BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana c... 60 6e-007
gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flower... 60 6e-007
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 60 6e-007
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 60 6e-007
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 60 6e-007
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 60 6e-007
dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alph... 60 6e-007
dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alph... 60 6e-007
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 60 6e-007
gb|BP837657.1|BP837657 BP837657 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 44 0.036
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.036
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.036
gb|AV557271.1|AV557271 AV557271 Arabidopsis thaliana green ... 42 0.14
gb|AY063925.1| Arabidopsis thaliana putative arabinosidase ... 42 0.14
gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown pr... 42 0.14
gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 42 0.14
ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on ... 42 0.14
>gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182B24T7, mRNA
sequence
Length = 481
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 102 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 43
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 42 aatgagaaacgcagcttc 25
>gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 3PRIM, mRNA sequence
Length = 1096
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 615 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 674
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 675 aatgagaaacgcagcttc 692
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 1601 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 1542
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 1541 aatgagaaacgcagcttc 1524
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 1527 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 1468
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 1467 aatgagaaacgcagcttc 1450
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 1735 gttcacaaagagtggagcataacttgccatgtcaacaatgtcactattcttttcaagacc 1676
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 1675 aatgagaaacgcagcttc 1658
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 1776 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 1717
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 1716 aatgagaaacgcagcttc 1699
>dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL22-21-H07
Length = 993
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 334 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 275
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 274 aatgagaaacgcagcttc 257
>dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL24-02-J05
Length = 1328
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 669 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 610
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 609 aatgagaaacgcagcttc 592
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 60.0 bits (30), Expect = 6e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 1774 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 1715
Query: 710 agtgaggaaagcagcttc 727
| |||| || ||||||||
Sbjct: 1714 aatgagaaacgcagcttc 1697
>gb|BP837657.1|BP837657 BP837657 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-21-H07 5',
mRNA sequence
Length = 379
Score = 52.0 bits (26), Expect = 1e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactgttcttctccagacc 709
|||||| |||||||| || ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct: 332 gttcacaaagagtggagcataacttgccatttcaacaatgtcactattcttttcaagacc 273
Query: 710 agtgag 715
| ||||
Sbjct: 272 aatgag 267
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactg 695
|||||| |||||||| || ||||||||||| | |||||| ||||||
Sbjct: 54630 gttcacaaagagtggagcataacttgccatttcaacaatgtcactg 54585
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactg 695
|||||| |||||||| || ||||||||||| | |||||| ||||||
Sbjct: 3386637 gttcacaaagagtggagcataacttgccatttcaacaatgtcactg 3386592
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 650 gttcacgaagagtggtgcgtaacttgccatctgaacaatatcactg 695
|||||| |||||||| || ||||||||||| | |||||| ||||||
Sbjct: 3361783 gttcacaaagagtggagcataacttgccatttcaacaatgtcactg 3361828
>gb|AV557271.1|AV557271 AV557271 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ064d12F 3', mRNA sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.14
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 684 acaatatcactgttcttctccagaccagtgaggaaagcagcttca 728
||||| ||||||||||| |||| |||| ||||||||| ||||||
Sbjct: 359 acaatgtcactgttcttttccaaaccaaggaggaaagctgcttca 315
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA,
complete cds
Length = 2219
Score = 42.1 bits (21), Expect = 0.14
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 684 acaatatcactgttcttctccagaccagtgaggaaagcagcttca 728
||||| ||||||||||| |||| |||| ||||||||| ||||||
Sbjct: 1565 acaatgtcactgttcttttccaaaccaaggaggaaagctgcttca 1521
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA,
complete cds
Length = 2055
Score = 42.1 bits (21), Expect = 0.14
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 684 acaatatcactgttcttctccagaccagtgaggaaagcagcttca 728
||||| ||||||||||| |||| |||| ||||||||| ||||||
Sbjct: 1490 acaatgtcactgttcttttccaaaccaaggaggaaagctgcttca 1446
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA,
complete cds
Length = 2043
Score = 42.1 bits (21), Expect = 0.14
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 684 acaatatcactgttcttctccagaccagtgaggaaagcagcttca 728
||||| ||||||||||| |||| |||| ||||||||| ||||||
Sbjct: 1495 acaatgtcactgttcttttccaaaccaaggaggaaagctgcttca 1451
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120
mRNA, complete cds
Length = 2208
Score = 42.1 bits (21), Expect = 0.14
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 684 acaatatcactgttcttctccagaccagtgaggaaagcagcttca 728
||||| ||||||||||| |||| |||| ||||||||| ||||||
Sbjct: 1565 acaatgtcactgttcttttccaaaccaaggaggaaagctgcttca 1521
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 302,443
Number of Sequences: 1013581
Number of extensions: 302443
Number of successful extensions: 18720
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18462
Number of HSP's gapped (non-prelim): 258
length of query: 780
length of database: 908,940,872
effective HSP length: 20
effective length of query: 760
effective length of database: 888,669,252
effective search space: 675388631520
effective search space used: 675388631520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)