BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2404725.2.9
         (1195 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|BX285604.1|  Arabidopsis thaliana T-DNA flanking sequenc...    68   4e-009
gb|BT003958.1|  Arabidopsis thaliana clone RAFL15-11-H21 (R2...    68   4e-009
gb|BT005058.1|  Arabidopsis thaliana clone U20780 putative p...    68   4e-009
dbj|AP000603.1|  Arabidopsis thaliana genomic DNA, chromosom...    68   4e-009
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    68   4e-009
ref|NM_112184.2|  Arabidopsis thaliana SKS11; copper ion bin...    68   4e-009
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    68   4e-009
gb|BH864437.1|BH864437  SALK_096049 Arabidopsis thaliana TDN...    66   2e-008
emb|BX002910.1|  Arabidopsis thaliana T-DNA flanking sequenc...    66   2e-008
emb|BX285605.1|  Arabidopsis thaliana T-DNA flanking sequenc...    66   2e-008
gb|CB259676.1|CB259676  30-E9624-013-004-L07-T7R MPIZ-ADIS-0...    66   2e-008
gb|AY056409.1|  Arabidopsis thaliana AT3g13400/MRP15_3 mRNA,...    66   2e-008
gb|AY072225.1|  Arabidopsis thaliana putative pollen specifi...    66   2e-008
gb|AY096473.1|  Arabidopsis thaliana putative pollen-specifi...    66   2e-008
ref|NM_112185.2|  Arabidopsis thaliana SKS13; copper ion bin...    66   2e-008
emb|AL084275.1|CNS00PAT  Arabidopsis thaliana genome survey ...    60   9e-007
emb|BX000300.1|  Arabidopsis thaliana transposon insertion S...    60   9e-007
emb|BX295228.1|  Arabidopsis thaliana transposon insertion S...    60   9e-007
emb|BX290385.1|  Arabidopsis thaliana T-DNA flanking sequenc...    52   2e-004
gb|AF367325.1|  Arabidopsis thaliana At1g55570/T5A14_1 mRNA,...    48   0.004
gb|AY133602.1|  Arabidopsis thaliana At1g55570/T5A14_1 mRNA,...    48   0.004
gb|AC005223.1|  Arabidopsis thaliana chromosome I BAC T5A14,...    48   0.004
gb|AE005173.1|  Arabidopsis thaliana chromosome 1, bottom ar...    48   0.004
ref|NM_104433.2|  Arabidopsis thaliana SKS12; copper ion bin...    48   0.004
ref|NC_003070.5|  Arabidopsis thaliana chromosome 1, complet...    48   0.004
gb|AV797263.1|AV797263  AV797263 RAFL9 Arabidopsis thaliana ...    46   0.014
gb|AV530346.1|AV530346  AV530346 Arabidopsis thaliana flower...    46   0.014
gb|AV535618.1|AV535618  AV535618 Arabidopsis thaliana flower...    46   0.014
gb|BP639266.1|BP639266  BP639266 RAFL19 Arabidopsis thaliana...    46   0.014
>emb|BX285604.1| Arabidopsis thaliana T-DNA flanking sequence GK-384A09-017267,
           genomic survey sequence
          Length = 121

 Score = 67.9 bits (34), Expect = 4e-009
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 51  ggcccaacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagc 110
           |||| ||||| ||||| || ||||| |||||  |||||||||||||||| ||||||||||
Sbjct: 119 ggcctaacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagc 60

                 
Query: 111 tcgcca 116
           ||||||
Sbjct: 59  tcgcca 54
>gb|BT003958.1| Arabidopsis thaliana clone RAFL15-11-H21 (R20780) putative
            pectinesterase (pectin methylesterase) family protein
            (At3g13390) mRNA, complete cds
          Length = 2083

 Score = 67.9 bits (34), Expect = 4e-009
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                        
Query: 26   tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
            |||||| |||| ||||| || ||  |||| ||||| ||||| || |||||||||||  ||
Sbjct: 1031 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 1090

                                      
Query: 86   atcaacatcacccgcaccatcaagct 111
            ||||||||||| ||||||||||||||
Sbjct: 1091 atcaacatcacacgcaccatcaagct 1116

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 313  ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
            ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 1321 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1362
>gb|BT005058.1| Arabidopsis thaliana clone U20780 putative pectinesterase (pectin
            methylesterase) family protein (At3g13390) mRNA, complete
            cds
          Length = 1696

 Score = 67.9 bits (34), Expect = 4e-009
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                        
Query: 26   tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
            |||||| |||| ||||| || ||  |||| ||||| ||||| || |||||||||||  ||
Sbjct: 985  tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 1044

                                      
Query: 86   atcaacatcacccgcaccatcaagct 111
            ||||||||||| ||||||||||||||
Sbjct: 1045 atcaacatcacacgcaccatcaagct 1070

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 313  ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
            ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 1275 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1316
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
          Length = 83287

 Score = 67.9 bits (34), Expect = 4e-009
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 26   tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
            |||||| |||| ||||| || ||  |||| ||||| ||||| || |||||||||||  ||
Sbjct: 6147 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 6088

                                      
Query: 86   atcaacatcacccgcaccatcaagct 111
            ||||||||||| ||||||||||||||
Sbjct: 6087 atcaacatcacacgcaccatcaagct 6062

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 56    aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
             ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 10480 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 10539

              
Query: 116   a 116
             |
Sbjct: 10540 a 10540

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 313  ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
            ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 5857 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 5816
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 67.9 bits (34), Expect = 4e-009
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                           
Query: 26      tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
               |||||| |||| ||||| || ||  |||| ||||| ||||| || |||||||||||  ||
Sbjct: 4345523 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 4345464

                                         
Query: 86      atcaacatcacccgcaccatcaagct 111
               ||||||||||| ||||||||||||||
Sbjct: 4345463 atcaacatcacacgcaccatcaagct 4345438

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                           
Query: 56      aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
               ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 4349856 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 4349915

                
Query: 116     a 116
               |
Sbjct: 4349916 a 4349916

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                         
Query: 313     ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
               ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 4345233 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 4345192
>ref|NM_112184.2| Arabidopsis thaliana SKS11; copper ion binding AT3G13390 (SKS11)
            mRNA, complete cds
          Length = 2067

 Score = 67.9 bits (34), Expect = 4e-009
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                        
Query: 26   tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
            |||||| |||| ||||| || ||  |||| ||||| ||||| || |||||||||||  ||
Sbjct: 1031 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 1090

                                      
Query: 86   atcaacatcacccgcaccatcaagct 111
            ||||||||||| ||||||||||||||
Sbjct: 1091 atcaacatcacacgcaccatcaagct 1116

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 313  ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
            ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 1321 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1362
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 67.9 bits (34), Expect = 4e-009
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                           
Query: 26      tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
               |||||| |||| ||||| || ||  |||| ||||| ||||| || |||||||||||  ||
Sbjct: 4352224 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccactacggaaag 4352165

                                         
Query: 86      atcaacatcacccgcaccatcaagct 111
               ||||||||||| ||||||||||||||
Sbjct: 4352164 atcaacatcacacgcaccatcaagct 4352139

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                           
Query: 56      aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
               ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 4356557 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 4356616

                
Query: 116     a 116
               |
Sbjct: 4356617 a 4356617

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                         
Query: 313     ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
               ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 4351934 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 4351893
>gb|BH864437.1|BH864437 SALK_096049 Arabidopsis thaliana TDNA insertion lines Arabidopsis
           thaliana genomic clone SALK_096049, DNA sequence
          Length = 62

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 51  ggcccaacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagc 110
           |||| ||||| ||||| || |||||||||||  ||||||||||||| |||||||||||||
Sbjct: 2   ggcctaaccctcagggatcttaccactacggaaagatcaacatcacacgcaccatcaagc 61

            
Query: 111 t 111
           |
Sbjct: 62  t 62
>emb|BX002910.1| Arabidopsis thaliana T-DNA flanking sequence GK-368A09-017042,
           genomic survey sequence
          Length = 245

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 56  aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
           ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 148 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 89

            
Query: 116 a 116
           |
Sbjct: 88  a 88
>emb|BX285605.1| Arabidopsis thaliana T-DNA flanking sequence GK-384A09-017271,
           genomic survey sequence
          Length = 492

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 56  aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
           ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 148 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 89

            
Query: 116 a 116
           |
Sbjct: 88  a 88
>gb|CB259676.1|CB259676 30-E9624-013-004-L07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
           clone MPIZp770L074Q 5-PRIME, mRNA sequence
          Length = 527

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 56  aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
           ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 178 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 237

            
Query: 116 a 116
           |
Sbjct: 238 a 238
>gb|AY056409.1| Arabidopsis thaliana AT3g13400/MRP15_3 mRNA, complete cds
          Length = 1879

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 56   aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
            ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 1131 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1190

             
Query: 116  a 116
            |
Sbjct: 1191 a 1191
>gb|AY072225.1| Arabidopsis thaliana putative pollen specific protein (At3g13400)
            mRNA, complete cds
          Length = 1895

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 56   aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
            ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 1131 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1190

             
Query: 116  a 116
            |
Sbjct: 1191 a 1191
>gb|AY096473.1| Arabidopsis thaliana putative pollen-specific protein (At3g13400)
            mRNA, complete cds
          Length = 1687

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 56   aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
            ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 1012 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1071

             
Query: 116  a 116
            |
Sbjct: 1072 a 1072
>ref|NM_112185.2| Arabidopsis thaliana SKS13; copper ion binding AT3G13400 (SKS13)
            mRNA, complete cds
          Length = 1898

 Score = 65.9 bits (33), Expect = 2e-008
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 56   aacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgcc 115
            ||||| ||||| || ||||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 1131 aacccccagggatcttaccattacggaaagatcaacatcacccgtaccatcaagctcgcc 1190

             
Query: 116  a 116
            |
Sbjct: 1191 a 1191
>emb|AL084275.1|CNS00PAT Arabidopsis thaliana genome survey sequence T7 end of BAC F8I10 of
           IGF library from strain Columbia of Arabidopsis
           thaliana, genomic survey sequence
          Length = 248

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
           ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 120 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 79
>emb|BX000300.1| Arabidopsis thaliana transposon insertion STS SM_3.21771, sequence
           tagged site
          Length = 360

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
           ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 197 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 238
>emb|BX295228.1| Arabidopsis thaliana transposon insertion STS SM_3.2507, sequence
           tagged site
          Length = 300

 Score = 60.0 bits (30), Expect = 9e-007
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 313 ccgcaccttcatcgaggtggtcttcgagaaccccgagaagag 354
           ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 195 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 236
>emb|BX290385.1| Arabidopsis thaliana T-DNA flanking sequence GK-435H06-018190,
           genomic survey sequence
          Length = 409

 Score = 52.0 bits (26), Expect = 2e-004
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 26  tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
           |||||| |||| ||||| || ||  |||| ||||| ||||| || ||||| || ||  ||
Sbjct: 270 tggaacttgaccgccagtgcagccaggcctaaccctcagggatcttaccaatagggaaag 211

                                     
Query: 86  atcaacatcacccgcaccatcaagct 111
           ||||||||||| ||||||||||||||
Sbjct: 210 atcaacatcacacgcaccatcaagct 185
>gb|AF367325.1| Arabidopsis thaliana At1g55570/T5A14_1 mRNA, complete cds
          Length = 2088

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                        
Query: 26   tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
            |||||| |||| |||||||| ||  | || ||||| || || ||||||||||||||  | 
Sbjct: 1103 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 1162

                                        
Query: 86   atcaacatcacccgcaccatcaagctcg 113
            || || ||||| ||||||||||||||||
Sbjct: 1163 attaatatcactcgcaccatcaagctcg 1190

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 618  gggacgagtacaacatgccggagactagcct 648
            ||||||| ||||||||||||||||| |||||
Sbjct: 1698 gggacgaatacaacatgccggagacaagcct 1728
>gb|AY133602.1| Arabidopsis thaliana At1g55570/T5A14_1 mRNA, complete cds
          Length = 1668

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                        
Query: 26   tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
            |||||| |||| |||||||| ||  | || ||||| || || ||||||||||||||  | 
Sbjct: 988  tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 1047

                                        
Query: 86   atcaacatcacccgcaccatcaagctcg 113
            || || ||||| ||||||||||||||||
Sbjct: 1048 attaatatcactcgcaccatcaagctcg 1075

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 618  gggacgagtacaacatgccggagactagcct 648
            ||||||| ||||||||||||||||| |||||
Sbjct: 1583 gggacgaatacaacatgccggagacaagcct 1613
>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence
          Length = 87967

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                         
Query: 26    tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
             |||||| |||| |||||||| ||  | || ||||| || || ||||||||||||||  | 
Sbjct: 11933 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 11874

                                         
Query: 86    atcaacatcacccgcaccatcaagctcg 113
             || || ||||| ||||||||||||||||
Sbjct: 11873 attaatatcactcgcaccatcaagctcg 11846

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 618   gggacgagtacaacatgccggagactagcct 648
             ||||||| ||||||||||||||||| |||||
Sbjct: 11250 gggacgaatacaacatgccggagacaagcct 11220
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
          Length = 14668883

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                           
Query: 26      tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
               |||||| |||| |||||||| ||  | || ||||| || || ||||||||||||||  | 
Sbjct: 5118435 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 5118494

                                           
Query: 86      atcaacatcacccgcaccatcaagctcg 113
               || || ||||| ||||||||||||||||
Sbjct: 5118495 attaatatcactcgcaccatcaagctcg 5118522

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 618     gggacgagtacaacatgccggagactagcct 648
               ||||||| ||||||||||||||||| |||||
Sbjct: 5119118 gggacgaatacaacatgccggagacaagcct 5119148
>ref|NM_104433.2| Arabidopsis thaliana SKS12; copper ion binding AT1G55570 (SKS12)
            mRNA, complete cds
          Length = 2083

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                        
Query: 26   tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
            |||||| |||| |||||||| ||  | || ||||| || || ||||||||||||||  | 
Sbjct: 1098 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 1157

                                        
Query: 86   atcaacatcacccgcaccatcaagctcg 113
            || || ||||| ||||||||||||||||
Sbjct: 1158 attaatatcactcgcaccatcaagctcg 1185

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 618  gggacgagtacaacatgccggagactagcct 648
            ||||||| ||||||||||||||||| |||||
Sbjct: 1693 gggacgaatacaacatgccggagacaagcct 1723
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
          Length = 30432563

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                            
Query: 26       tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
                |||||| |||| |||||||| ||  | || ||||| || || ||||||||||||||  | 
Sbjct: 20762669 tggaacttgacagccagcgccgctagacctaacccacaaggctcgtaccactacggaaaa 20762728

                                            
Query: 86       atcaacatcacccgcaccatcaagctcg 113
                || || ||||| ||||||||||||||||
Sbjct: 20762729 attaatatcactcgcaccatcaagctcg 20762756

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 618      gggacgagtacaacatgccggagactagcct 648
                ||||||| ||||||||||||||||| |||||
Sbjct: 20763352 gggacgaatacaacatgccggagacaagcct 20763382
>gb|AV797263.1|AV797263 AV797263 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-11-G24 3',
           mRNA sequence
          Length = 428

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 618 gggacgagtacaacatgccggagactagcct 648
           ||||||| ||||||||||||||||| |||||
Sbjct: 391 gggacgaatacaacatgccggagacaagcct 361
>gb|AV530346.1|AV530346 AV530346 Arabidopsis thaliana flower buds Columbia Arabidopsis
           thaliana cDNA clone FB002b10F 3', mRNA sequence
          Length = 314

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 618 gggacgagtacaacatgccggagactagcct 648
           ||||||| ||||||||||||||||| |||||
Sbjct: 299 gggacgaatacaacatgccggagacaagcct 269
>gb|AV535618.1|AV535618 AV535618 Arabidopsis thaliana flower buds Columbia Arabidopsis
           thaliana cDNA clone FB099c04F 3', mRNA sequence
          Length = 284

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 618 gggacgagtacaacatgccggagactagcct 648
           ||||||| ||||||||||||||||| |||||
Sbjct: 273 gggacgaatacaacatgccggagacaagcct 243
>gb|BP639266.1|BP639266 BP639266 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-47-C23 3',
           mRNA sequence
          Length = 367

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 618 gggacgagtacaacatgccggagactagcct 648
           ||||||| ||||||||||||||||| |||||
Sbjct: 282 gggacgaatacaacatgccggagacaagcct 252
  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 432,280
Number of Sequences: 1013581
Number of extensions: 432280
Number of successful extensions: 33963
Number of sequences better than  0.5: 30
Number of HSP's better than  0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33110
Number of HSP's gapped (non-prelim): 853
length of query: 1195
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1175
effective length of database: 888,669,252
effective search space: 1044186371100
effective search space used: 1044186371100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)