BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW843485.1|CW843485 ET13840.Ds5.08.25.2004.jx83.631 Arab... 86 1e-014
gb|BE520975.1|BE520975 M16A5STM Arabidopsis developing seed... 86 1e-014
gb|AV823903.1|AV823903 AV823903 RAFL6 Arabidopsis thaliana ... 86 1e-014
gb|CA781634.1|CA781634 031C03AF Infected Arabidopsis Leaf A... 86 1e-014
gb|CB264955.1|CB264955 21-E014658-035-002-I05-T7R MPIZ-ADIS... 86 1e-014
gb|CK117754.1|CK117754 214d08.p1 AtM1 Arabidopsis thaliana ... 86 1e-014
gb|CK118317.1|CK118317 217d18.p1 AtM1 Arabidopsis thaliana ... 86 1e-014
gb|CK119288.1|CK119288 218g08.p1 AtM1 Arabidopsis thaliana ... 86 1e-014
gb|CK121078.1|CK121078 204k20.p1 AtM1 Arabidopsis thaliana ... 86 1e-014
gb|CB254173.1|CB254173 77-E010699-019-002-J20-T7R MPIZ-ADIS... 86 1e-014
gb|BP796311.1|BP796311 BP796311 RAFL5 Arabidopsis thaliana ... 86 1e-014
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 86 1e-014
gb|AY065157.1| Arabidopsis thaliana unknown protein (At1g02... 86 1e-014
gb|AY114602.1| Arabidopsis thaliana unknown protein (At1g02... 86 1e-014
gb|AY087464.1| Arabidopsis thaliana clone 35733 mRNA, compl... 86 1e-014
gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence 86 1e-014
ref|NM_100094.1| Arabidopsis thaliana unknown protein AT1G0... 86 1e-014
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 86 1e-014
gb|AV536222.1|AV536222 AV536222 Arabidopsis thaliana liquid... 84 5e-014
gb|AV536260.1|AV536260 AV536260 Arabidopsis thaliana liquid... 84 5e-014
gb|AI992789.1|AI992789 701493549 A. thaliana, Ohio State cl... 78 3e-012
gb|T45171.1|T45171 8434 Lambda-PRL2 Arabidopsis thaliana cD... 74 5e-011
gb|BP840813.1|BP840813 BP840813 RAFL19 Arabidopsis thaliana... 74 5e-011
gb|AV784983.1|AV784983 AV784983 RAFL6 Arabidopsis thaliana ... 66 1e-008
gb|BP851679.1|BP851679 BP851679 RAFL21 Arabidopsis thaliana... 60 7e-007
gb|BE526683.1|BE526683 M66I19STM Arabidopsis developing see... 52 2e-004
gb|BP853815.1|BP853815 BP853815 RAFL21 Arabidopsis thaliana... 52 2e-004
gb|CW845354.1|CW845354 GT12069.Ds5.09.23.2003.jx26.545 Arab... 46 0.011
>gb|CW843485.1|CW843485 ET13840.Ds5.08.25.2004.jx83.631 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET13840, DNA sequence
Length = 631
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 384 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 443
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 444 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 503
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 504 ctattatccgcaaggaggt 522
>gb|BE520975.1|BE520975 M16A5STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M16A5 5', mRNA sequence
Length = 365
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 3 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 62
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 63 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 122
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 123 ctattatccgcaaggaggt 141
>gb|AV823903.1|AV823903 AV823903 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-C17 5',
mRNA sequence
Length = 414
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 62 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 121
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 122 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 181
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 182 ctattatccgcaaggaggt 200
>gb|CA781634.1|CA781634 031C03AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 542
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 10 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 69
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 70 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 129
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 130 ctattatccgcaaggaggt 148
>gb|CB264955.1|CB264955 21-E014658-035-002-I05-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000I052Q 5-PRIME, mRNA sequence
Length = 552
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 45 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 104
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 105 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 164
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 165 ctattatccgcaaggaggt 183
>gb|CK117754.1|CK117754 214d08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011D08214
5-PRIME, mRNA sequence
Length = 634
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 58 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 117
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 118 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 177
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 178 ctattatccgcaaggaggt 196
>gb|CK118317.1|CK118317 217d18.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011D18217
5-PRIME, mRNA sequence
Length = 606
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 37 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 96
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 97 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 156
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 157 ctattatccgcaaggaggt 175
>gb|CK119288.1|CK119288 218g08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011G08218
5-PRIME, mRNA sequence
Length = 711
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 10 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 69
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 70 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 129
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 130 ctattatccgcaaggaggt 148
>gb|CK121078.1|CK121078 204k20.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011K20204
5-PRIME, mRNA sequence
Length = 726
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 37 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 96
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 97 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 156
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 157 ctattatccgcaaggaggt 175
>gb|CB254173.1|CB254173 77-E010699-019-002-J20-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768J202Q 5-PRIME, mRNA sequence
Length = 581
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 38 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 97
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 98 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 157
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 158 ctattatccgcaaggaggt 176
>gb|BP796311.1|BP796311 BP796311 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-J15 5',
mRNA sequence
Length = 640
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 61 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 120
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 121 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 180
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 181 ctattatccgcaaggaggt 199
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 404439 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 404380
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 404379 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 404320
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 404319 ctattatccgcaaggaggt 404301
>gb|AY065157.1| Arabidopsis thaliana unknown protein (At1g02140; T7I23.7) mRNA,
complete cds
Length = 743
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 61 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 120
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 121 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 180
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 181 ctattatccgcaaggaggt 199
>gb|AY114602.1| Arabidopsis thaliana unknown protein (At1g02140) mRNA, complete cds
Length = 643
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 23 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 82
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 83 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 142
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 143 ctattatccgcaaggaggt 161
>gb|AY087464.1| Arabidopsis thaliana clone 35733 mRNA, complete sequence
Length = 764
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 61 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 120
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 121 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 180
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 181 ctattatccgcaaggaggt 199
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence
Length = 106973
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 54767 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 54708
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 54707 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 54648
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 54647 ctattatccgcaaggaggt 54629
>ref|NM_100094.1| Arabidopsis thaliana unknown protein AT1G02140 mRNA, complete cds
Length = 763
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 61 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 120
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 121 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 180
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 181 ctattatccgcaaggaggt 199
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 404379 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 404320
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 404319 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 404260
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 404259 ctattatccgcaaggaggt 404241
>gb|AV536222.1|AV536222 AV536222 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0610F 3', mRNA
sequence
Length = 568
Score = 83.8 bits (42), Expect = 5e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 111 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 170
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 171 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 230
Query: 209 ccatgatccgcaaggagg 226
| || |||||||||||||
Sbjct: 231 ctattatccgcaaggagg 248
>gb|AV536260.1|AV536260 AV536260 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0670F 3', mRNA
sequence
Length = 319
Score = 83.8 bits (42), Expect = 5e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 111 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 170
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 171 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgata 230
Query: 209 ccatgatccgcaaggagg 226
| || |||||||||||||
Sbjct: 231 ctattatccgcaaggagg 248
>gb|AI992789.1|AI992789 701493549 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701493549, mRNA sequence
Length = 498
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 41 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 100
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| |||||||| |||||||| ||||| ||||||||||||| |
Sbjct: 101 tcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgcta 160
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 161 ctattatccgcaaggaggt 179
>gb|T45171.1|T45171 8434 Lambda-PRL2 Arabidopsis thaliana cDNA clone 80B1T7, mRNA
sequence
Length = 385
Score = 73.8 bits (37), Expect = 5e-011
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 42 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 101
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||| | ||||| ||||||| |||||||| ||||| |||||||||| ||| |
Sbjct: 102 tcgagtttagagaggacggtaagctccnttacgccaataactctaactacaagancgata 161
Query: 209 ccatgatccgcaaggaggt 227
| || ||||||||||||||
Sbjct: 162 ctattatccgcaaggaggt 180
>gb|BP840813.1|BP840813 BP840813 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-31-E22 5',
mRNA sequence
Length = 403
Score = 73.8 bits (37), Expect = 5e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 163 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 222
||||| |||||||| |||||||| ||||| |||||||||||||| || || |||||||||
Sbjct: 160 gacggtaagctccgttacgccaataactctaactacaagaacgatactattatccgcaag 219
Query: 223 gaggt 227
|||||
Sbjct: 220 gaggt 224
>gb|AV784983.1|AV784983 AV784983 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-C17 3',
mRNA sequence
Length = 627
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 163 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 222
||||| |||||||| |||||||| | ||| |||||||||||||| || || |||||||||
Sbjct: 610 gacggtaagctccgttacgccaatacctctaactacaagaacgatactattatccgcaag 551
Query: 223 gaggt 227
|||||
Sbjct: 550 gaggt 546
>gb|BP851679.1|BP851679 BP851679 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-17-D10 5',
mRNA sequence
Length = 394
Score = 60.0 bits (30), Expect = 7e-007
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 163 gacggcaagctccgctacgccaacaactccaactac-aagaacgacaccatgatccgcaa 221
||||| |||||||| |||||||| ||||| |||||| |||||||| || || ||||||||
Sbjct: 135 gacggtaagctccgttacgccaataactctaactaccaagaacgatactattatccgcaa 194
Query: 222 ggaggt 227
||||||
Sbjct: 195 ggaggt 200
>gb|BE526683.1|BE526683 M66I19STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600035377R1 5', mRNA sequence
Length = 248
Score = 52.0 bits (26), Expect = 2e-004
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 163 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 222
||||| |||| ||| |||| || ||||| |||||||||||||| || || ||||||||
Sbjct: 5 gacggtaagcnccgttacgnnaataactctaactacaagaacganactattatccgcaan 64
Query: 223 gaggt 227
|||||
Sbjct: 65 gaggt 69
>gb|BP853815.1|BP853815 BP853815 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-I10 5',
mRNA sequence
Length = 398
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 178 tacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 227
|||||||| ||||| ||||||||||| || || || ||||||||||||||
Sbjct: 143 tacgccaataactctaactacaagaaggatactattatccgcaaggaggt 192
>gb|CW845354.1|CW845354 GT12069.Ds5.09.23.2003.jx26.545 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT12069, DNA sequence
Length = 545
Score = 46.1 bits (23), Expect = 0.011
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||| | ||||| || || ||||| || || || || ||||||||||| ||||
Sbjct: 463 agttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggagt 522
Query: 149 tcgagtt 155
|||||||
Sbjct: 523 tcgagtt 529
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 333,114
Number of Sequences: 1013581
Number of extensions: 333114
Number of successful extensions: 23200
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22878
Number of HSP's gapped (non-prelim): 323
length of query: 964
length of database: 908,940,872
effective HSP length: 20
effective length of query: 944
effective length of database: 888,669,252
effective search space: 838903773888
effective search space used: 838903773888
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)