BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV559969.1|AV559969 AV559969 Arabidopsis thaliana green ... 107 3e-021
gb|AY099574.1| Arabidopsis thaliana glycosyl transferase, p... 107 3e-021
gb|BT010393.1| Arabidopsis thaliana At3g25140 mRNA, complet... 107 3e-021
emb|BX823546.1|CNS0A4R3 Arabidopsis thaliana Full-length cD... 107 3e-021
ref|NM_113418.3| Arabidopsis thaliana QUA1 (QUASIMODO1); tr... 107 3e-021
gb|AV559980.1|AV559980 AV559980 Arabidopsis thaliana green ... 96 1e-017
gb|BP586609.1|BP586609 BP586609 RAFL15 Arabidopsis thaliana... 96 1e-017
gb|BP588020.1|BP588020 BP588020 RAFL15 Arabidopsis thaliana... 96 1e-017
gb|BP612928.1|BP612928 BP612928 RAFL16 Arabidopsis thaliana... 96 1e-017
gb|BP620140.1|BP620140 BP620140 RAFL16 Arabidopsis thaliana... 96 1e-017
dbj|AB026647.1| Arabidopsis thaliana genomic DNA, chromosom... 96 1e-017
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 96 1e-017
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 96 1e-017
gb|AV810826.1|AV810826 AV810826 RAFL9 Arabidopsis thaliana ... 90 6e-016
gb|BP608491.1|BP608491 BP608491 RAFL16 Arabidopsis thaliana... 88 3e-015
gb|AV558460.1|AV558460 AV558460 Arabidopsis thaliana green ... 86 1e-014
gb|BP565338.1|BP565338 BP565338 RAFL14 Arabidopsis thaliana... 82 2e-013
gb|BP582600.1|BP582600 BP582600 RAFL14 Arabidopsis thaliana... 82 2e-013
gb|BP608701.1|BP608701 BP608701 RAFL16 Arabidopsis thaliana... 82 2e-013
gb|BP618000.1|BP618000 BP618000 RAFL16 Arabidopsis thaliana... 74 4e-011
gb|BP621490.1|BP621490 BP621490 RAFL16 Arabidopsis thaliana... 74 4e-011
gb|BP649569.1|BP649569 BP649569 RAFL19 Arabidopsis thaliana... 70 6e-010
gb|BH757657.1|BH757657 SALK_004353.54.95.x Arabidopsis thal... 68 2e-009
gb|BP645877.1|BP645877 BP645877 RAFL19 Arabidopsis thaliana... 62 1e-007
gb|BP602921.1|BP602921 BP602921 RAFL16 Arabidopsis thaliana... 60 6e-007
gb|BP638267.1|BP638267 BP638267 RAFL19 Arabidopsis thaliana... 56 9e-006
emb|AJ243015.1|ATH243015 Arabidopsis thaliana LGT1 gene, an... 54 4e-005
emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome... 54 4e-005
gb|AV548282.1|AV548282 AV548282 Arabidopsis thaliana roots ... 52 1e-004
gb|AV563687.1|AV563687 AV563687 Arabidopsis thaliana green ... 52 1e-004
gb|AV565879.1|AV565879 AV565879 Arabidopsis thaliana green ... 52 1e-004
gb|AY039515.1| Arabidopsis thaliana AT3g61130/T20K12_30 mRN... 52 1e-004
gb|BT000630.1| Arabidopsis thaliana unknown protein (At3g6... 52 1e-004
emb|BX824243.1|CNS0A7GQ Arabidopsis thaliana Full-length cD... 52 1e-004
ref|NM_115977.2| Arabidopsis thaliana transferase, transfer... 52 1e-004
emb|BX293081.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 6e-004
>gb|AV559969.1|AV559969 AV559969 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ126g06F 3', mRNA sequence
Length = 561
Score = 107 bits (54), Expect = 3e-021
Identities = 231/290 (79%)
Strand = Plus / Minus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| || |||||||| ||||| ||||||||| ||||||| || ||||| || || ||
Sbjct: 546 tgggcgtatggaatgaacttctttgatcttgatgcttggagaagagagaagtgcacagaa 487
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
| || || || ||||| |||| ||| ||||||||| | ||||||| || || ||| |
Sbjct: 486 gaatatcactactggcaaaatctgaacgagaacagggctctatggaaactggggacgtta 427
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
|| || || ||||||| || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct: 426 ccaccgggactgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtg 367
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
||||| || || |||||||| ||||| |||||||| ||||| | || ||||| || ||
Sbjct: 366 cttgggctgggttacaatccgagcattagcatggatgagatccgcaacgctgcagtggta 307
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| |||||||| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 306 cacttcaacggtaacatgaagccatggcttgacatagctatgaaccagtt 257
>gb|AY099574.1| Arabidopsis thaliana glycosyl transferase, putative (At3g25140) mRNA,
complete cds
Length = 1918
Score = 107 bits (54), Expect = 3e-021
Identities = 231/290 (79%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| || |||||||| ||||| ||||||||| ||||||| || ||||| || || ||
Sbjct: 1358 tgggcgtatggaatgaacttctttgatcttgatgcttggagaagagagaagtgcacagaa 1417
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
| || || || ||||| |||| ||| ||||||||| | ||||||| || || ||| |
Sbjct: 1418 gaatatcactactggcaaaatctgaacgagaacagggctctatggaaactggggacgtta 1477
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
|| || || ||||||| || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct: 1478 ccaccgggactgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtg 1537
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
||||| || || |||||||| ||||| |||||||| ||||| | || ||||| || ||
Sbjct: 1538 cttgggctgggttacaatccgagcattagcatggatgagatccgcaacgctgcagtggta 1597
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| |||||||| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 1598 cacttcaacggtaacatgaagccatggcttgacatagctatgaaccagtt 1647
>gb|BT010393.1| Arabidopsis thaliana At3g25140 mRNA, complete cds
Length = 1680
Score = 107 bits (54), Expect = 3e-021
Identities = 231/290 (79%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| || |||||||| ||||| ||||||||| ||||||| || ||||| || || ||
Sbjct: 1321 tgggcgtatggaatgaacttctttgatcttgatgcttggagaagagagaagtgcacagaa 1380
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
| || || || ||||| |||| ||| ||||||||| | ||||||| || || ||| |
Sbjct: 1381 gaatatcactactggcaaaatctgaacgagaacagggctctatggaaactggggacgtta 1440
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
|| || || ||||||| || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct: 1441 ccaccgggactgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtg 1500
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
||||| || || |||||||| ||||| |||||||| ||||| | || ||||| || ||
Sbjct: 1501 cttgggctgggttacaatccgagcattagcatggatgagatccgcaacgctgcagtggta 1560
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| |||||||| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 1561 cacttcaacggtaacatgaagccatggcttgacatagctatgaaccagtt 1610
>emb|BX823546.1|CNS0A4R3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS4ZE12 of Adult vegetative tissue of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1873
Score = 107 bits (54), Expect = 3e-021
Identities = 231/290 (79%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| || |||||||| ||||| ||||||||| ||||||| || ||||| || || ||
Sbjct: 1346 tgggcgtatggaatgaacttctttgatcttgatgcttggagaagagagaagtgcacagaa 1405
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
| || || || ||||| |||| ||| ||||||||| | ||||||| || || ||| |
Sbjct: 1406 gaatatcactactggcaaaatctgaacgagaacagggctctatggaaactggggacgtta 1465
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
|| || || ||||||| || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct: 1466 ccaccgggactgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtg 1525
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
||||| || || |||||||| ||||| |||||||| ||||| | || ||||| || ||
Sbjct: 1526 cttgggctgggttacaatccgagcattagcatggatgagatccgcaacgctgcagtggta 1585
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| |||||||| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 1586 cacttcaacggtaacatgaagccatggcttgacatagctatgaaccagtt 1635
>ref|NM_113418.3| Arabidopsis thaliana QUA1 (QUASIMODO1); transferase, transferring
glycosyl groups / transferase, transferring hexosyl
groups AT3G25140 (QUA1) mRNA, complete cds
Length = 1919
Score = 107 bits (54), Expect = 3e-021
Identities = 231/290 (79%)
Strand = Plus / Plus
Query: 15 tgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgtactgag 74
||||| || |||||||| ||||| ||||||||| ||||||| || ||||| || || ||
Sbjct: 1358 tgggcgtatggaatgaacttctttgatcttgatgcttggagaagagagaagtgcacagaa 1417
Query: 75 cagtaccattattggcagaatcagaatgagaacaggacattatggaagctaggaacgctg 134
| || || || ||||| |||| ||| ||||||||| | ||||||| || || ||| |
Sbjct: 1418 gaatatcactactggcaaaatctgaacgagaacagggctctatggaaactggggacgtta 1477
Query: 135 ccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgtt 194
|| || || ||||||| || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct: 1478 ccaccgggactgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtg 1537
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
||||| || || |||||||| ||||| |||||||| ||||| | || ||||| || ||
Sbjct: 1538 cttgggctgggttacaatccgagcattagcatggatgagatccgcaacgctgcagtggta 1597
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| |||||||| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 1598 cacttcaacggtaacatgaagccatggcttgacatagctatgaaccagtt 1647
>gb|AV559980.1|AV559980 AV559980 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ127a08F 3', mRNA sequence
Length = 523
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 416 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 357
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 356 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 297
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 296 gtaacatgaagccatggcttgacatagctatgaaccagtt 257
>gb|BP586609.1|BP586609 BP586609 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-06-P12 3',
mRNA sequence
Length = 448
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 433 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 374
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 373 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 314
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 313 gtaacatgaagccatggcttgacatagctatgaaccagtt 274
>gb|BP588020.1|BP588020 BP588020 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-44-M05 3',
mRNA sequence
Length = 413
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 350 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 291
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 290 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 231
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 230 gtaacatgaagccatggcttgacatagctatgaaccagtt 191
>gb|BP612928.1|BP612928 BP612928 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-91-F11 3',
mRNA sequence
Length = 426
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 422 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 363
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 362 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 303
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 302 gtaacatgaagccatggcttgacatagctatgaaccagtt 263
>gb|BP620140.1|BP620140 BP620140 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-36-A12 3',
mRNA sequence
Length = 446
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 431 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 372
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 371 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 312
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 311 gtaacatgaagccatggcttgacatagctatgaaccagtt 272
>dbj|AB026647.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJL12
Length = 81542
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Plus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 25443 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 25502
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 25503 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 25562
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 25563 gtaacatgaagccatggcttgacatagctatgaaccagtt 25602
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Plus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 9097237 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 9097296
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 9097297 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 9097356
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 9097357 gtaacatgaagccatggcttgacatagctatgaaccagtt 9097396
Score = 54.0 bits (27), Expect = 4e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 97 agaatgagaacaggacattatggaagctagg 127
||||||||||||||||| |||||||||||||
Sbjct: 22583511 agaatgagaacaggacactatggaagctagg 22583541
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 95.6 bits (48), Expect = 1e-017
Identities = 132/160 (82%)
Strand = Plus / Plus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 9156420 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 9156479
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 9156480 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 9156539
Query: 265 gcaacatgaagccctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 9156540 gtaacatgaagccatggcttgacatagctatgaaccagtt 9156579
Score = 54.0 bits (27), Expect = 4e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 97 agaatgagaacaggacattatggaagctagg 127
||||||||||||||||| |||||||||||||
Sbjct: 22636212 agaatgagaacaggacactatggaagctagg 22636242
>gb|AV810826.1|AV810826 AV810826 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-65-I04 3',
mRNA sequence
Length = 424
Score = 89.7 bits (45), Expect = 6e-016
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| || ||||| ||||| |||||||| ||||| || || ||||||||
Sbjct: 421 tactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgggttacaatccg 362
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||| ||||| | || ||||| || || || |||||||| |||||||||
Sbjct: 361 agcattagcatggatgagatccgcaacgctgcagtggtacacttcaacggtaacatgaag 302
Query: 276 ccctggctggacatcggtatgaaccagtt 304
|| ||||| ||||| | ||||||||||||
Sbjct: 301 ccatggcttgacatagctatgaaccagtt 273
>gb|BP608491.1|BP608491 BP608491 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-78-M23 3',
mRNA sequence
Length = 392
Score = 87.7 bits (44), Expect = 3e-015
Identities = 116/140 (82%)
Strand = Plus / Minus
Query: 165 acaaaacctctggagaaatcttggcatgttcttggacttggatacaatcctagcatcagc 224
||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| |||
Sbjct: 390 acaaagccgctggacaaatcatggcatgtgcttgggctgggttacaatccgagcattagc 331
Query: 225 atggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaagccctggctg 284
||||| ||||| | || ||||| || || || |||||||| ||||||||||| |||||
Sbjct: 330 atggatgagatccgcaacgctgcagtggtacacttcaacggtaacatgaagccatggctt 271
Query: 285 gacatcggtatgaaccagtt 304
||||| | ||||||||||||
Sbjct: 270 gacatagctatgaaccagtt 251
>gb|AV558460.1|AV558460 AV558460 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ099d11F 3', mRNA sequence
Length = 397
Score = 85.7 bits (43), Expect = 1e-014
Identities = 109/131 (83%)
Strand = Plus / Minus
Query: 174 ctggagaaatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggag 233
||||| ||||| |||||||| ||||| || || |||||||| ||||| |||||||| |||
Sbjct: 393 ctggacaaatcatggcatgtgcttgggctgggttacaatccgagcattagcatggatgag 334
Query: 234 attagaaatgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggt 293
|| | || ||||| || || || |||||||| ||||||||||| ||||| ||||| | |
Sbjct: 333 atccgcaacgctgcagtggtacacttcaacggtaacatgaagccatggcttgacatagct 274
Query: 294 atgaaccagtt 304
|||||||||||
Sbjct: 273 atgaaccagtt 263
>gb|BP565338.1|BP565338 BP565338 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-49-G21 3',
mRNA sequence
Length = 436
Score = 81.8 bits (41), Expect = 2e-013
Identities = 132/161 (81%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 313 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 254
Query: 205 gatacaatcctagcatcag-catggaggagattagaaatgctgctgttgtgcatttcaac 263
| |||||||| ||||| || |||||| ||||| | || ||||| || || || ||||||
Sbjct: 253 gttacaatccgagcattaggcatggatgagatccgcaacgctgcagtggtacacttcaac 194
Query: 264 ggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 193 ggtaacatgaagccatggcttgacatagctatgaaccagtt 153
>gb|BP582600.1|BP582600 BP582600 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-36-O09 3',
mRNA sequence
Length = 456
Score = 81.8 bits (41), Expect = 2e-013
Identities = 104/125 (83%)
Strand = Plus / Minus
Query: 180 aaatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattaga 239
||||| |||||||| ||||| || || |||||||| ||||| |||||||| ||||| |
Sbjct: 397 aaatcatggcatgtgcttgggctgggttacaatccgagcattagcatggatgagatccgc 338
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaac 299
|| ||||| || || || |||||||| ||||||||||| ||||| ||||| | |||||||
Sbjct: 337 aacgctgcagtggtacacttcaacggtaacatgaagccatggcttgacatagctatgaac 278
Query: 300 cagtt 304
|||||
Sbjct: 277 cagtt 273
>gb|BP608701.1|BP608701 BP608701 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-79-I12 3',
mRNA sequence
Length = 448
Score = 81.8 bits (41), Expect = 2e-013
Identities = 132/161 (81%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 415 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 356
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 355 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 296
Query: 265 gcaacatgaagcc-ctggctggacatcggtatgaaccagtt 304
| ||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 295 gtaacatgaagccagtggcttgacatagctatgaaccagtt 255
>gb|BP618000.1|BP618000 BP618000 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-H01 3',
mRNA sequence
Length = 419
Score = 73.8 bits (37), Expect = 4e-011
Identities = 116/141 (82%), Gaps = 1/141 (0%)
Strand = Plus / Minus
Query: 165 acaaaacctctggagaaatcttggcatgttcttgga-cttggatacaatcctagcatcag 223
||||| || ||||| ||||| |||||||| ||||| || || |||||||| ||||| ||
Sbjct: 413 acaaagccgctggacaaatcatggcatgtgcttggggctgggttacaatccgagcattag 354
Query: 224 catggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaagccctggct 283
|||||| ||||| | || ||||| || || || |||||||| ||||||||||| |||||
Sbjct: 353 catggatgagatccgcaacgctgcagtggtacacttcaacggtaacatgaagccatggct 294
Query: 284 ggacatcggtatgaaccagtt 304
||||| | ||||||||||||
Sbjct: 293 tgacatagctatgaaccagtt 273
>gb|BP621490.1|BP621490 BP621490 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-41-L15 3',
mRNA sequence
Length = 422
Score = 73.8 bits (37), Expect = 4e-011
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct: 413 tgatcaccttttactcaaccacaaagccgctggacaaatcatggcatgtgcttgggctgg 354
Query: 205 gatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacg 264
| |||||||| ||||| |||||||| ||||| | || ||||| || || || |||||||
Sbjct: 353 gttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacg 294
Query: 265 gcaacatgaagcc 277
| |||||||||||
Sbjct: 293 gtaacatgaagcc 281
>gb|BP649569.1|BP649569 BP649569 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-14-B12 3',
mRNA sequence
Length = 411
Score = 69.9 bits (35), Expect = 6e-010
Identities = 129/159 (81%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 146 gatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttgg 205
|||||| || ||||| || ||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 411 gatcaccttttactcaaccacaaagccgctggacaaatcatgccatgtgcttgggctggg 352
Query: 206 atacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacgg 265
|||||||| ||||| |||||||| ||||| | || ||||| || || || ||||||||
Sbjct: 351 ttacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacgg 292
Query: 266 caacatgaagccctggctggacatcggtatgaaccagtt 304
||||| ||||| ||||| ||||| | ||||||||||||
Sbjct: 291 taacat-aagccatggcttgacatagctatgaaccagtt 254
>gb|BH757657.1|BH757657 SALK_004353.54.95.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_004353.54.95.x,
DNA sequence
Length = 412
Score = 67.9 bits (34), Expect = 2e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 207 tacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggc 266
|||||||| ||||| |||||||| ||||| | || ||||| || || || ||||||||
Sbjct: 20 tacaatccgagcattagcatggatgagatccgcaacgctgcagtggtacacttcaacggt 79
Query: 267 aacatgaagccctggctggacatcggtatgaaccagtt 304
||||||||||| ||||| ||||| | ||||||||||||
Sbjct: 80 aacatgaagccatggcttgacatagctatgaaccagtt 117
>gb|BP645877.1|BP645877 BP645877 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-70-D20 3',
mRNA sequence
Length = 410
Score = 61.9 bits (31), Expect = 1e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 174 ctggagaaatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggag 233
||||| ||||| || ||||| ||||| || || |||||||| | ||| |||||||| |||
Sbjct: 407 ctggacaaatcatgccatgtgcttgggctgggttacaatccgaccattagcatggatgag 348
Query: 234 attagaaatgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggt 293
|| | || ||| | || || || |||||||| ||||||||||| ||||| ||||| | |
Sbjct: 347 atccgcaacgctccagtggtacacttcaacggtaacatgaagccatggcttgacatagct 288
Query: 294 atgaaccagtt 304
|||||||||||
Sbjct: 287 atgaaccagtt 277
>gb|BP602921.1|BP602921 BP602921 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-56-I24 3',
mRNA sequence
Length = 368
Score = 60.0 bits (30), Expect = 6e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 195 cttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtg 254
||||| ||||| |||||||| ||||| |||||||| ||||| | || ||||| || ||
Sbjct: 364 cttgggcttggttacaatccgagcattagcatggatgagatccgcaacgctgcagtggta 305
Query: 255 catttcaacggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| |||||||| |||||||| || ||||| |||| | ||||||||||||
Sbjct: 304 cacttcaacggtaacatgaacccatggctttacatagctatgaaccagtt 255
>gb|BP638267.1|BP638267 BP638267 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-08-O22 3',
mRNA sequence
Length = 368
Score = 56.0 bits (28), Expect = 9e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 189 catgttcttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgct 248
||||| ||||| || || |||||||| ||||| |||||||| ||||| | || ||| |
Sbjct: 368 catgtgcttgggctgggttacaatccgagcattagcatggatgagatccgcaacgctcca 309
Query: 249 gttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaaccagtt 304
|| || || |||||||| |||||||| || ||||| ||||| | ||||||||||||
Sbjct: 308 gtggtacacttcaacggtaacatgaacccatggcttgacatagctatgaaccagtt 253
>emb|AJ243015.1|ATH243015 Arabidopsis thaliana LGT1 gene, and partial FUSCA6 gene
Length = 5000
Score = 54.0 bits (27), Expect = 4e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 97 agaatgagaacaggacattatggaagctagg 127
||||||||||||||||| |||||||||||||
Sbjct: 3467 agaatgagaacaggacactatggaagctagg 3497
>emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome 3, BAC clone T20K12
Length = 109155
Score = 54.0 bits (27), Expect = 4e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 97 agaatgagaacaggacattatggaagctagg 127
||||||||||||||||| |||||||||||||
Sbjct: 13372 agaatgagaacaggacactatggaagctagg 13402
>gb|AV548282.1|AV548282 AV548282 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL50h12F 3', mRNA sequence
Length = 546
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 98 gaatgagaacaggacattatggaagctagg 127
|||||||||||||||| |||||||||||||
Sbjct: 474 gaatgagaacaggacactatggaagctagg 445
>gb|AV563687.1|AV563687 AV563687 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191e10F 3', mRNA sequence
Length = 560
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 98 gaatgagaacaggacattatggaagctagg 127
|||||||||||||||| |||||||||||||
Sbjct: 494 gaatgagaacaggacactatggaagctagg 465
>gb|AV565879.1|AV565879 AV565879 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ232d06F 3', mRNA sequence
Length = 434
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 98 gaatgagaacaggacattatggaagctagg 127
|||||||||||||||| |||||||||||||
Sbjct: 427 gaatgagaacaggacactatggaagctagg 398
>gb|AY039515.1| Arabidopsis thaliana AT3g61130/T20K12_30 mRNA, complete cds
Length = 2542
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 98 gaatgagaacaggacattatggaagctagg 127
|||||||||||||||| |||||||||||||
Sbjct: 2068 gaatgagaacaggacactatggaagctagg 2097
>gb|BT000630.1| Arabidopsis thaliana unknown protein (At3g61130/T20K12_30) mRNA,
complete cds
Length = 1920
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 98 gaatgagaacaggacattatggaagctagg 127
|||||||||||||||| |||||||||||||
Sbjct: 1746 gaatgagaacaggacactatggaagctagg 1775
>emb|BX824243.1|CNS0A7GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH32ZE03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2452
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 98 gaatgagaacaggacattatggaagctagg 127
|||||||||||||||| |||||||||||||
Sbjct: 2019 gaatgagaacaggacactatggaagctagg 2048
>ref|NM_115977.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT3G61130 mRNA, complete cds
Length = 2546
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 98 gaatgagaacaggacattatggaagctagg 127
|||||||||||||||| |||||||||||||
Sbjct: 2068 gaatgagaacaggacactatggaagctagg 2097
>emb|BX293081.1| Arabidopsis thaliana T-DNA flanking sequence GK-470H07-019028,
genomic survey sequence
Length = 417
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 97 agaatgagaacaggacattatggaagcta 125
||||||||||||||||| |||||||||||
Sbjct: 389 agaatgagaacaggacactatggaagcta 417
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 371,674
Number of Sequences: 1013581
Number of extensions: 371674
Number of successful extensions: 26824
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26214
Number of HSP's gapped (non-prelim): 610
length of query: 746
length of database: 908,940,872
effective HSP length: 20
effective length of query: 726
effective length of database: 888,669,252
effective search space: 645173876952
effective search space used: 645173876952
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)