BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-... 68 1e-009
gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADI... 68 1e-009
gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS... 68 1e-009
gb|BP619414.1|BP619414 BP619414 RAFL16 Arabidopsis thaliana... 68 1e-009
emb|X74319.1|ATLIM1 A.thaliana atl1 gene 68 1e-009
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 68 1e-009
gb|AF370569.1|AF370569 Arabidopsis thaliana similar to tran... 68 1e-009
emb|AX412728.1| Sequence 492 from Patent WO0222675 68 1e-009
gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence 68 1e-009
gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, comp... 68 1e-009
gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis tha... 68 1e-009
ref|NM_100894.2| Arabidopsis thaliana transcription factor/... 68 1e-009
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 68 1e-009
emb|CR379094.1| Arabidopsis thaliana transposon insertion S... 62 8e-008
gb|BP594775.1|BP594775 BP594775 RAFL15 Arabidopsis thaliana... 60 3e-007
gb|BP790629.1|BP790629 BP790629 RAFL7 Arabidopsis thaliana ... 60 3e-007
gb|AV816234.1|AV816234 AV816234 RAFL9 Arabidopsis thaliana ... 56 5e-006
gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS... 56 5e-006
gb|AV831505.1|AV831505 AV831505 RAFL9 Arabidopsis thaliana ... 54 2e-005
gb|BP584963.1|BP584963 BP584963 RAFL14 Arabidopsis thaliana... 54 2e-005
gb|N37716.1|N37716 18943 Lambda-PRL2 Arabidopsis thaliana c... 52 8e-005
gb|BX841501.1|BX841501 BX841501 Arabidopsis thaliana Flower... 52 8e-005
gb|T42207.1|T42207 5470 Lambda-PRL2 Arabidopsis thaliana cD... 50 3e-004
gb|BP668690.1|BP668690 BP668690 RAFL21 Arabidopsis thaliana... 50 3e-004
gb|BP668484.1|BP668484 BP668484 RAFL21 Arabidopsis thaliana... 44 0.020
gb|AW004090.1|AW004090 701494971 A. thaliana, Ohio State cl... 42 0.078
emb|CR383925.1| Arabidopsis thaliana transposon insertion S... 42 0.078
gb|BP671292.1|BP671292 BP671292 RAFL21 Arabidopsis thaliana... 40 0.31
>gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 554
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 495 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 436
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 435 ttgaagcagctcttgtggtaca 414
>gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 495 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 436
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 435 ttgaagcagctcttgtggtaca 414
>gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 495 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 436
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 435 ttgaagcagctcttgtggtaca 414
>gb|BP619414.1|BP619414 BP619414 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-33-D05 3',
mRNA sequence
Length = 450
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 328 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 387
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 388 ttgaagcagctcttgtggtaca 409
>emb|X74319.1|ATLIM1 A.thaliana atl1 gene
Length = 1140
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 1005 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 946
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 945 ttgaagcagctcttgtggtaca 924
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 3346605 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 3346664
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 3346665 ttgaagcagctcttgtggtaca 3346686
>gb|AF370569.1|AF370569 Arabidopsis thaliana similar to transcription factor SF3
(pir|IS37656) (F14N23.8) mRNA, complete cds
Length = 610
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 467 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 408
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 407 ttgaagcagctcttgtggtaca 386
>emb|AX412728.1| Sequence 492 from Patent WO0222675
Length = 573
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 467 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 408
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 407 ttgaagcagctcttgtggtaca 386
>gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence
Length = 873
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 517 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 458
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 457 ttgaagcagctcttgtggtaca 436
>gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, complete sequence
Length = 886
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 551 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 492
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 491 ttgaagcagctcttgtggtaca 470
>gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1,
complete sequence
Length = 100746
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 27143 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 27202
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 27203 ttgaagcagctcttgtggtaca 27224
>ref|NM_100894.2| Arabidopsis thaliana transcription factor/ zinc ion binding
AT1G10200 mRNA, complete cds
Length = 944
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 551 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 492
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 491 ttgaagcagctcttgtggtaca 470
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 67.9 bits (34), Expect = 1e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 3346785 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 3346844
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 3346845 ttgaagcagctcttgtggtaca 3346866
>emb|CR379094.1| Arabidopsis thaliana transposon insertion STS GT_5.112768,
sequence tagged site
Length = 140
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 79 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 20
Query: 63 ttgaagcagctcttgtggt 81
|||||||||||||||||||
Sbjct: 19 ttgaagcagctcttgtggt 1
>gb|BP594775.1|BP594775 BP594775 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-27-D06 3',
mRNA sequence
Length = 461
Score = 60.0 bits (30), Expect = 3e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||| | || ||||| |||||||| |||
Sbjct: 328 agcttaccctcgtgagctatgtaattcgaagggtttatcgtgcagcctccatgtgtacac 387
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 388 ttgaagcagctcttgtggtaca 409
>gb|BP790629.1|BP790629 BP790629 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-44-A22 3',
mRNA sequence
Length = 437
Score = 60.0 bits (30), Expect = 3e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| ||
Sbjct: 333 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtaaac 392
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 393 ttgaagcagctcttgtggtaca 414
>gb|AV816234.1|AV816234 AV816234 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-89-N21 3',
mRNA sequence
Length = 420
Score = 56.0 bits (28), Expect = 5e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 341 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 400
Query: 63 ttgaagcagctcttgtggta 82
||||||||||||| ||||||
Sbjct: 401 ttgaagcagctctggtggta 420
>gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768B213Q 5-PRIME, mRNA sequence
Length = 504
Score = 56.0 bits (28), Expect = 5e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 21 atgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtgg 80
||||| || |||||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct: 502 atgtaattcgaagggcttatcgtgcagcctccatgtgtacacttgaagcagctcttgtgg 443
Query: 81 taca 84
||||
Sbjct: 442 taca 439
>gb|AV831505.1|AV831505 AV831505 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-89-N21 5',
mRNA sequence
Length = 580
Score = 54.0 bits (27), Expect = 2e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || || ||||| || ||||| |||||||| |||
Sbjct: 518 agcttaccctcgtgagctatgtaattcgaggggcttatcgtgcagcctccatgtgtacac 459
Query: 63 ttgaagcagctcttgtggtaca 84
|||||||||||| |||||||||
Sbjct: 458 ttgaagcagctcntgtggtaca 437
>gb|BP584963.1|BP584963 BP584963 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-48-J09 3',
mRNA sequence
Length = 445
Score = 54.0 bits (27), Expect = 2e-005
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 360 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 419
Query: 63 ttgaagcagc-tcttgtggtaca 84
|||||||||| ||||||||||||
Sbjct: 420 ttgaagcagcctcttgtggtaca 442
>gb|N37716.1|N37716 18943 Lambda-PRL2 Arabidopsis thaliana cDNA clone 209A20T7, mRNA
sequence
Length = 427
Score = 52.0 bits (26), Expect = 8e-005
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| ||||||| ||
Sbjct: 150 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcannctccatgtgtanac 91
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||| ||||||||||||
Sbjct: 90 ttgaagcagntcttgtggtaca 69
>gb|BX841501.1|BX841501 BX841501 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB90ZE10 5PRIM, mRNA sequence
Length = 845
Score = 52.0 bits (26), Expect = 8e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || | ||| |||||||| ||
Sbjct: 512 agcttaccctcgtgagctatgtaattcgaagggcttatcgggcagcctccatgtgtaaac 453
Query: 63 ttgaagcagctcttgtggtaca 84
||||||||||||||||||||||
Sbjct: 452 ttgaagcagctcttgtggtaca 431
>gb|T42207.1|T42207 5470 Lambda-PRL2 Arabidopsis thaliana cDNA clone 111C13T7, mRNA
sequence
Length = 414
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 60 cacttgaagcagctcttgtggtaca 84
|||||||||||||||||||||||||
Sbjct: 319 cacttgaagcagctcttgtggtaca 295
>gb|BP668690.1|BP668690 BP668690 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-28-D19 3',
mRNA sequence
Length = 425
Score = 50.1 bits (25), Expect = 3e-004
Identities = 72/84 (85%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgca-atgtagttagaagggctgatggtgcaccctccatg-gcagc 60
||||| |||||||| ||| ||||| || |||||||| || ||||| |||||||| | |
Sbjct: 336 agcttaccctcgtgagcatatgtaattcgaagggcttatcgtgcagcctccatgtgta-- 393
Query: 61 acttgaagcagctcttgtggtaca 84
||||||||||||||||||||||||
Sbjct: 394 acttgaagcagctcttgtggtaca 417
>gb|BP668484.1|BP668484 BP668484 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-27-G20 3',
mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.020
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||| || ||||| |||||||| |||
Sbjct: 333 agcttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacac 392
Query: 63 ttgaagcagc 72
||||||||||
Sbjct: 393 ttgaagcagc 402
>gb|AW004090.1|AW004090 701494971 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701494971, mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.078
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 60 cacttgaagcagctcttgtggtaca 84
||||||||||| |||||||||||||
Sbjct: 418 cacttgaagcacctcttgtggtaca 394
>emb|CR383925.1| Arabidopsis thaliana transposon insertion STS GT_5.106034,
sequence tagged site
Length = 291
Score = 42.1 bits (21), Expect = 0.078
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 62 cttgaagcagctcttgtggta 82
|||||||||||||||||||||
Sbjct: 41 cttgaagcagctcttgtggta 21
>gb|BP671292.1|BP671292 BP671292 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-39-E03 3',
mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.31
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 acttgaagcagctcttgtggtaca 84
|||||||||||||| |||||||||
Sbjct: 392 acttgaagcagctcctgtggtaca 415
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,132
Number of Sequences: 1013581
Number of extensions: 228132
Number of successful extensions: 17632
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17401
Number of HSP's gapped (non-prelim): 233
length of query: 438
length of database: 908,940,872
effective HSP length: 20
effective length of query: 418
effective length of database: 888,669,252
effective search space: 371463747336
effective search space used: 371463747336
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)