BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H36048.1|H36048 14570 Lambda-PRL2 Arabidopsis thaliana c... 52 1e-004
gb|AI993841.1|AI993841 701515138 A. thaliana, Ohio State cl... 52 1e-004
gb|AV822400.1|AV822400 AV822400 RAFL5 Arabidopsis thaliana ... 52 1e-004
gb|BX837049.1|BX837049 BX837049 Arabidopsis thaliana Adult ... 52 1e-004
gb|BP796288.1|BP796288 BP796288 RAFL5 Arabidopsis thaliana ... 52 1e-004
gb|BP798186.1|BP798186 BP798186 RAFL14 Arabidopsis thaliana... 52 1e-004
gb|BP807816.1|BP807816 BP807816 RAFL16 Arabidopsis thaliana... 52 1e-004
gb|BP830950.1|BP830950 BP830950 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|BP842185.1|BP842185 BP842185 RAFL21 Arabidopsis thaliana... 52 1e-004
gb|BP861116.1|BP861116 BP861116 RAFL21 Arabidopsis thaliana... 52 1e-004
gb|DN604694.1|DN604694 JCAt2g23320 Arabidopsis Gateway cDNA... 52 1e-004
gb|DR751347.1|DR751347 10-L022529-065-010-B02-SeLA MPIZ-ADI... 52 1e-004
gb|AF224704.1|AF224704 Arabidopsis thaliana WRKY DNA-bindin... 52 1e-004
gb|AF370194.1| Arabidopsis thaliana putative WRKY-type DNA-... 52 1e-004
gb|AY062950.1| Arabidopsis thaliana putative WRKY-type DNA-... 52 1e-004
emb|AX651808.1| Sequence 664 from Patent WO03000898 52 1e-004
gb|AC002391.3| Arabidopsis thaliana chromosome 2 clone T20D... 52 1e-004
emb|BX821739.1|CNS0A891 Arabidopsis thaliana Full-length cD... 52 1e-004
emb|BX819911.1|CNS0A8G8 Arabidopsis thaliana Full-length cD... 52 1e-004
emb|BX820016.1|CNS0A8IQ Arabidopsis thaliana Full-length cD... 52 1e-004
emb|BX820678.1|CNS0A8NU Arabidopsis thaliana Full-length cD... 52 1e-004
emb|BX819549.1|CNS0A8W1 Arabidopsis thaliana Full-length cD... 52 1e-004
emb|CS137504.1| Sequence 475 from Patent WO2005047516 52 1e-004
ref|NM_127896.2| Arabidopsis thaliana WRKY15; transcription... 52 1e-004
ref|NM_201792.1| Arabidopsis thaliana WRKY15; transcription... 52 1e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 52 1e-004
gb|BP861343.1|BP861343 BP861343 RAFL21 Arabidopsis thaliana... 48 0.002
gb|T04430.1|T04430 477 Lambda-PRL2 Arabidopsis thaliana cDN... 46 0.008
gb|Z26003.1|Z26003 ATTS1280 Grenoble-B Arabidopsis thaliana... 44 0.030
gb|AA040971.1|AA040971 24237 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA040973.1|AA040973 24239 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA040978.1|AA040978 24244 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA041012.1|AA041012 24278 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA041107.1|AA041107 24373 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA041125.1|AA041125 24391 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA042208.1|AA042208 24529 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA042739.1|AA042739 24995 CD4-13 Arabidopsis thaliana cD... 44 0.030
gb|AA712285.1|AA712285 32013 Lambda-PRL2 Arabidopsis thalia... 44 0.030
gb|AA728614.1|AA728614 33208 Lambda-PRL2 Arabidopsis thalia... 44 0.030
gb|AI996588.1|AI996588 701667558 A. thaliana, Columbia Col-... 44 0.030
gb|BE844780.1|BE844780 AD02B10T7 AD A. thaliana (Col-0 gl1)... 44 0.030
gb|AV789164.1|AV789164 AV789164 RAFL6 Arabidopsis thaliana ... 44 0.030
gb|AV799000.1|AV799000 AV799000 RAFL9 Arabidopsis thaliana ... 44 0.030
gb|AV803339.1|AV803339 AV803339 RAFL9 Arabidopsis thaliana ... 44 0.030
gb|AV827687.1|AV827687 AV827687 RAFL9 Arabidopsis thaliana ... 44 0.030
gb|AV828914.1|AV828914 AV828914 RAFL9 Arabidopsis thaliana ... 44 0.030
gb|AV442136.1|AV442136 AV442136 Arabidopsis thaliana above-... 44 0.030
gb|AV533248.1|AV533248 AV533248 Arabidopsis thaliana flower... 44 0.030
gb|AV537779.1|AV537779 AV537779 Arabidopsis thaliana roots ... 44 0.030
gb|CK119066.1|CK119066 214j04.p1 AtM1 Arabidopsis thaliana ... 44 0.030
gb|BP611942.1|BP611942 BP611942 RAFL16 Arabidopsis thaliana... 44 0.030
gb|CB252164.1|CB252164 33-E012999-019-004-B09-T7R MPIZ-ADIS... 44 0.030
gb|CB252166.1|CB252166 33-E012994-019-004-B09-SP6r MPIZ-ADI... 44 0.030
gb|CB253683.1|CB253683 91-E010742-019-001-F24-T7R MPIZ-ADIS... 44 0.030
gb|CB254270.1|CB254270 75-E010932-019-003-E20-T7R MPIZ-ADIS... 44 0.030
gb|CB254813.1|CB254813 59-E010740-019-001-E20-T7R MPIZ-ADIS... 44 0.030
gb|CB254814.1|CB254814 59-E010741-019-001-F08-T7R MPIZ-ADIS... 44 0.030
gb|BP803621.1|BP803621 BP803621 RAFL14 Arabidopsis thaliana... 44 0.030
gb|BP835858.1|BP835858 BP835858 RAFL19 Arabidopsis thaliana... 44 0.030
gb|BP843677.1|BP843677 BP843677 RAFL21 Arabidopsis thaliana... 44 0.030
gb|U15683.1|ATU15683 Arabidopsis thaliana gibberellin-regul... 44 0.030
emb|X98255.1|ATGASA4 A.thaliana GASA4 gene 44 0.030
gb|AY057601.1| Arabidopsis thaliana AT5g15230/F8M21_120 mRN... 44 0.030
emb|AX364097.1| Sequence 104 from Patent WO0208410 44 0.030
emb|AX366182.1| Sequence 101 from Patent WO0208411 44 0.030
gb|AF360199.1| Arabidopsis thaliana putative GASA4 protein ... 44 0.030
gb|AY040048.1| Arabidopsis thaliana putative GASA4 protein ... 44 0.030
gb|AY144104.1| Arabidopsis thaliana hypothetical protein (A... 44 0.030
emb|BX831643.1|CNS09ZMA Arabidopsis thaliana Full-length cD... 44 0.030
emb|BX831662.1|CNS09ZRW Arabidopsis thaliana Full-length cD... 44 0.030
emb|BX832325.1|CNS09ZTP Arabidopsis thaliana Full-length cD... 44 0.030
emb|BX819412.1|CNS0A9ZE Arabidopsis thaliana Full-length cD... 44 0.030
emb|CQ768528.1| Sequence 23 from Patent WO2004007712 44 0.030
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.030
gb|AY649296.1| Arabidopsis thaliana hypothetical protein (A... 44 0.030
emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome ... 44 0.030
ref|NM_121527.2| Arabidopsis thaliana GASA4 AT5G15230 (GASA... 44 0.030
ref|NM_128070.3| Arabidopsis thaliana unknown protein AT2G2... 44 0.030
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.030
gb|BP599522.1|BP599522 BP599522 RAFL16 Arabidopsis thaliana... 42 0.12
dbj|AB005242.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.12
ref|NM_121647.1| Arabidopsis thaliana unknown protein AT5G1... 42 0.12
emb|AL087795.1|CNS00S0L Arabidopsis thaliana genome survey ... 40 0.47
gb|R90298.1|R90298 16653 Lambda-PRL2 Arabidopsis thaliana c... 40 0.47
gb|BP800954.1|BP800954 BP800954 RAFL14 Arabidopsis thaliana... 40 0.47
dbj|AP000388.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.47
gb|AY507961.1| Arabidopsis thaliana PHO1-like protein (PHO1... 40 0.47
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.47
ref|NM_113828.2| Arabidopsis thaliana unknown protein AT3G2... 40 0.47
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.47
>gb|H36048.1|H36048 14570 Lambda-PRL2 Arabidopsis thaliana cDNA clone 172O13T7, mRNA
sequence
Length = 453
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 101 gcggcggcggaggcggaggcggaggc 76
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 96 ggcggaggcggaggcggaggcgga 73
>gb|AI993841.1|AI993841 701515138 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701515138, mRNA sequence
Length = 582
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 94 gcggcggcggaggcggaggcggaggc 69
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| |||||||||||||||||||||
Sbjct: 89 ggcggaggcggaggcggaggcggaggc 63
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| |||||||||||||||||||||
Sbjct: 83 ggcggaggcggaggcggaggcggaggc 57
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| |||||||||||||||||||||
Sbjct: 77 ggcggaggcggaggcggaggcggaggc 51
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 71 ggcggaggcggaggcggaggcgga 48
>gb|AV822400.1|AV822400 AV822400 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-A18 5',
mRNA sequence
Length = 667
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 251 gcggcggcggaggcggaggcggaggc 226
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 246 ggcggaggcggaggcggaggcgga 223
>gb|BX837049.1|BX837049 BX837049 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS82ZA09 5PRIM, mRNA
sequence
Length = 589
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 235 gcggcggcggaggcggaggcggaggc 210
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 230 ggcggaggcggaggcggaggcgga 207
>gb|BP796288.1|BP796288 BP796288 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-01-D16 5',
mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 219 gcggcggcggaggcggaggcggaggc 194
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 214 ggcggaggcggaggcggaggcgga 191
>gb|BP798186.1|BP798186 BP798186 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-06-F04 5',
mRNA sequence
Length = 386
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 91 gcggcggcggaggcggaggcggaggc 66
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 86 ggcggaggcggaggcggaggcgga 63
>gb|BP807816.1|BP807816 BP807816 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-15-F14 5',
mRNA sequence
Length = 411
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 51 gcggcggcggaggcggaggcggaggc 26
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 46 ggcggaggcggaggcggaggcgga 23
>gb|BP830950.1|BP830950 BP830950 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-87-F15 5',
mRNA sequence
Length = 399
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 258 gcggcggcggaggcggaggcggaggc 233
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 253 ggcggaggcggaggcggaggcgga 230
>gb|BP842185.1|BP842185 BP842185 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-53-N22 5',
mRNA sequence
Length = 378
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 253 gcggcggcggaggcggaggcggaggc 228
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 248 ggcggaggcggaggcggaggcgga 225
>gb|BP861116.1|BP861116 BP861116 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-H12 5',
mRNA sequence
Length = 367
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 254 gcggcggcggaggcggaggcggaggc 229
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 249 ggcggaggcggaggcggaggcgga 226
>gb|DN604694.1|DN604694 JCAt2g23320 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 415
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 180 gcggcggcggaggcggaggcggaggc 155
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 175 ggcggaggcggaggcggaggcgga 152
>gb|DR751347.1|DR751347 10-L022529-065-010-B02-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 010-B02, mRNA sequence
Length = 317
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 245 gcggcggcggaggcggaggcggaggc 220
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 240 ggcggaggcggaggcggaggcgga 217
>gb|AF224704.1|AF224704 Arabidopsis thaliana WRKY DNA-binding protein 15 (WRKY15) mRNA,
complete cds
Length = 1198
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 227 gcggcggcggaggcggaggcggaggc 202
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 222 ggcggaggcggaggcggaggcgga 199
>gb|AF370194.1| Arabidopsis thaliana putative WRKY-type DNA-binding protein
(At2g23320) mRNA, complete cds
Length = 1153
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 250 gcggcggcggaggcggaggcggaggc 225
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 245 ggcggaggcggaggcggaggcgga 222
>gb|AY062950.1| Arabidopsis thaliana putative WRKY-type DNA-binding protein
(At2g23320) mRNA, complete cds
Length = 985
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 185 gcggcggcggaggcggaggcggaggc 160
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 180 ggcggaggcggaggcggaggcgga 157
>emb|AX651808.1| Sequence 664 from Patent WO03000898
Length = 954
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 185 gcggcggcggaggcggaggcggaggc 160
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 180 ggcggaggcggaggcggaggcgga 157
>gb|AC002391.3| Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete
sequence
Length = 108881
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 26255 gcggcggcggaggcggaggcggaggc 26280
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 26260 ggcggaggcggaggcggaggcgga 26283
>emb|BX821739.1|CNS0A891 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL6ZF09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1073
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 233 gcggcggcggaggcggaggcggaggc 208
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 228 ggcggaggcggaggcggaggcgga 205
>emb|BX819911.1|CNS0A8G8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS47ZC04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1076
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 240 gcggcggcggaggcggaggcggaggc 215
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 235 ggcggaggcggaggcggaggcgga 212
>emb|BX820016.1|CNS0A8IQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS60ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1156
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 232 gcggcggcggaggcggaggcggaggc 207
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 227 ggcggaggcggaggcggaggcgga 204
>emb|BX820678.1|CNS0A8NU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH59ZD04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1057
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 212 gcggcggcggaggcggaggcggaggc 187
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 207 ggcggaggcggaggcggaggcgga 184
>emb|BX819549.1|CNS0A8W1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB89ZF09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1067
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 235 gcggcggcggaggcggaggcggaggc 210
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 230 ggcggaggcggaggcggaggcgga 207
>emb|CS137504.1| Sequence 475 from Patent WO2005047516
Length = 1115
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 218 gcggcggcggaggcggaggcggaggc 193
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 213 ggcggaggcggaggcggaggcgga 190
>ref|NM_127896.2| Arabidopsis thaliana WRKY15; transcription factor AT2G23320
(WRKY15) transcript variant AT2G23320.1 mRNA, complete
cds
Length = 1237
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 250 gcggcggcggaggcggaggcggaggc 225
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 245 ggcggaggcggaggcggaggcgga 222
>ref|NM_201792.1| Arabidopsis thaliana WRKY15; transcription factor AT2G23320
(WRKY15) transcript variant AT2G23320.2 mRNA, complete
cds
Length = 1235
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 250 gcggcggcggaggcggaggcggaggc 225
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 245 ggcggaggcggaggcggaggcgga 222
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||||
Sbjct: 9932262 gcggcggcggaggcggaggcggaggc 9932237
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
|||| |||||||||||||||||||||
Sbjct: 10703699 gcggaggcggaggcggaggcggaggc 10703674
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 9932257 ggcggaggcggaggcggaggcgga 9932234
>gb|BP861343.1|BP861343 BP861343 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-47-E24 5',
mRNA sequence
Length = 391
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 194 ggcggcggaggcggaggcggaggc 217
||||||||||||||||||||||||
Sbjct: 193 ggcggcggaggcggaggcggaggc 170
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 190 ggcggaggcggaggcggaggcgga 167
>gb|T04430.1|T04430 477 Lambda-PRL2 Arabidopsis thaliana cDNA clone 40F4T7, mRNA
sequence
Length = 400
Score = 46.1 bits (23), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
|||||||||||| |||||||||||||
Sbjct: 94 gcggcggcggagncggaggcggaggc 69
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| |||||||||||||||||||||
Sbjct: 77 ggcggaggcggaggcggaggcggaggc 51
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 71 ggcggaggcggaggcggaggcgga 48
>gb|Z26003.1|Z26003 ATTS1280 Grenoble-B Arabidopsis thaliana cDNA clone GBGe117a, mRNA
sequence
Length = 331
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 136 cctgctacaacaactggaaaac 157
>gb|AA040971.1|AA040971 24237 CD4-13 Arabidopsis thaliana cDNA clone E10D8T7, mRNA sequence
Length = 588
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 190 cctgctacaacaactggaaaac 169
>gb|AA040973.1|AA040973 24239 CD4-13 Arabidopsis thaliana cDNA clone E10E11T7, mRNA
sequence
Length = 572
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 199 cctgctacaacaactggaaaac 178
>gb|AA040978.1|AA040978 24244 CD4-13 Arabidopsis thaliana cDNA clone E10E4T7, mRNA sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 190 cctgctacaacaactggaaaac 169
>gb|AA041012.1|AA041012 24278 CD4-13 Arabidopsis thaliana cDNA clone E10H8T7, mRNA sequence
Length = 507
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 199 cctgctacaacaactggaaaac 178
>gb|AA041107.1|AA041107 24373 CD4-13 Arabidopsis thaliana cDNA clone E1G11T7, mRNA sequence
Length = 687
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 344 cctgctacaacaactggaaaac 365
>gb|AA041125.1|AA041125 24391 CD4-13 Arabidopsis thaliana cDNA clone E1H9T7, mRNA sequence
Length = 644
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 358 cctgctacaacaactggaaaac 379
>gb|AA042208.1|AA042208 24529 CD4-13 Arabidopsis thaliana cDNA clone E4D10T7, mRNA sequence
Length = 587
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 199 cctgctacaacaactggaaaac 178
>gb|AA042739.1|AA042739 24995 CD4-13 Arabidopsis thaliana cDNA clone E8D10T7, mRNA sequence
Length = 636
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 345 cctgctacaacaactggaaaac 366
>gb|AA712285.1|AA712285 32013 Lambda-PRL2 Arabidopsis thaliana cDNA clone 186K14T7, mRNA
sequence
Length = 491
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 270 cctgctacaacaactggaaaac 291
>gb|AA728614.1|AA728614 33208 Lambda-PRL2 Arabidopsis thaliana cDNA clone 131I7T7, mRNA
sequence
Length = 466
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 274 cctgctacaacaactggaaaac 295
>gb|AI996588.1|AI996588 701667558 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701667558, mRNA sequence
Length = 538
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 209 cctgctacaacaactggaaaac 188
>gb|BE844780.1|BE844780 AD02B10T7 AD A. thaliana (Col-0 gl1) library enriched for
salt-induced transcripts; 10-14 day seedlings; 4h 160mM
NaCl stress Arabidopsis thaliana cDNA clone AD02B10
similar to S60232 gibberellin-regulated protein GASA4
precursor, mRNA sequence
Length = 283
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 209 cctgctacaacaactggaaaac 188
>gb|AV789164.1|AV789164 AV789164 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-82-H18 3',
mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 226 cctgctacaacaactggaaaac 205
>gb|AV799000.1|AV799000 AV799000 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-18-F02 3',
mRNA sequence
Length = 410
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 242 cctgctacaacaactggaaaac 221
>gb|AV803339.1|AV803339 AV803339 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-35-D01 3',
mRNA sequence
Length = 383
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 243 cctgctacaacaactggaaaac 222
>gb|AV827687.1|AV827687 AV827687 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-18-F02 5',
mRNA sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 387 cctgctacaacaactggaaaac 408
>gb|AV828914.1|AV828914 AV828914 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-35-D01 5',
mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 387 cctgctacaacaactggaaaac 408
>gb|AV442136.1|AV442136 AV442136 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ23c03_r 5', mRNA
sequence
Length = 300
Score = 44.1 bits (22), Expect = 0.030
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 192 gcggcggcggaggcggaggcggaggc 217
|||||||||||||||||| |||||||
Sbjct: 216 gcggcggcggaggcggagtcggaggc 191
>gb|AV533248.1|AV533248 AV533248 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB058e03F 3', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 226 cctgctacaacaactggaaaac 205
>gb|AV537779.1|AV537779 AV537779 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ103c11F 3', mRNA sequence
Length = 372
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 229 cctgctacaacaactggaaaac 208
>gb|CK119066.1|CK119066 214j04.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011J04214
5-PRIME, mRNA sequence
Length = 594
Score = 44.1 bits (22), Expect = 0.030
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 390 cctgctacaacaactggaaaac 411
||||||||||||||||||||||
Sbjct: 187 cctgctacaacaactggaaaac 208
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 193,334
Number of Sequences: 1013581
Number of extensions: 193334
Number of successful extensions: 15150
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14378
Number of HSP's gapped (non-prelim): 695
length of query: 654
length of database: 908,940,872
effective HSP length: 20
effective length of query: 634
effective length of database: 888,669,252
effective search space: 563416305768
effective search space used: 563416305768
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)