BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161254.2.1
(1192 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana ... 68 4e-009
gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flower... 68 4e-009
gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana... 68 4e-009
gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana... 68 4e-009
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 68 4e-009
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 68 4e-009
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 68 4e-009
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 68 4e-009
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 68 4e-009
gb|BP804915.1|BP804915 BP804915 RAFL16 Arabidopsis thaliana... 60 9e-007
gb|BP805706.1|BP805706 BP805706 RAFL16 Arabidopsis thaliana... 60 9e-007
gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24 52 2e-004
gb|AY063925.1| Arabidopsis thaliana putative arabinosidase ... 52 2e-004
gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown pr... 52 2e-004
gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 52 2e-004
ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on ... 52 2e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 52 2e-004
gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana ... 50 9e-004
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 48 0.004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 48 0.004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 48 0.004
gb|BE529110.1|BE529110 M73F10STM Arabidopsis developing see... 46 0.014
gb|BP833955.1|BP833955 BP833955 RAFL19 Arabidopsis thaliana... 44 0.055
gb|BP847175.1|BP847175 BP847175 RAFL21 Arabidopsis thaliana... 44 0.055
gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing see... 42 0.22
>gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-D11 5',
mRNA sequence
Length = 602
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 240 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 299
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 300 tgggccgaacttgttagcaacagagggtttgaagctgg 337
>gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 5PRIM, mRNA sequence
Length = 1098
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 225 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 284
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 285 tgggccgaacttgttagcaacagagggtttgaagctgg 322
>gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-D18 5',
mRNA sequence
Length = 401
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 238 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 297
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 298 tgggccgaacttgttagcaacagagggtttgaagctgg 335
>gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-J09 5',
mRNA sequence
Length = 393
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 239 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 298
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 299 tgggccgaacttgttagcaacagagggtttgaagctgg 336
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 240 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 299
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 300 tgggccgaacttgttagcaacagagggtttgaagctgg 337
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 876 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 935
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 936 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 995
Query: 1171 cttgg 1175
|||||
Sbjct: 996 cttgg 1000
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 166 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 225
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 226 tgggccgaacttgttagcaacagagggtttgaagctgg 263
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 802 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 861
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 862 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 921
Query: 1171 cttgg 1175
|||||
Sbjct: 922 cttgg 926
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 374 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 433
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 434 tgggccgaacttgttagcaacagagggtttgaagctgg 471
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 1010 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 1069
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 1070 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 1129
Query: 1171 cttgg 1175
|||||
Sbjct: 1130 cttgg 1134
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 417 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 476
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 477 tgggccgaacttgttagcaacagagggtttgaagctgg 514
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 1051 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 1110
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 1111 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 1170
Query: 1171 cttgg 1175
|||||
Sbjct: 1171 cttgg 1175
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 67.9 bits (34), Expect = 4e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 413 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 472
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || |||||||| || ||||||||
Sbjct: 473 tgggccgaacttgttagcaacagagggtttgaagctgg 510
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 1049 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 1108
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 1109 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 1168
Query: 1171 cttgg 1175
|||||
Sbjct: 1169 cttgg 1173
>gb|BP804915.1|BP804915 BP804915 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-03-M02 5',
mRNA sequence
Length = 376
Score = 60.0 bits (30), Expect = 9e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 290 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 349
Query: 487 tgggcagagcttgtcagtaacagagg 512
||||| || ||||| || ||||||||
Sbjct: 350 tgggccgaacttgttagcaacagagg 375
>gb|BP805706.1|BP805706 BP805706 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-07-A09 5',
mRNA sequence
Length = 415
Score = 60.0 bits (30), Expect = 9e-007
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||||||||| || || ||||| ||
Sbjct: 295 cctgaaacgctatttgggattttcttcgaggagatcaaccatgctggtgccggtggatta 354
Query: 487 tgggcagagcttgtcagtaacagaggtttcgaagctgg 524
||||| || ||||| || || ||||| || ||||||||
Sbjct: 355 tgggccgaacttgttagcaaaagagggtttgaagctgg 392
>gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24
Length = 127053
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1114 tgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatgggctt 1173
||||||||||| ||||| || | || ||||||||| | ||||||||||||||||| |||
Sbjct: 22252 tgggaagagagacctggccattatggtgatgtttggaagtactggactgatgatggcctt 22311
Query: 1174 gg 1175
||
Sbjct: 22312 gg 22313
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA,
complete cds
Length = 2219
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1114 tgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatgggctt 1173
||||||||||| ||||| || | || ||||||||| | ||||||||||||||||| |||
Sbjct: 937 tgggaagagagacctggccattatggtgatgtttggaagtactggactgatgatggcctt 996
Query: 1174 gg 1175
||
Sbjct: 997 gg 998
Score = 50.1 bits (25), Expect = 9e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 682 gtttataacccaggtttttggggcatgaacatagaagatgggaag 726
||||||||||| |||| |||||||||||||| ||||| ||||||
Sbjct: 499 gtttataacccgggttactggggcatgaacattgaagaagggaag 543
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA,
complete cds
Length = 2055
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1114 tgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatgggctt 1173
||||||||||| ||||| || | || ||||||||| | ||||||||||||||||| |||
Sbjct: 862 tgggaagagagacctggccattatggtgatgtttggaagtactggactgatgatggcctt 921
Query: 1174 gg 1175
||
Sbjct: 922 gg 923
Score = 50.1 bits (25), Expect = 9e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 682 gtttataacccaggtttttggggcatgaacatagaagatgggaag 726
||||||||||| |||| |||||||||||||| ||||| ||||||
Sbjct: 424 gtttataacccgggttactggggcatgaacattgaagaagggaag 468
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA,
complete cds
Length = 2043
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1114 tgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatgggctt 1173
||||||||||| ||||| || | || ||||||||| | ||||||||||||||||| |||
Sbjct: 867 tgggaagagagacctggccattatggtgatgtttggaagtactggactgatgatggcctt 926
Query: 1174 gg 1175
||
Sbjct: 927 gg 928
Score = 50.1 bits (25), Expect = 9e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 682 gtttataacccaggtttttggggcatgaacatagaagatgggaag 726
||||||||||| |||| |||||||||||||| ||||| ||||||
Sbjct: 429 gtttataacccgggttactggggcatgaacattgaagaagggaag 473
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120
mRNA, complete cds
Length = 2208
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1114 tgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatgggctt 1173
||||||||||| ||||| || | || ||||||||| | ||||||||||||||||| |||
Sbjct: 937 tgggaagagagacctggccattatggtgatgtttggaagtactggactgatgatggcctt 996
Query: 1174 gg 1175
||
Sbjct: 997 gg 998
Score = 50.1 bits (25), Expect = 9e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 682 gtttataacccaggtttttggggcatgaacatagaagatgggaag 726
||||||||||| |||| |||||||||||||| ||||| ||||||
Sbjct: 499 gtttataacccgggttactggggcatgaacattgaagaagggaag 543
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1114 tgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatgggctt 1173
||||||||||| ||||| || | || ||||||||| | ||||||||||||||||| |||
Sbjct: 9123882 tgggaagagagacctggccattatggtgatgtttggaagtactggactgatgatggcctt 9123823
Query: 1174 gg 1175
||
Sbjct: 9123822 gg 9123821
>gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-83-O18 5',
mRNA sequence
Length = 655
Score = 50.1 bits (25), Expect = 9e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 682 gtttataacccaggtttttggggcatgaacatagaagatgggaag 726
||||||||||| |||| |||||||||||||| ||||| ||||||
Sbjct: 500 gtttataacccgggttactggggcatgaacattgaagaagggaag 544
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtt 514
|||||||||||||||| || || ||||| ||||||| || ||||| || ||||||||||
Sbjct: 52121 aggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacagaggtt 52180
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 53322 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 53381
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 53382 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 53441
Query: 1171 cttgg 1175
|||||
Sbjct: 53442 cttgg 53446
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtt 514
|||||||||||||||| || || ||||| ||||||| || ||||| || ||||||||||
Sbjct: 3384128 aggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacagaggtt 3384187
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 3385329 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 3385388
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 3385389 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 3385448
Query: 1171 cttgg 1175
|||||
Sbjct: 3385449 cttgg 3385453
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 455 aggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggtt 514
|||||||||||||||| || || ||||| ||||||| || ||||| || ||||||||||
Sbjct: 3364292 aggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacagaggtt 3364233
Score = 42.1 bits (21), Expect = 0.22
Identities = 99/125 (79%)
Strand = Plus / Minus
Query: 1051 ggttgttttgtagaaggtgactggctaagaaatgcattcagatggagagaatcaattggt 1110
||||||||||| || ||||| ||| |||| ||||| ||| | |||| |||| | | ||
Sbjct: 3363091 ggttgttttgtcgagggtgaatggttaagtaatgccttccgctggaaagaaaccgtagga 3363032
Query: 1111 ccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgatggg 1170
|| ||||||||||| || || || || || ||||||||| | || ||||| ||||||||
Sbjct: 3363031 ccttgggaagagagaccgggccattttggtgatgtttggaagtattggaccgatgatggc 3362972
Query: 1171 cttgg 1175
|||||
Sbjct: 3362971 cttgg 3362967
>gb|BE529110.1|BE529110 M73F10STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
600038335R1 5', mRNA sequence
Length = 249
Score = 46.1 bits (23), Expect = 0.014
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1141 gatgtttggcattactggactgatgatgggcttgg 1175
||||||||| | ||||||||||||||||| |||||
Sbjct: 14 gatgtttggaagtactggactgatgatggccttgg 48
>gb|BP833955.1|BP833955 BP833955 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-98-B07 5',
mRNA sequence
Length = 390
Score = 44.1 bits (22), Expect = 0.055
Identities = 71/86 (82%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 427 cctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggtggcata 486
|||||||| || |||||||| || || ||||||||||| ||||| || || ||||| ||
Sbjct: 296 cctgaaacgctatttgggattttcttcgaggagatcaa-catgctggtgccggtggatta 354
Query: 487 tgggcagagcttgtcagtaacagagg 512
||||| || ||||| || ||||||||
Sbjct: 355 tgggccgaacttgttagcaacagagg 380
>gb|BP847175.1|BP847175 BP847175 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-99-J11 5',
mRNA sequence
Length = 470
Score = 44.1 bits (22), Expect = 0.055
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 439 tttgggatattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagctt 498
|||||||| || || ||||||||||||||||| || || ||||| ||||||| || |||
Sbjct: 381 tttgggattttcttcgaggagatcaaccatgctggtgccggtggattatgggccgaactt 440
Query: 499 gt 500
||
Sbjct: 441 gt 442
>gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M24F11 5', mRNA sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.22
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 682 gtttataacccaggtttttggggcatgaacatagaagatgggaag 726
||||||||||| |||| |||||||||||||| ||| | ||||||
Sbjct: 325 gtttataacccgggttactggggcatgaacattgaaaaagggaag 369
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 573,518
Number of Sequences: 1013581
Number of extensions: 573518
Number of successful extensions: 41433
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40631
Number of HSP's gapped (non-prelim): 795
length of query: 1192
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1172
effective length of database: 888,669,252
effective search space: 1041520363344
effective search space used: 1041520363344
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)