BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI993183.1|AI993183 701495632 A. thaliana, Ohio State cl... 46 0.012
gb|AV537452.1|AV537452 AV537452 Arabidopsis thaliana roots ... 46 0.012
gb|AV554316.1|AV554316 AV554316 Arabidopsis thaliana roots ... 46 0.012
gb|AV558425.1|AV558425 AV558425 Arabidopsis thaliana green ... 46 0.012
gb|AY094401.1| Arabidopsis thaliana AT5g66920/MUD21_18 mRNA... 46 0.012
gb|BT000862.1| Arabidopsis thaliana At5g66920/MUD21_18 mRNA... 46 0.012
gb|AY084759.1| Arabidopsis thaliana clone 116979 mRNA, comp... 46 0.012
emb|BX831134.1|CNS09ZEQ Arabidopsis thaliana Full-length cD... 46 0.012
emb|BX829416.1|CNS0A1XP Arabidopsis thaliana Full-length cD... 46 0.012
dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.012
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.012
ref|NM_126091.2| Arabidopsis thaliana SKS17; copper ion bin... 46 0.012
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.012
gb|AQ961414.1|AQ961414 LERFL11TR LERA Arabidopsis thaliana ... 42 0.19
gb|BH613435.1|BH613435 SALK_034253 Arabidopsis thaliana TDN... 42 0.19
gb|BH791219.1|BH791219 SALK_058931.54.50.x Arabidopsis thal... 42 0.19
gb|BH906642.1|BH906642 SALK_035084.54.75.x Arabidopsis thal... 42 0.19
gb|CL488111.1|CL488111 SAIL_504_F06.v1 SAIL Collection Arab... 42 0.19
gb|CW796288.1|CW796288 WiscDsLox433G5 Arabidopsis thaliana ... 42 0.19
gb|CW802430.1|CW802430 WiscDsLox481-484A24 Arabidopsis thal... 42 0.19
gb|AA586054.1|AA586054 28703 Lambda-PRL2 Arabidopsis thalia... 42 0.19
gb|BP563974.1|BP563974 BP563974 RAFL14 Arabidopsis thaliana... 42 0.19
gb|BP573529.1|BP573529 BP573529 RAFL14 Arabidopsis thaliana... 42 0.19
gb|BP573593.1|BP573593 BP573593 RAFL14 Arabidopsis thaliana... 42 0.19
gb|BP585858.1|BP585858 BP585858 RAFL15 Arabidopsis thaliana... 42 0.19
gb|BP612322.1|BP612322 BP612322 RAFL16 Arabidopsis thaliana... 42 0.19
gb|BP614107.1|BP614107 BP614107 RAFL16 Arabidopsis thaliana... 42 0.19
emb|AL391147.1|ATF5E19 Arabidopsis thaliana DNA chromosome ... 42 0.19
ref|NM_121684.2| Arabidopsis thaliana unknown protein AT5G1... 42 0.19
>gb|AI993183.1|AI993183 701495632 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701495632, mRNA sequence
Length = 521
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 497 tcattgttctgaaatacaatttc 475
>gb|AV537452.1|AV537452 AV537452 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ06c11F 3', mRNA sequence
Length = 617
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 537 tcattgttctgaaatacaatttc 559
>gb|AV554316.1|AV554316 AV554316 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ87c10R 5', mRNA sequence
Length = 463
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 285 tcattgttctgaaatacaatttc 263
>gb|AV558425.1|AV558425 AV558425 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ098d11F 3', mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 547 tcattgttctgaaatacaatttc 569
>gb|AY094401.1| Arabidopsis thaliana AT5g66920/MUD21_18 mRNA, complete cds
Length = 2010
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 1420 tcattgttctgaaatacaatttc 1398
>gb|BT000862.1| Arabidopsis thaliana At5g66920/MUD21_18 mRNA, complete cds
Length = 1641
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 1307 tcattgttctgaaatacaatttc 1285
>gb|AY084759.1| Arabidopsis thaliana clone 116979 mRNA, complete sequence
Length = 1930
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 1378 tcattgttctgaaatacaatttc 1356
>emb|BX831134.1|CNS09ZEQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS5ZH03 of Adult vegetative tissue of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1832
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 1365 tcattgttctgaaatacaatttc 1343
>emb|BX829416.1|CNS0A1XP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB12ZC01 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1846
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 1298 tcattgttctgaaatacaatttc 1276
>dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21
Length = 69850
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 67304 tcattgttctgaaatacaatttc 67282
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 23612899 tcattgttctgaaatacaatttc 23612877
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 5280784 accaccaaagagaccaaagcc 5280764
>ref|NM_126091.2| Arabidopsis thaliana SKS17; copper ion binding AT5G66920 (SKS17)
mRNA, complete cds
Length = 2010
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 1420 tcattgttctgaaatacaatttc 1398
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 898 tcattgttctgaaatacaatttc 920
|||||||||||||||||||||||
Sbjct: 26742052 tcattgttctgaaatacaatttc 26742030
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 5517811 accaccaaagagaccaaagcc 5517791
>gb|AQ961414.1|AQ961414 LERFL11TR LERA Arabidopsis thaliana genomic clone LERFL11, DNA
sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 25 accaccaaagagaccaaagcc 45
>gb|BH613435.1|BH613435 SALK_034253 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_034253, DNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 164 accaccaaagagaccaaagcc 144
>gb|BH791219.1|BH791219 SALK_058931.54.50.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_058931.54.50.x,
DNA sequence
Length = 348
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 162 accaccaaagagaccaaagcc 142
>gb|BH906642.1|BH906642 SALK_035084.54.75.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_035084.54.75.x,
DNA sequence
Length = 290
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 178 accaccaaagagaccaaagcc 158
>gb|CL488111.1|CL488111 SAIL_504_F06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_504_F06.v1, DNA sequence
Length = 926
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 342 accaccaaagagaccaaagcc 322
>gb|CW796288.1|CW796288 WiscDsLox433G5 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 750
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 600 accaccaaagagaccaaagcc 580
>gb|CW802430.1|CW802430 WiscDsLox481-484A24 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 750
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 380 accaccaaagagaccaaagcc 360
>gb|AA586054.1|AA586054 28703 Lambda-PRL2 Arabidopsis thaliana cDNA clone 4C10XP 3', mRNA
sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 237 accaccaaagagaccaaagcc 257
>gb|BP563974.1|BP563974 BP563974 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-05-H22 3',
mRNA sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 264 accaccaaagagaccaaagcc 244
>gb|BP573529.1|BP573529 BP573529 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-K08 3',
mRNA sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 264 accaccaaagagaccaaagcc 244
>gb|BP573593.1|BP573593 BP573593 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-N23 3',
mRNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 264 accaccaaagagaccaaagcc 244
>gb|BP585858.1|BP585858 BP585858 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-04-C20 3',
mRNA sequence
Length = 447
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 319 accaccaaagagaccaaagcc 299
>gb|BP612322.1|BP612322 BP612322 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-89-B04 3',
mRNA sequence
Length = 419
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 319 accaccaaagagaccaaagcc 299
>gb|BP614107.1|BP614107 BP614107 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-95-J17 3',
mRNA sequence
Length = 418
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 319 accaccaaagagaccaaagcc 299
>emb|AL391147.1|ATF5E19 Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project)
Length = 77976
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 51878 accaccaaagagaccaaagcc 51858
>ref|NM_121684.2| Arabidopsis thaliana unknown protein AT5G16780 mRNA, complete cds
Length = 3026
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 478 accaccaaagagaccaaagcc 498
|||||||||||||||||||||
Sbjct: 2743 accaccaaagagaccaaagcc 2763
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 427,293
Number of Sequences: 1013581
Number of extensions: 427293
Number of successful extensions: 29301
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28721
Number of HSP's gapped (non-prelim): 580
length of query: 1062
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1042
effective length of database: 888,669,252
effective search space: 925993360584
effective search space used: 925993360584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)