BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.1
(712 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW843485.1|CW843485 ET13840.Ds5.08.25.2004.jx83.631 Arab... 80 6e-013
gb|BE520975.1|BE520975 M16A5STM Arabidopsis developing seed... 80 6e-013
gb|AV823903.1|AV823903 AV823903 RAFL6 Arabidopsis thaliana ... 80 6e-013
gb|CA781634.1|CA781634 031C03AF Infected Arabidopsis Leaf A... 80 6e-013
gb|CB264955.1|CB264955 21-E014658-035-002-I05-T7R MPIZ-ADIS... 80 6e-013
gb|CK117754.1|CK117754 214d08.p1 AtM1 Arabidopsis thaliana ... 80 6e-013
gb|CK118317.1|CK118317 217d18.p1 AtM1 Arabidopsis thaliana ... 80 6e-013
gb|CK119288.1|CK119288 218g08.p1 AtM1 Arabidopsis thaliana ... 80 6e-013
gb|CK121078.1|CK121078 204k20.p1 AtM1 Arabidopsis thaliana ... 80 6e-013
gb|CB254173.1|CB254173 77-E010699-019-002-J20-T7R MPIZ-ADIS... 80 6e-013
gb|BP796311.1|BP796311 BP796311 RAFL5 Arabidopsis thaliana ... 80 6e-013
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 80 6e-013
gb|AY065157.1| Arabidopsis thaliana unknown protein (At1g02... 80 6e-013
gb|AY114602.1| Arabidopsis thaliana unknown protein (At1g02... 80 6e-013
gb|AY087464.1| Arabidopsis thaliana clone 35733 mRNA, compl... 80 6e-013
gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence 80 6e-013
ref|NM_100094.1| Arabidopsis thaliana unknown protein AT1G0... 80 6e-013
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 80 6e-013
gb|AV536222.1|AV536222 AV536222 Arabidopsis thaliana liquid... 78 2e-012
gb|AV536260.1|AV536260 AV536260 Arabidopsis thaliana liquid... 78 2e-012
gb|BP840813.1|BP840813 BP840813 RAFL19 Arabidopsis thaliana... 74 4e-011
gb|AI992789.1|AI992789 701493549 A. thaliana, Ohio State cl... 72 1e-010
gb|T45171.1|T45171 8434 Lambda-PRL2 Arabidopsis thaliana cD... 68 2e-009
gb|AV784983.1|AV784983 AV784983 RAFL6 Arabidopsis thaliana ... 66 9e-009
gb|BP851679.1|BP851679 BP851679 RAFL21 Arabidopsis thaliana... 60 5e-007
gb|BE526683.1|BE526683 M66I19STM Arabidopsis developing see... 52 1e-004
gb|BP853815.1|BP853815 BP853815 RAFL21 Arabidopsis thaliana... 52 1e-004
gb|CW845354.1|CW845354 GT12069.Ds5.09.23.2003.jx26.545 Arab... 44 0.033
gb|AV806021.1|AV806021 AV806021 RAFL9 Arabidopsis thaliana ... 44 0.033
>gb|CW843485.1|CW843485 ET13840.Ds5.08.25.2004.jx83.631 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET13840, DNA sequence
Length = 631
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 383 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 442
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 443 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 502
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 503 actattatccgcaaggaggt 522
>gb|BE520975.1|BE520975 M16A5STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M16A5 5', mRNA sequence
Length = 365
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 2 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 61
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 62 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 121
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 122 actattatccgcaaggaggt 141
>gb|AV823903.1|AV823903 AV823903 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-C17 5',
mRNA sequence
Length = 414
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 61 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 120
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 121 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 180
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 181 actattatccgcaaggaggt 200
>gb|CA781634.1|CA781634 031C03AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 542
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 9 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 68
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 69 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 128
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 129 actattatccgcaaggaggt 148
>gb|CB264955.1|CB264955 21-E014658-035-002-I05-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000I052Q 5-PRIME, mRNA sequence
Length = 552
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 44 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 103
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 104 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 163
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 164 actattatccgcaaggaggt 183
>gb|CK117754.1|CK117754 214d08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011D08214
5-PRIME, mRNA sequence
Length = 634
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 57 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 116
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 117 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 176
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 177 actattatccgcaaggaggt 196
>gb|CK118317.1|CK118317 217d18.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011D18217
5-PRIME, mRNA sequence
Length = 606
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 36 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 95
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 96 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 155
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 156 actattatccgcaaggaggt 175
>gb|CK119288.1|CK119288 218g08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011G08218
5-PRIME, mRNA sequence
Length = 711
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 9 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 68
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 69 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 128
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 129 actattatccgcaaggaggt 148
>gb|CK121078.1|CK121078 204k20.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011K20204
5-PRIME, mRNA sequence
Length = 726
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 36 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 95
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 96 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 155
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 156 actattatccgcaaggaggt 175
>gb|CB254173.1|CB254173 77-E010699-019-002-J20-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768J202Q 5-PRIME, mRNA sequence
Length = 581
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 37 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 96
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 97 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 156
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 157 actattatccgcaaggaggt 176
>gb|BP796311.1|BP796311 BP796311 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-J15 5',
mRNA sequence
Length = 640
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 60 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 119
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 120 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 179
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 180 actattatccgcaaggaggt 199
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Minus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 404440 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 404381
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 404380 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 404321
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 404320 actattatccgcaaggaggt 404301
>gb|AY065157.1| Arabidopsis thaliana unknown protein (At1g02140; T7I23.7) mRNA,
complete cds
Length = 743
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 60 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 119
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 120 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 179
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 180 actattatccgcaaggaggt 199
>gb|AY114602.1| Arabidopsis thaliana unknown protein (At1g02140) mRNA, complete cds
Length = 643
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 22 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 81
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 82 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 141
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 142 actattatccgcaaggaggt 161
>gb|AY087464.1| Arabidopsis thaliana clone 35733 mRNA, complete sequence
Length = 764
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 60 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 119
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 120 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 179
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 180 actattatccgcaaggaggt 199
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence
Length = 106973
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Minus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 54768 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 54709
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 54708 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 54649
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 54648 actattatccgcaaggaggt 54629
>ref|NM_100094.1| Arabidopsis thaliana unknown protein AT1G02140 mRNA, complete cds
Length = 763
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 60 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 119
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 120 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 179
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 180 actattatccgcaaggaggt 199
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 79.8 bits (40), Expect = 6e-013
Identities = 115/140 (82%)
Strand = Plus / Minus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 404380 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 404321
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 404320 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 404261
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 404260 actattatccgcaaggaggt 404241
>gb|AV536222.1|AV536222 AV536222 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0610F 3', mRNA
sequence
Length = 568
Score = 77.8 bits (39), Expect = 2e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 110 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 169
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 170 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 229
Query: 190 accatgatccgcaaggagg 208
|| || |||||||||||||
Sbjct: 230 actattatccgcaaggagg 248
>gb|AV536260.1|AV536260 AV536260 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0670F 3', mRNA
sequence
Length = 319
Score = 77.8 bits (39), Expect = 2e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 110 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 169
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 170 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgat 229
Query: 190 accatgatccgcaaggagg 208
|| || |||||||||||||
Sbjct: 230 actattatccgcaaggagg 248
>gb|BP840813.1|BP840813 BP840813 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-31-E22 5',
mRNA sequence
Length = 403
Score = 73.8 bits (37), Expect = 4e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||| |||||||| |||||||| ||||| |||||||||||||| || || |||||||||
Sbjct: 160 gacggtaagctccgttacgccaataactctaactacaagaacgatactattatccgcaag 219
Query: 205 gaggt 209
|||||
Sbjct: 220 gaggt 224
>gb|AI992789.1|AI992789 701493549 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701493549, mRNA sequence
Length = 498
Score = 71.9 bits (36), Expect = 1e-010
Identities = 114/140 (81%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 40 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 99
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 100 ttcgagtttagagaggacggtaagctccgttacgccaataactctaactacaagaacgct 159
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 160 actattatccgcaaggaggt 179
>gb|T45171.1|T45171 8434 Lambda-PRL2 Arabidopsis thaliana cDNA clone 80B1T7, mRNA
sequence
Length = 385
Score = 67.9 bits (34), Expect = 2e-009
Identities = 113/140 (80%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 41 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 100
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| | | ||||| ||||||| |||||||| ||||| |||||||||| |||
Sbjct: 101 ttcgagtttagagaggacggtaagctccnttacgccaataactctaactacaagancgat 160
Query: 190 accatgatccgcaaggaggt 209
|| || ||||||||||||||
Sbjct: 161 actattatccgcaaggaggt 180
>gb|AV784983.1|AV784983 AV784983 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-C17 3',
mRNA sequence
Length = 627
Score = 65.9 bits (33), Expect = 9e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||| |||||||| |||||||| | ||| |||||||||||||| || || |||||||||
Sbjct: 610 gacggtaagctccgttacgccaatacctctaactacaagaacgatactattatccgcaag 551
Query: 205 gaggt 209
|||||
Sbjct: 550 gaggt 546
>gb|BP851679.1|BP851679 BP851679 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-17-D10 5',
mRNA sequence
Length = 394
Score = 60.0 bits (30), Expect = 5e-007
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 145 gacggcaagctccgctacgccaacaactccaactac-aagaacgacaccatgatccgcaa 203
||||| |||||||| |||||||| ||||| |||||| |||||||| || || ||||||||
Sbjct: 135 gacggtaagctccgttacgccaataactctaactaccaagaacgatactattatccgcaa 194
Query: 204 ggaggt 209
||||||
Sbjct: 195 ggaggt 200
>gb|BE526683.1|BE526683 M66I19STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600035377R1 5', mRNA sequence
Length = 248
Score = 52.0 bits (26), Expect = 1e-004
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||| |||| ||| |||| || ||||| |||||||||||||| || || ||||||||
Sbjct: 5 gacggtaagcnccgttacgnnaataactctaactacaagaacganactattatccgcaan 64
Query: 205 gaggt 209
|||||
Sbjct: 65 gaggt 69
>gb|BP853815.1|BP853815 BP853815 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-I10 5',
mRNA sequence
Length = 398
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 160 tacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 209
|||||||| ||||| ||||||||||| || || || ||||||||||||||
Sbjct: 143 tacgccaataactctaactacaagaaggatactattatccgcaaggaggt 192
>gb|CW845354.1|CW845354 GT12069.Ds5.09.23.2003.jx26.545 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT12069, DNA sequence
Length = 545
Score = 44.1 bits (22), Expect = 0.033
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
|||||||||||| | ||||| || || ||||| || || || || ||||||||||| |||
Sbjct: 462 gagttctacctgagatactatgtcggtcacaaagggaaatttggacacgagttcctggag 521
Query: 130 ttcgag 135
||||||
Sbjct: 522 ttcgag 527
>gb|AV806021.1|AV806021 AV806021 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-45-B13 3',
mRNA sequence
Length = 413
Score = 44.1 bits (22), Expect = 0.033
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 421 atcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcac 480
||||||||||| ||||| ||||| |||| ||| | || |||||||||||| || |||
Sbjct: 313 atcttctactatcttgttcaggacttgaaatgtcttgttttctcgctcatctctctgcac 254
Query: 481 ttcaagatcaagcc 494
||||| ||||||||
Sbjct: 253 ttcaaaatcaagcc 240
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259,198
Number of Sequences: 1013581
Number of extensions: 259198
Number of successful extensions: 18950
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18643
Number of HSP's gapped (non-prelim): 309
length of query: 712
length of database: 908,940,872
effective HSP length: 20
effective length of query: 692
effective length of database: 888,669,252
effective search space: 614959122384
effective search space used: 614959122384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)