BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.1
(1225 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H36655.1|H36655 14323 Lambda-PRL2 Arabidopsis thaliana c... 54 6e-005
gb|CF652675.1|CF652675 70-L020135-066-001-K17-SP6P MPIZ-ADI... 54 6e-005
gb|CF652676.1|CF652676 70-L020135w-066-001-K17-SP6P MPIZ-AD... 54 6e-005
emb|AX412274.1| Sequence 38 from Patent WO0222675 54 6e-005
emb|AX506624.1| Sequence 1319 from Patent WO0216655 54 6e-005
emb|AX651351.1| Sequence 139 from Patent WO03000898 54 6e-005
gb|BT009726.1| Arabidopsis thaliana At2g43590 gene, complet... 54 6e-005
emb|BX820984.1|CNS0A9JX Arabidopsis thaliana Full-length cD... 54 6e-005
ref|NM_129921.3| Arabidopsis thaliana chitin binding / chit... 54 6e-005
gb|AU239595.1|AU239595 AU239595 RAFL21 Arabidopsis thaliana... 48 0.004
dbj|AK118725.1| Arabidopsis thaliana At3g47540 mRNA for put... 48 0.004
ref|NM_114622.2| Arabidopsis thaliana chitinase AT3G47540 m... 48 0.004
gb|AQ960936.1|AQ960936 LERFI23TF LERA Arabidopsis thaliana ... 42 0.22
gb|AQ960937.1|AQ960937 LERFI23TR LERA Arabidopsis thaliana ... 42 0.22
gb|CW847889.1|CW847889 GT19605.Ds3.07.29.2004.jx81.851 Arab... 42 0.22
dbj|AB025631.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.22
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.22
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.22
>gb|H36655.1|H36655 14323 Lambda-PRL2 Arabidopsis thaliana cDNA clone 176J3T7, mRNA
sequence
Length = 384
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 90 atgtagcagaaatgtccggtctcgtgagtga 60
>gb|CF652675.1|CF652675 70-L020135-066-001-K17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K171Q 5-PRIME, mRNA sequence
Length = 514
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 112 atgtagcagaaatgtccggtctcgtgagtga 82
>gb|CF652676.1|CF652676 70-L020135w-066-001-K17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001K171Q 5-PRIME, mRNA sequence
Length = 751
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 112 atgtagcagaaatgtccggtctcgtgagtga 82
>emb|AX412274.1| Sequence 38 from Patent WO0222675
Length = 795
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>emb|AX506624.1| Sequence 1319 from Patent WO0216655
Length = 795
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>emb|AX651351.1| Sequence 139 from Patent WO03000898
Length = 795
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>gb|BT009726.1| Arabidopsis thaliana At2g43590 gene, complete cds
Length = 795
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>emb|BX820984.1|CNS0A9JX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH89ZD02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 956
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 394 atgtagcagaaatgtccggtctcgtgagtga 364
>ref|NM_129921.3| Arabidopsis thaliana chitin binding / chitinase AT2G43590 mRNA,
complete cds
Length = 1056
Score = 54.0 bits (27), Expect = 6e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtga 730
|||||||||||||||||||||||||| ||||
Sbjct: 404 atgtagcagaaatgtccggtctcgtgagtga 374
>gb|AU239595.1|AU239595 AU239595 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-05-B10 5',
mRNA sequence
Length = 639
Score = 48.1 bits (24), Expect = 0.004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgac 731
||||||||||| |||||||||||||| |||||
Sbjct: 305 atgtagcagaagtgtccggtctcgtgagtgac 274
>dbj|AK118725.1| Arabidopsis thaliana At3g47540 mRNA for putative endochitinase,
complete cds, clone: RAFL21-05-B10
Length = 931
Score = 48.1 bits (24), Expect = 0.004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgac 731
||||||||||| |||||||||||||| |||||
Sbjct: 305 atgtagcagaagtgtccggtctcgtgagtgac 274
>ref|NM_114622.2| Arabidopsis thaliana chitinase AT3G47540 mRNA, complete cds
Length = 932
Score = 48.1 bits (24), Expect = 0.004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 700 atgtagcagaaatgtccggtctcgtgcgtgac 731
||||||||||| |||||||||||||| |||||
Sbjct: 305 atgtagcagaagtgtccggtctcgtgagtgac 274
>gb|AQ960936.1|AQ960936 LERFI23TF LERA Arabidopsis thaliana genomic clone LERFI23, DNA
sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 aacatacagacatacagttgt 121
|||||||||||||||||||||
Sbjct: 599 aacatacagacatacagttgt 619
>gb|AQ960937.1|AQ960937 LERFI23TR LERA Arabidopsis thaliana genomic clone LERFI23, DNA
sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 101 aacatacagacatacagttgt 121
|||||||||||||||||||||
Sbjct: 398 aacatacagacatacagttgt 378
>gb|CW847889.1|CW847889 GT19605.Ds3.07.29.2004.jx81.851 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT19605, DNA sequence
Length = 850
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 101 aacatacagacatacagttgt 121
|||||||||||||||||||||
Sbjct: 590 aacatacagacatacagttgt 610
>dbj|AB025631.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPN9
Length = 81035
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 101 aacatacagacatacagttgt 121
|||||||||||||||||||||
Sbjct: 60745 aacatacagacatacagttgt 60725
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 101 aacatacagacatacagttgt 121
|||||||||||||||||||||
Sbjct: 6885170 aacatacagacatacagttgt 6885150
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 101 aacatacagacatacagttgt 121
|||||||||||||||||||||
Sbjct: 6927976 aacatacagacatacagttgt 6927956
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 300,322
Number of Sequences: 1013581
Number of extensions: 300322
Number of successful extensions: 22534
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22275
Number of HSP's gapped (non-prelim): 259
length of query: 1225
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1205
effective length of database: 888,669,252
effective search space: 1070846448660
effective search space used: 1070846448660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)