgagtacaacatgccggagactagcct 648
||||||| ||||||||||||||||| |||||
Sbjct: 282 gggacgaatacaacatgccggagacaagcct 252
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 432,280
Number of Sequences: 1013581
Number of extensions: 432280
Number of successful extensions: 33963
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33110
Number of HSP's gapped (non-prelim): 853
length of query: 1195
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1175
effective length of database: 888,669,252
effective search space: 1044186371100
effective search space used: 1044186371100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)