BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.3
(672 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H36655.1|H36655 14323 Lambda-PRL2 Arabidopsis thaliana c... 54 3e-005
gb|CF652675.1|CF652675 70-L020135-066-001-K17-SP6P MPIZ-ADI... 54 3e-005
gb|CF652676.1|CF652676 70-L020135w-066-001-K17-SP6P MPIZ-AD... 54 3e-005
emb|AX412274.1| Sequence 38 from Patent WO0222675 54 3e-005
emb|AX506624.1| Sequence 1319 from Patent WO0216655 54 3e-005
emb|AX651351.1| Sequence 139 from Patent WO03000898 54 3e-005
gb|BT009726.1| Arabidopsis thaliana At2g43590 gene, complet... 54 3e-005
emb|BX820984.1|CNS0A9JX Arabidopsis thaliana Full-length cD... 54 3e-005
ref|NM_129921.3| Arabidopsis thaliana chitin binding / chit... 54 3e-005
gb|AU239595.1|AU239595 AU239595 RAFL21 Arabidopsis thaliana... 48 0.002
dbj|AK118725.1| Arabidopsis thaliana At3g47540 mRNA for put... 48 0.002
ref|NM_114622.2| Arabidopsis thaliana chitinase AT3G47540 m... 48 0.002
gb|AY080777.1| Arabidopsis thaliana unknown protein (At1g60... 40 0.48
gb|AY117155.1| Arabidopsis thaliana unknown protein (At1g60... 40 0.48
emb|AX505527.1| Sequence 222 from Patent WO0216655 40 0.48
gb|AY084782.1| Arabidopsis thaliana clone 117747 mRNA, comp... 40 0.48
dbj|BD268175.1| Gene to be the target for herbicide and met... 40 0.48
dbj|BD268182.1| Gene to be the target for herbicide and met... 40 0.48
gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T... 40 0.48
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 40 0.48
ref|NM_104707.2| Arabidopsis thaliana EMB1220 AT1G60170 (EM... 40 0.48
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.48
>gb|H36655.1|H36655 14323 Lambda-PRL2 Arabidopsis thaliana cDNA clone 176J3T7, mRNA
sequence
Length = 384
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 90 atgtagcagaaatgtccggtctcgtgagtga 60
>gb|CF652675.1|CF652675 70-L020135-066-001-K17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K171Q 5-PRIME, mRNA sequence
Length = 514
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 112 atgtagcagaaatgtccggtctcgtgagtga 82
>gb|CF652676.1|CF652676 70-L020135w-066-001-K17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001K171Q 5-PRIME, mRNA sequence
Length = 751
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 112 atgtagcagaaatgtccggtctcgtgagtga 82
>emb|AX412274.1| Sequence 38 from Patent WO0222675
Length = 795
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>emb|AX506624.1| Sequence 1319 from Patent WO0216655
Length = 795
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>emb|AX651351.1| Sequence 139 from Patent WO03000898
Length = 795
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>gb|BT009726.1| Arabidopsis thaliana At2g43590 gene, complete cds
Length = 795
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>emb|BX820984.1|CNS0A9JX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH89ZD02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 956
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 394 atgtagcagaaatgtccggtctcgtgagtga 364
>ref|NM_129921.3| Arabidopsis thaliana chitin binding / chitinase AT2G43590 mRNA,
complete cds
Length = 1056
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtga 666
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>gb|AU239595.1|AU239595 AU239595 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-05-B10 5',
mRNA sequence
Length = 639
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgac 667
||||||||||| |||||||||||||| |||||
Sbjct: 305 atgtagcagaagtgtccggtctcgtgagtgac 274
>dbj|AK118725.1| Arabidopsis thaliana At3g47540 mRNA for putative endochitinase,
complete cds, clone: RAFL21-05-B10
Length = 931
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgac 667
||||||||||| |||||||||||||| |||||
Sbjct: 305 atgtagcagaagtgtccggtctcgtgagtgac 274
>ref|NM_114622.2| Arabidopsis thaliana chitinase AT3G47540 mRNA, complete cds
Length = 932
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 636 atgtagcagaaatgtccggtctcgtgcgtgac 667
||||||||||| |||||||||||||| |||||
Sbjct: 305 atgtagcagaagtgtccggtctcgtgagtgac 274
>gb|AY080777.1| Arabidopsis thaliana unknown protein (At1g60170) mRNA, complete cds
Length = 1804
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 592 gctcttgttgatctcgctga 611
>gb|AY117155.1| Arabidopsis thaliana unknown protein (At1g60170) mRNA, complete cds
Length = 1489
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 454 gctcttgttgatctcgctga 473
>emb|AX505527.1| Sequence 222 from Patent WO0216655
Length = 1536
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 532 gctcttgttgatctcgctga 551
>gb|AY084782.1| Arabidopsis thaliana clone 117747 mRNA, complete sequence
Length = 1729
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 542 gctcttgttgatctcgctga 561
>dbj|BD268175.1| Gene to be the target for herbicide and method for targeting the
gene
Length = 1458
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 454 gctcttgttgatctcgctga 473
>dbj|BD268182.1| Gene to be the target for herbicide and method for targeting the
gene
Length = 2170
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 766 gctcttgttgatctcgctga 785
>gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence
Length = 116177
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 33740 gctcttgttgatctcgctga 33759
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 6435089 gctcttgttgatctcgctga 6435108
>ref|NM_104707.2| Arabidopsis thaliana EMB1220 AT1G60170 (EMB1220) mRNA, complete cds
Length = 1794
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 592 gctcttgttgatctcgctga 611
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gctcttgttgatctcgctga 636
||||||||||||||||||||
Sbjct: 22197438 gctcttgttgatctcgctga 22197457
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141,982
Number of Sequences: 1013581
Number of extensions: 141982
Number of successful extensions: 9906
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9785
Number of HSP's gapped (non-prelim): 121
length of query: 672
length of database: 908,940,872
effective HSP length: 20
effective length of query: 652
effective length of database: 888,669,252
effective search space: 579412352304
effective search space used: 579412352304
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)