BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161272.2.22
         (333 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV813668.1|AV813668  AV813668 RAFL9 Arabidopsis thaliana ...    38   0.91 
gb|AE005172.1|  Arabidopsis thaliana chromosome 1, top arm c...    36   3.6  
gb|AC007797.7|AC007797  Arabidopsis thaliana chromosome I BA...    36   3.6  
ref|NM_101848.1|  Arabidopsis thaliana unknown protein AT1G1...    36   3.6  
ref|NC_003070.5|  Arabidopsis thaliana chromosome 1, complet...    36   3.6  

>gb|AV813668.1|AV813668 AV813668 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-79-H16 3',
           mRNA sequence
          Length = 400

 Score = 38.2 bits (19), Expect = 0.91
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 32  tggtctctgctggacaactttgaatgg 58
           |||||| || |||||||||||||||||
Sbjct: 347 tggtctttgatggacaactttgaatgg 321



>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
          Length = 14221815

 Score = 36.2 bits (18), Expect = 3.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 41      ctggacaactttgaatggtttg 62
               ||||| ||||||||||||||||
Sbjct: 6917683 ctggagaactttgaatggtttg 6917704



>gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete
            sequence
          Length = 119942

 Score = 36.2 bits (18), Expect = 3.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 41   ctggacaactttgaatggtttg 62
            ||||| ||||||||||||||||
Sbjct: 4848 ctggagaactttgaatggtttg 4827



>ref|NM_101848.1| Arabidopsis thaliana unknown protein AT1G19930 mRNA, complete cds
          Length = 1035

 Score = 36.2 bits (18), Expect = 3.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 41  ctggacaactttgaatggtttg 62
           ||||| ||||||||||||||||
Sbjct: 765 ctggagaactttgaatggtttg 786



>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
          Length = 30432563

 Score = 36.2 bits (18), Expect = 3.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 41      ctggacaactttgaatggtttg 62
               ||||| ||||||||||||||||
Sbjct: 6917859 ctggagaactttgaatggtttg 6917880



  Database: At_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:53 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,691
Number of Sequences: 1013581
Number of extensions: 91691
Number of successful extensions: 5266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5197
Number of HSP's gapped (non-prelim): 69
length of query: 333
length of database: 908,940,872
effective HSP length: 19
effective length of query: 314
effective length of database: 889,682,833
effective search space: 279360409562
effective search space used: 279360409562
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)